Wall clock time and date at job start Tue Mar 31 2020 10:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86812 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47032 * 270.00247 * 3 2 1 5 5 H 1.48497 * 109.46748 * 30.00308 * 3 2 1 6 6 H 1.48493 * 109.46900 * 150.00112 * 3 2 1 7 7 C 1.37872 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00426 * 168.71253 * 7 2 1 9 9 C 1.50701 * 120.00115 * 348.71768 * 7 2 1 10 10 C 1.53005 * 115.54520 * 324.29639 * 9 7 2 11 11 O 1.45201 * 109.47231 * 306.66147 * 10 9 7 12 12 C 1.34698 * 117.00107 * 177.21823 * 11 10 9 13 13 O 1.21413 * 119.99666 * 5.24604 * 12 11 10 14 14 C 1.48119 * 120.00178 * 185.24603 * 12 11 10 15 15 C 1.35474 * 118.71996 * 175.56793 * 14 12 11 16 16 C 1.47125 * 118.76702 * 179.73200 * 15 14 12 17 17 O 1.21827 * 121.59451 * 180.25383 * 16 15 14 18 18 C 1.47528 * 116.80333 * 0.54333 * 16 15 14 19 19 C 1.39471 * 121.34159 * 179.73927 * 18 16 15 20 20 C 1.36730 * 119.66639 * 180.02562 * 19 18 16 21 21 C 1.38799 * 120.40505 * 359.97438 * 20 19 18 22 22 C 1.37805 * 120.74809 * 359.97438 * 21 20 19 23 23 C 1.39145 * 119.84326 * 0.02678 * 22 21 20 24 24 O 1.34118 * 118.71803 * 355.83326 * 14 12 11 25 25 C 1.52992 * 117.50353 * 109.96256 * 9 7 2 26 26 C 1.52992 * 117.50438 * 178.62827 * 9 7 2 27 27 H 0.97001 * 120.00037 * 5.04637 * 1 2 3 28 28 H 1.09002 * 109.46851 * 186.65790 * 10 9 7 29 29 H 1.09001 * 109.47408 * 66.66033 * 10 9 7 30 30 H 1.07999 * 120.61199 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.16346 * 0.02562 * 19 18 16 32 32 H 1.08001 * 119.79556 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.62756 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.07965 * 180.02562 * 22 21 20 35 35 H 1.08999 * 117.50622 * 215.00920 * 25 9 7 36 36 H 1.09003 * 117.49775 * 0.02662 * 25 9 7 37 37 H 1.09004 * 117.49892 * 359.97234 * 26 9 7 38 38 H 1.09000 * 117.50359 * 144.97253 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0689 -1.2029 -0.1836 9 6 1.2731 -2.4866 0.2542 10 6 0.1278 -2.4084 1.2658 11 8 0.6136 -1.8231 2.5026 12 6 -0.2891 -1.6293 3.4834 13 8 -1.4282 -2.0268 3.3472 14 6 0.1078 -0.9314 4.7281 15 6 -0.8412 -0.6697 5.6588 16 6 -0.4469 0.0182 6.8981 17 8 -1.2570 0.2748 7.7711 18 6 0.9751 0.3882 7.0300 19 6 1.4509 1.0480 8.1629 20 6 2.7757 1.3752 8.2491 21 6 3.6471 1.0543 7.2175 22 6 3.1954 0.4016 6.0910 23 6 1.8513 0.0588 5.9816 24 8 1.3918 -0.5782 4.8874 25 6 1.1114 -3.4507 -0.9227 26 6 2.0882 -3.7805 0.2088 27 1 -0.4850 0.8368 -0.0739 28 1 -0.2521 -3.4109 1.4627 29 1 -0.6730 -1.7894 0.8609 30 1 -1.8672 -0.9650 5.4960 31 1 0.7763 1.2992 8.9680 32 1 3.1464 1.8858 9.1256 33 1 4.6910 1.3190 7.2986 34 1 3.8830 0.1567 5.2950 35 1 0.1892 -4.0293 -0.9764 36 1 1.5345 -3.1502 -1.8812 37 1 3.1536 -3.6970 -0.0058 38 1 1.8088 -4.5760 0.8997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:12 Heat of formation + Delta-G solvation = -81.220311 kcal Electronic energy + Delta-G solvation = -25567.418255 eV Core-core repulsion = 21728.047759 eV Total energy + Delta-G solvation = -3839.370497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.05985 -41.41791 -40.00522 -39.14008 -38.66577 -37.12350 -34.19510 -34.04545 -32.31698 -31.81754 -28.94605 -27.56870 -26.57488 -25.44541 -23.52537 -23.05300 -22.69559 -21.16081 -20.61284 -19.75747 -19.16135 -18.64216 -18.04065 -17.69344 -17.08295 -17.01658 -16.80099 -16.49908 -15.95150 -15.60593 -15.45511 -15.42930 -15.07373 -14.98186 -14.19715 -14.05452 -13.91289 -13.60761 -13.49953 -13.15095 -12.88323 -12.80626 -12.40839 -12.32326 -12.15175 -12.11551 -11.60264 -11.40199 -11.17501 -11.10658 -11.03491 -10.67586 -10.27887 -10.08274 -9.55912 -8.10514 -6.18783 -1.09372 -0.46224 0.24511 0.71753 1.11562 1.38939 1.42957 1.51788 1.53976 1.72815 2.40240 2.63488 2.67101 2.99413 3.17533 3.30312 3.59802 3.68355 3.80159 4.03382 4.15402 4.15520 4.25068 4.31728 4.36130 4.53372 4.57160 4.69633 4.79769 4.86794 4.92247 4.93985 5.16539 5.22365 5.31159 5.34071 5.40915 5.53458 5.57921 5.80165 5.95943 6.12784 6.31126 6.48031 6.79180 7.43159 8.89987 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.004568 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.375673 B = 6128.373021 C = 6931.545700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.006 3.994 10 C 0.119 3.881 11 O -0.316 6.316 12 C 0.512 3.488 13 O -0.500 6.500 14 C 0.136 3.864 15 C -0.238 4.238 16 C 0.425 3.575 17 O -0.479 6.479 18 C -0.249 4.249 19 C -0.037 4.037 20 C -0.136 4.136 21 C -0.034 4.034 22 C -0.147 4.147 23 C 0.131 3.869 24 O -0.216 6.216 25 C -0.182 4.182 26 C -0.185 4.185 27 H 0.260 0.740 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.176 0.824 31 H 0.149 0.851 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 1.770 14.929 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.167 4.167 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.005 3.995 10 C 0.046 3.954 11 O -0.229 6.229 12 C 0.355 3.645 13 O -0.391 6.391 14 C 0.087 3.913 15 C -0.258 4.258 16 C 0.311 3.689 17 O -0.361 6.361 18 C -0.251 4.251 19 C -0.055 4.055 20 C -0.153 4.153 21 C -0.051 4.051 22 C -0.165 4.165 23 C 0.087 3.913 24 O -0.121 6.121 25 C -0.220 4.220 26 C -0.222 4.222 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.194 0.806 31 H 0.167 0.833 32 H 0.194 0.806 33 H 0.202 0.798 34 H 0.175 0.825 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.232 1.830 15.166 16.901 hybrid contribution -0.475 0.564 -0.643 0.978 sum 6.758 2.394 14.523 16.196 Atomic orbital electron populations 1.69905 1.07114 1.27294 1.50516 1.25544 0.95404 1.01834 0.93962 0.85769 0.79299 0.79724 0.78364 1.19968 1.21527 1.18592 1.20657 0.94132 0.90104 1.48212 0.92349 1.19001 0.95554 0.90470 0.94454 1.22824 0.98718 0.94970 0.78851 1.86635 1.39290 1.72813 1.24183 1.20604 0.83653 0.76903 0.83355 1.90833 1.20471 1.47767 1.80017 1.20705 0.82586 0.95390 0.92609 1.24300 1.01679 1.04763 0.95083 1.19939 0.88091 0.76053 0.84834 1.90666 1.54920 1.48557 1.41930 1.20700 0.94465 1.10761 0.99139 1.21096 0.97515 0.92327 0.94603 1.21472 0.91883 1.00888 1.01070 1.21788 1.02428 0.91124 0.89776 1.21017 0.90709 1.02717 1.02080 1.19891 0.94846 0.93228 0.83382 1.82988 1.24155 1.64750 1.40206 1.22976 1.00262 1.04625 0.94122 1.23006 0.97159 0.99904 1.02118 0.93037 0.93334 0.89342 0.80626 0.83309 0.80612 0.79806 0.82534 0.89838 0.89915 0.89553 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.25 10.82 21.45 0.23 -50.02 16 2 C 0.03 1.72 5.18 84.65 0.44 2.16 16 3 Si 0.94 42.15 29.56 68.60 2.03 44.18 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.49 -25.92 8.75 25.60 0.22 -25.70 16 8 H 0.06 3.03 7.84 -2.91 -0.02 3.01 16 9 C 0.01 0.27 2.12 -52.93 -0.11 0.16 16 10 C 0.12 5.69 4.55 71.98 0.33 6.01 16 11 O -0.32 -14.84 9.70 -51.63 -0.50 -15.34 16 12 C 0.51 21.85 7.93 70.45 0.56 22.41 16 13 O -0.50 -22.31 15.99 20.12 0.32 -21.99 16 14 C 0.14 4.98 6.88 24.26 0.17 5.15 16 15 C -0.24 -7.96 9.76 23.97 0.23 -7.73 16 16 C 0.43 13.61 7.18 27.06 0.19 13.80 16 17 O -0.48 -16.66 17.42 -4.76 -0.08 -16.74 16 18 C -0.25 -6.79 5.89 -19.97 -0.12 -6.90 16 19 C -0.04 -0.74 9.62 22.21 0.21 -0.53 16 20 C -0.14 -1.71 9.98 22.05 0.22 -1.49 16 21 C -0.03 -0.43 10.01 22.30 0.22 -0.20 16 22 C -0.15 -3.01 10.01 22.39 0.22 -2.79 16 23 C 0.13 3.69 6.78 23.05 0.16 3.85 16 24 O -0.22 -7.50 9.45 6.55 0.06 -7.44 16 25 C -0.18 -7.58 9.96 30.62 0.30 -7.28 16 26 C -0.18 -7.33 9.92 30.62 0.30 -7.03 16 27 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 28 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 29 H 0.09 4.73 6.07 -2.39 -0.01 4.72 16 30 H 0.18 5.72 7.50 -2.91 -0.02 5.69 16 31 H 0.15 2.65 7.81 -2.91 -0.02 2.63 16 32 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 38 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -65.31 341.14 6.72 -58.59 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.10 Total: 14.87 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 3.56 Total: -6.11 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.23 Total: -50.02 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -0.20 Total: -61.51 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.31 6.72 -58.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.627 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds