Wall clock time and date at job start Tue Mar 31 2020 10:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86812 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47032 * 270.00247 * 3 2 1 5 5 H 1.48497 * 109.46748 * 30.00308 * 3 2 1 6 6 H 1.48493 * 109.46900 * 150.00112 * 3 2 1 7 7 C 1.37872 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00426 * 168.71253 * 7 2 1 9 9 C 1.50701 * 120.00115 * 348.71768 * 7 2 1 10 10 C 1.53005 * 115.54520 * 324.29639 * 9 7 2 11 11 O 1.45201 * 109.47231 * 306.66147 * 10 9 7 12 12 C 1.34698 * 117.00107 * 177.21823 * 11 10 9 13 13 O 1.21413 * 119.99666 * 5.24604 * 12 11 10 14 14 C 1.48119 * 120.00178 * 185.24603 * 12 11 10 15 15 C 1.35474 * 118.71996 * 175.56793 * 14 12 11 16 16 C 1.47125 * 118.76702 * 179.73200 * 15 14 12 17 17 O 1.21827 * 121.59451 * 180.25383 * 16 15 14 18 18 C 1.47528 * 116.80333 * 0.54333 * 16 15 14 19 19 C 1.39471 * 121.34159 * 179.73927 * 18 16 15 20 20 C 1.36730 * 119.66639 * 180.02562 * 19 18 16 21 21 C 1.38799 * 120.40505 * 359.97438 * 20 19 18 22 22 C 1.37805 * 120.74809 * 359.97438 * 21 20 19 23 23 C 1.39145 * 119.84326 * 0.02678 * 22 21 20 24 24 O 1.34118 * 118.71803 * 355.83326 * 14 12 11 25 25 C 1.52992 * 117.50353 * 109.96256 * 9 7 2 26 26 C 1.52992 * 117.50438 * 178.62827 * 9 7 2 27 27 H 0.97001 * 120.00037 * 5.04637 * 1 2 3 28 28 H 1.09002 * 109.46851 * 186.65790 * 10 9 7 29 29 H 1.09001 * 109.47408 * 66.66033 * 10 9 7 30 30 H 1.07999 * 120.61199 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.16346 * 0.02562 * 19 18 16 32 32 H 1.08001 * 119.79556 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.62756 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.07965 * 180.02562 * 22 21 20 35 35 H 1.08999 * 117.50622 * 215.00920 * 25 9 7 36 36 H 1.09003 * 117.49775 * 0.02662 * 25 9 7 37 37 H 1.09004 * 117.49892 * 359.97234 * 26 9 7 38 38 H 1.09000 * 117.50359 * 144.97253 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0689 -1.2029 -0.1836 9 6 1.2731 -2.4866 0.2542 10 6 0.1278 -2.4084 1.2658 11 8 0.6136 -1.8231 2.5026 12 6 -0.2891 -1.6293 3.4834 13 8 -1.4282 -2.0268 3.3472 14 6 0.1078 -0.9314 4.7281 15 6 -0.8412 -0.6697 5.6588 16 6 -0.4469 0.0182 6.8981 17 8 -1.2570 0.2748 7.7711 18 6 0.9751 0.3882 7.0300 19 6 1.4509 1.0480 8.1629 20 6 2.7757 1.3752 8.2491 21 6 3.6471 1.0543 7.2175 22 6 3.1954 0.4016 6.0910 23 6 1.8513 0.0588 5.9816 24 8 1.3918 -0.5782 4.8874 25 6 1.1114 -3.4507 -0.9227 26 6 2.0882 -3.7805 0.2088 27 1 -0.4850 0.8368 -0.0739 28 1 -0.2521 -3.4109 1.4627 29 1 -0.6730 -1.7894 0.8609 30 1 -1.8672 -0.9650 5.4960 31 1 0.7763 1.2992 8.9680 32 1 3.1464 1.8858 9.1256 33 1 4.6910 1.3190 7.2986 34 1 3.8830 0.1567 5.2950 35 1 0.1892 -4.0293 -0.9764 36 1 1.5345 -3.1502 -1.8812 37 1 3.1536 -3.6970 -0.0058 38 1 1.8088 -4.5760 0.8997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:12 Heat of formation + Delta-G solvation = -67.304817 kcal Electronic energy + Delta-G solvation = -25566.814834 eV Core-core repulsion = 21728.047759 eV Total energy + Delta-G solvation = -3838.767076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.88162 -39.82445 -38.77862 -38.12663 -36.95855 -35.40310 -32.78684 -32.24231 -31.33035 -30.88640 -27.31227 -25.73502 -25.06873 -24.41826 -22.53309 -21.47304 -21.16348 -19.54707 -19.30363 -18.49338 -17.90104 -16.86081 -16.65662 -16.13460 -15.80187 -15.63079 -15.44092 -15.00390 -14.65997 -14.37115 -14.18767 -14.12896 -13.89763 -13.27404 -12.98411 -12.67664 -12.41096 -12.26233 -12.18625 -11.74787 -11.41696 -11.03695 -10.93566 -10.61925 -10.51803 -10.43184 -10.01063 -9.87912 -9.74756 -9.57799 -9.40539 -9.21260 -8.87033 -8.53908 -8.21957 -6.14727 -4.17719 0.16729 0.53818 1.18075 1.97849 2.46263 2.89125 3.08949 3.21536 3.30082 3.33491 3.59950 3.82562 4.20620 4.29621 4.52461 4.75639 4.79712 4.92016 4.96881 5.05064 5.13269 5.34095 5.45786 5.63423 5.74075 5.76050 5.89024 6.00233 6.07008 6.11003 6.30730 6.36647 6.45438 6.55802 6.60905 6.84017 7.03936 7.13661 7.21083 7.25336 7.34617 7.80349 8.11374 8.26575 8.76961 9.42662 10.87898 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.004568 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.375673 B = 6128.373021 C = 6931.545700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.481 4.481 8 H 0.064 0.936 9 C 0.046 3.954 10 C 0.112 3.888 11 O -0.301 6.301 12 C 0.514 3.486 13 O -0.483 6.483 14 C 0.143 3.857 15 C -0.246 4.246 16 C 0.426 3.574 17 O -0.457 6.457 18 C -0.231 4.231 19 C -0.030 4.030 20 C -0.155 4.155 21 C -0.054 4.054 22 C -0.138 4.138 23 C 0.161 3.839 24 O -0.200 6.200 25 C -0.190 4.190 26 C -0.208 4.208 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.176 0.824 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 0.998 13.161 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.046 3.954 10 C 0.039 3.961 11 O -0.214 6.214 12 C 0.355 3.645 13 O -0.373 6.373 14 C 0.094 3.906 15 C -0.267 4.267 16 C 0.310 3.690 17 O -0.337 6.337 18 C -0.233 4.233 19 C -0.048 4.048 20 C -0.173 4.173 21 C -0.072 4.072 22 C -0.156 4.156 23 C 0.115 3.885 24 O -0.104 6.104 25 C -0.228 4.228 26 C -0.245 4.245 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.135 0.865 30 H 0.194 0.806 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.675 1.066 13.400 14.232 hybrid contribution 0.210 0.788 -0.187 0.837 sum 4.886 1.854 13.213 14.209 Atomic orbital electron populations 1.69762 1.06101 1.27155 1.49369 1.24925 0.94777 0.99219 0.93896 0.86557 0.80165 0.83007 0.78237 1.20574 1.21039 1.19461 1.20413 0.94232 0.88711 1.48435 0.91809 1.18858 0.94059 0.89866 0.92666 1.23054 0.99503 0.94980 0.78520 1.86646 1.38483 1.72343 1.23946 1.20203 0.84020 0.77265 0.83012 1.90864 1.19995 1.46987 1.79454 1.21182 0.81554 0.94332 0.93541 1.24180 1.01938 1.05560 0.95007 1.19782 0.87022 0.76634 0.85605 1.90687 1.54113 1.47434 1.41494 1.20729 0.95824 1.09038 0.97738 1.20827 0.95901 0.92617 0.95442 1.20969 0.93310 1.02918 1.00089 1.21237 1.00413 0.93920 0.91609 1.20667 0.91998 1.02363 1.00584 1.19445 0.93528 0.91772 0.83741 1.83060 1.24913 1.63966 1.38499 1.22977 0.99306 1.05804 0.94668 1.22982 0.97109 1.01646 1.02781 0.92574 0.94693 0.86457 0.80638 0.84160 0.84756 0.84133 0.83214 0.91361 0.89635 0.90171 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 10.82 55.43 0.60 -23.23 16 2 C 0.07 1.95 5.18 -17.82 -0.09 1.86 16 3 Si 0.89 20.45 29.56 -169.99 -5.02 15.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.48 -12.52 8.75 -34.44 -0.30 -12.82 16 8 H 0.06 1.65 7.84 -52.49 -0.41 1.24 16 9 C 0.05 1.09 2.12 -155.67 -0.33 0.77 16 10 C 0.11 2.61 4.55 37.16 0.17 2.78 16 11 O -0.30 -6.87 9.70 -45.14 -0.44 -7.30 16 12 C 0.51 10.52 7.93 34.79 0.28 10.80 16 13 O -0.48 -10.33 15.99 -19.20 -0.31 -10.64 16 14 C 0.14 2.51 6.88 -36.51 -0.25 2.26 16 15 C -0.25 -3.96 9.76 -36.96 -0.36 -4.32 16 16 C 0.43 6.70 7.18 -32.19 -0.23 6.47 16 17 O -0.46 -7.86 17.42 5.07 0.09 -7.77 16 18 C -0.23 -3.23 5.89 -104.78 -0.62 -3.85 16 19 C -0.03 -0.33 9.62 -39.67 -0.38 -0.71 16 20 C -0.15 -1.34 9.98 -39.92 -0.40 -1.74 16 21 C -0.05 -0.46 10.01 -39.53 -0.40 -0.86 16 22 C -0.14 -1.57 10.01 -39.40 -0.39 -1.96 16 23 C 0.16 2.30 6.78 -38.37 -0.26 2.04 16 24 O -0.20 -3.39 9.45 -6.41 -0.06 -3.45 16 25 C -0.19 -4.03 9.96 -26.70 -0.27 -4.30 16 26 C -0.21 -4.28 9.92 -26.70 -0.26 -4.54 16 27 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.12 3.02 6.07 -51.93 -0.32 2.70 16 30 H 0.18 2.71 7.50 -52.49 -0.39 2.31 16 31 H 0.14 1.41 7.81 -52.49 -0.41 1.00 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -29.28 341.14 -8.14 -37.42 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.04 Total: 2.55 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -4.10 Total: -8.14 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.60 Total: -23.23 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.72 Total: -29.16 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.28 -8.14 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds