Wall clock time and date at job start Tue Mar 31 2020 10:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48502 * 109.46648 * 274.66292 * 3 2 1 5 5 H 1.48497 * 109.46945 * 34.66038 * 3 2 1 6 6 H 1.48499 * 109.47068 * 154.66406 * 3 2 1 7 7 C 1.39949 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00314 * 162.23479 * 7 2 1 9 9 C 1.41400 * 119.99867 * 342.23056 * 7 2 1 10 10 C 1.40716 * 120.24282 * 155.29023 * 9 7 2 11 11 C 1.37618 * 119.74250 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25019 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74602 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.46880 * 90.00746 * 13 12 11 15 15 C 1.35003 * 117.00199 * 179.97438 * 14 13 12 16 16 O 1.21729 * 119.99748 * 359.97438 * 15 14 13 17 17 C 1.41204 * 120.00352 * 180.02562 * 15 14 13 18 18 C 1.35784 * 120.00172 * 180.02562 * 17 15 14 19 19 C 1.41494 * 120.00076 * 179.72113 * 18 17 15 20 20 C 1.37089 * 125.48007 * 179.97438 * 19 18 17 21 21 C 1.37403 * 113.21987 * 179.83945 * 20 19 18 22 22 C 1.33878 * 115.13255 * 0.45912 * 21 20 19 23 23 S 1.70610 * 111.02018 * 359.74289 * 22 21 20 24 24 C 1.38629 * 120.49968 * 0.26513 * 12 11 10 25 25 C 1.37619 * 120.24856 * 359.43422 * 24 12 11 26 26 H 0.96994 * 119.99443 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.13037 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.87183 * 180.02562 * 11 10 9 29 29 H 1.08994 * 109.47755 * 330.00712 * 13 12 11 30 30 H 1.08998 * 109.46975 * 210.00044 * 13 12 11 31 31 H 1.08005 * 119.99701 * 359.97438 * 17 15 14 32 32 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 33 33 H 1.08007 * 123.39283 * 0.02662 * 20 19 18 34 34 H 1.08006 * 122.42906 * 180.19794 * 21 20 19 35 35 H 1.08003 * 124.49190 * 179.74639 * 22 21 20 36 36 H 1.08002 * 119.87068 * 179.70250 * 24 12 11 37 37 H 1.08003 * 120.12549 * 180.27523 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4925 2.6222 0.7962 6 1 3.5857 1.4136 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0493 -1.2345 -0.2848 9 6 1.3515 -2.4072 0.3748 10 6 1.8217 -3.6494 -0.0898 11 6 1.1746 -4.8062 0.2805 12 6 0.0632 -4.7507 1.1074 13 6 -0.6371 -6.0244 1.5053 14 8 -0.0598 -6.5285 2.7115 15 6 -0.5771 -7.6728 3.2070 16 8 -1.4945 -8.2263 2.6293 17 6 -0.0549 -8.2270 4.3961 18 6 -0.5749 -9.3781 4.8943 19 6 -0.0476 -9.9366 6.0826 20 6 -0.4853 -11.0889 6.6827 21 6 0.2092 -11.4016 7.8263 22 6 1.1742 -10.5358 8.1602 23 16 1.2693 -9.2602 7.0313 24 6 -0.4123 -3.5319 1.5662 25 6 0.2227 -2.3630 1.2137 26 1 -0.4849 0.8400 0.0004 27 1 2.6865 -3.6949 -0.7350 28 1 1.5339 -5.7608 -0.0745 29 1 -0.5251 -6.7637 0.7123 30 1 -1.6959 -5.8218 1.6664 31 1 0.7588 -7.7356 4.9090 32 1 -1.3883 -9.8697 4.3812 33 1 -1.2927 -11.6919 6.2940 34 1 -0.0104 -12.2799 8.4154 35 1 1.8085 -10.6321 9.0291 36 1 -1.2818 -3.5002 2.2060 37 1 -0.1469 -1.4149 1.5759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776113993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:19 Heat of formation + Delta-G solvation = -24.703228 kcal Electronic energy + Delta-G solvation = -21133.266165 eV Core-core repulsion = 17739.099304 eV Total energy + Delta-G solvation = -3394.166861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24200 -38.40976 -37.68912 -36.27306 -34.29169 -33.83346 -30.84316 -29.48506 -29.31456 -27.25912 -25.57143 -23.90809 -22.68954 -21.06353 -20.23955 -20.04662 -19.82239 -17.77549 -17.36955 -17.07224 -16.35865 -16.00862 -15.71960 -15.29775 -14.37866 -13.87759 -13.86295 -13.72731 -13.62420 -13.16483 -13.06840 -12.63222 -12.42535 -12.35824 -12.19969 -12.00180 -11.52960 -11.24159 -11.11028 -11.08009 -10.78260 -10.64573 -10.59385 -10.29421 -10.05942 -9.66289 -9.44445 -9.19165 -8.95360 -8.42713 -7.53582 -7.42988 -6.84858 -4.43878 -0.20492 1.18784 1.42187 1.62108 2.40917 2.52267 2.99566 3.02525 3.04334 3.09778 3.22434 3.52034 3.87454 4.52110 4.63644 4.71108 4.86773 4.98077 5.08709 5.32936 5.46574 5.64490 5.71900 5.73649 5.79615 5.83338 6.00079 6.08759 6.20070 6.28932 6.34448 6.87096 6.91040 6.99937 7.20856 7.29013 7.54323 7.76506 7.98243 8.03640 8.10504 8.21738 8.56281 8.81056 8.89343 10.09444 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.002142 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.313499 B =13071.629479 C =13732.804330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.065 4.065 12 C -0.233 4.233 13 C 0.134 3.866 14 O -0.341 6.341 15 C 0.494 3.506 16 O -0.526 6.526 17 C -0.199 4.199 18 C 0.026 3.974 19 C -0.204 4.204 20 C -0.096 4.096 21 C -0.147 4.147 22 C -0.245 4.245 23 S 0.212 5.788 24 C -0.076 4.076 25 C -0.170 4.170 26 H 0.282 0.718 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 -16.516 14.088 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.083 4.083 12 C -0.235 4.235 13 C 0.061 3.939 14 O -0.257 6.257 15 C 0.342 3.658 16 O -0.419 6.419 17 C -0.221 4.221 18 C 0.005 3.995 19 C -0.322 4.322 20 C -0.127 4.127 21 C -0.178 4.178 22 C -0.383 4.383 23 S 0.481 5.519 24 C -0.095 4.095 25 C -0.189 4.189 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.107 0.893 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.895 -15.193 13.785 20.535 hybrid contribution -0.646 -0.579 0.126 0.877 sum 0.249 -15.773 13.911 21.032 Atomic orbital electron populations 1.69828 1.07674 1.29457 1.34208 1.25971 0.94760 1.01522 0.92110 0.86283 0.80792 0.80476 0.79126 1.19493 1.19943 1.18316 1.19658 0.98200 0.91242 1.39497 0.90201 1.17686 0.90807 0.92082 0.87884 1.20952 1.03950 0.92799 1.07254 1.20389 0.94371 0.96622 0.96933 1.18676 1.03178 0.91506 1.10095 1.21324 0.96081 0.93880 0.82583 1.86428 1.59557 1.37529 1.42203 1.19717 0.80936 0.79884 0.85216 1.90862 1.28840 1.61332 1.60865 1.21384 1.04570 0.98600 0.97551 1.20747 0.95685 0.92620 0.90405 1.22644 1.04980 1.02196 1.02348 1.20992 1.00722 0.95704 0.95318 1.20000 0.97469 1.01795 0.98514 1.25387 1.05332 1.01269 1.06277 1.83387 1.30367 1.23191 1.14930 1.20539 0.98124 0.92556 0.98243 1.21293 0.99430 0.96726 1.01497 0.90684 0.88717 0.89294 0.92318 0.92236 0.84741 0.83409 0.83296 0.84113 0.81630 0.89310 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 10.97 55.55 0.61 -19.40 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.95 9.05 -37.74 -0.34 -12.29 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.13 5.57 -106.82 -0.60 2.54 16 10 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 11 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 12 C -0.23 -5.27 5.53 -104.33 -0.58 -5.84 16 13 C 0.13 2.64 5.49 36.01 0.20 2.84 16 14 O -0.34 -6.47 10.09 -41.32 -0.42 -6.88 16 15 C 0.49 8.25 7.68 31.86 0.24 8.49 16 16 O -0.53 -9.67 15.88 -19.44 -0.31 -9.98 16 17 C -0.20 -2.58 9.44 -39.34 -0.37 -2.95 16 18 C 0.03 0.28 9.36 -39.22 -0.37 -0.09 16 19 C -0.20 -1.92 6.21 -38.76 -0.24 -2.16 16 20 C -0.10 -0.74 10.25 -40.30 -0.41 -1.16 16 21 C -0.15 -1.02 10.14 -41.42 -0.42 -1.44 16 22 C -0.25 -1.70 10.92 29.20 0.32 -1.38 16 23 S 0.21 1.76 21.76 -107.50 -2.34 -0.58 16 24 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 25 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 26 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 27 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 31 H 0.13 1.58 7.04 -52.48 -0.37 1.21 16 32 H 0.15 1.54 7.46 -52.48 -0.39 1.14 16 33 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.16 6.17 -52.48 -0.32 2.84 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -29.19 343.58 -10.46 -39.64 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.01 Total: 5.30 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -4.14 Total: -26.50 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.40 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.73 Total: -16.86 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.34 Total: -0.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.19 -10.46 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.941 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds