Wall clock time and date at job start Tue Mar 31 2020 10:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48502 * 109.46648 * 274.66292 * 3 2 1 5 5 H 1.48497 * 109.46945 * 34.66038 * 3 2 1 6 6 H 1.48499 * 109.47068 * 154.66406 * 3 2 1 7 7 C 1.39949 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00314 * 162.23479 * 7 2 1 9 9 C 1.41400 * 119.99867 * 342.23056 * 7 2 1 10 10 C 1.40716 * 120.24282 * 155.29023 * 9 7 2 11 11 C 1.37618 * 119.74250 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25019 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74602 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.46880 * 90.00746 * 13 12 11 15 15 C 1.35003 * 117.00199 * 179.97438 * 14 13 12 16 16 O 1.21729 * 119.99748 * 359.97438 * 15 14 13 17 17 C 1.41204 * 120.00352 * 180.02562 * 15 14 13 18 18 C 1.35784 * 120.00172 * 180.02562 * 17 15 14 19 19 C 1.41494 * 120.00076 * 179.72113 * 18 17 15 20 20 C 1.37089 * 125.48007 * 179.97438 * 19 18 17 21 21 C 1.37403 * 113.21987 * 179.83945 * 20 19 18 22 22 C 1.33878 * 115.13255 * 0.45912 * 21 20 19 23 23 S 1.70610 * 111.02018 * 359.74289 * 22 21 20 24 24 C 1.38629 * 120.49968 * 0.26513 * 12 11 10 25 25 C 1.37619 * 120.24856 * 359.43422 * 24 12 11 26 26 H 0.96994 * 119.99443 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.13037 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.87183 * 180.02562 * 11 10 9 29 29 H 1.08994 * 109.47755 * 330.00712 * 13 12 11 30 30 H 1.08998 * 109.46975 * 210.00044 * 13 12 11 31 31 H 1.08005 * 119.99701 * 359.97438 * 17 15 14 32 32 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 33 33 H 1.08007 * 123.39283 * 0.02662 * 20 19 18 34 34 H 1.08006 * 122.42906 * 180.19794 * 21 20 19 35 35 H 1.08003 * 124.49190 * 179.74639 * 22 21 20 36 36 H 1.08002 * 119.87068 * 179.70250 * 24 12 11 37 37 H 1.08003 * 120.12549 * 180.27523 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4925 2.6222 0.7962 6 1 3.5857 1.4136 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0493 -1.2345 -0.2848 9 6 1.3515 -2.4072 0.3748 10 6 1.8217 -3.6494 -0.0898 11 6 1.1746 -4.8062 0.2805 12 6 0.0632 -4.7507 1.1074 13 6 -0.6371 -6.0244 1.5053 14 8 -0.0598 -6.5285 2.7115 15 6 -0.5771 -7.6728 3.2070 16 8 -1.4945 -8.2263 2.6293 17 6 -0.0549 -8.2270 4.3961 18 6 -0.5749 -9.3781 4.8943 19 6 -0.0476 -9.9366 6.0826 20 6 -0.4853 -11.0889 6.6827 21 6 0.2092 -11.4016 7.8263 22 6 1.1742 -10.5358 8.1602 23 16 1.2693 -9.2602 7.0313 24 6 -0.4123 -3.5319 1.5662 25 6 0.2227 -2.3630 1.2137 26 1 -0.4849 0.8400 0.0004 27 1 2.6865 -3.6949 -0.7350 28 1 1.5339 -5.7608 -0.0745 29 1 -0.5251 -6.7637 0.7123 30 1 -1.6959 -5.8218 1.6664 31 1 0.7588 -7.7356 4.9090 32 1 -1.3883 -9.8697 4.3812 33 1 -1.2927 -11.6919 6.2940 34 1 -0.0104 -12.2799 8.4154 35 1 1.8085 -10.6321 9.0291 36 1 -1.2818 -3.5002 2.2060 37 1 -0.1469 -1.4149 1.5759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776113993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:18 Heat of formation + Delta-G solvation = -37.138922 kcal Electronic energy + Delta-G solvation = -21133.805417 eV Core-core repulsion = 17739.099304 eV Total energy + Delta-G solvation = -3394.706113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58309 -39.54594 -39.01143 -37.69155 -35.67586 -35.19795 -32.61420 -31.24454 -30.35409 -28.87732 -26.58148 -25.38286 -23.71957 -22.95967 -21.86383 -21.19284 -20.65131 -19.27392 -18.84138 -17.97277 -17.56950 -17.44844 -17.08253 -16.48111 -15.91392 -15.60794 -15.47329 -14.61220 -14.45566 -14.43851 -14.12471 -13.97171 -13.86178 -13.64622 -13.51495 -13.23321 -13.03987 -12.90449 -12.78139 -12.41178 -12.21961 -11.76651 -11.66188 -11.63969 -11.57299 -11.43907 -11.28462 -11.03247 -9.57524 -9.44568 -9.34489 -9.17876 -8.69219 -6.39641 -0.99994 0.55638 0.61130 0.75594 1.02835 1.10137 1.38499 1.44718 1.54449 1.69031 2.09483 2.17572 2.19966 2.73660 3.66661 3.84278 4.00243 4.10320 4.11165 4.16523 4.17141 4.33039 4.47615 4.52441 4.55308 4.56056 4.86133 4.99591 5.07934 5.11745 5.12336 5.29442 5.30593 5.38796 5.46404 5.53055 5.64683 5.87840 6.05101 6.13914 6.31180 6.63616 6.78378 6.88165 6.96680 8.28076 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.002142 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.313499 B =13071.629479 C =13732.804330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.087 3.913 10 C -0.244 4.244 11 C -0.067 4.067 12 C -0.229 4.229 13 C 0.140 3.860 14 O -0.355 6.355 15 C 0.498 3.502 16 O -0.552 6.552 17 C -0.243 4.243 18 C 0.070 3.930 19 C -0.247 4.247 20 C -0.072 4.072 21 C -0.159 4.159 22 C -0.227 4.227 23 S 0.196 5.804 24 C -0.082 4.082 25 C -0.193 4.193 26 H 0.291 0.709 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.191 0.809 36 H 0.105 0.895 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -18.429 15.926 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.264 4.264 11 C -0.085 4.085 12 C -0.231 4.231 13 C 0.067 3.933 14 O -0.272 6.272 15 C 0.349 3.651 16 O -0.448 6.448 17 C -0.264 4.264 18 C 0.050 3.950 19 C -0.364 4.364 20 C -0.104 4.104 21 C -0.189 4.189 22 C -0.365 4.365 23 S 0.466 5.534 24 C -0.100 4.100 25 C -0.213 4.213 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.188 0.812 34 H 0.186 0.814 35 H 0.208 0.792 36 H 0.123 0.877 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.210 -17.120 15.626 23.210 hybrid contribution -0.790 -0.328 -0.211 0.881 sum 0.420 -17.447 15.415 23.285 Atomic orbital electron populations 1.69875 1.09140 1.30874 1.34573 1.26854 0.95531 1.04780 0.91028 0.85147 0.79195 0.75641 0.79476 1.18588 1.18954 1.18119 1.19915 0.98516 0.92368 1.41357 0.90164 1.18053 0.91568 0.93251 0.88682 1.21172 1.04631 0.92905 1.07681 1.20708 0.94075 0.97304 0.96409 1.18997 1.02681 0.92397 1.08993 1.21122 0.95796 0.92837 0.83513 1.86381 1.60060 1.38964 1.41819 1.20179 0.80441 0.78784 0.85710 1.90838 1.30176 1.61838 1.61910 1.21175 1.07040 1.00607 0.97593 1.20861 0.93735 0.90701 0.89700 1.22642 1.06893 1.03830 1.03010 1.21416 1.00008 0.94393 0.94628 1.20344 0.97248 1.02776 0.98521 1.25814 1.04817 0.99860 1.05988 1.83540 1.30268 1.24111 1.15520 1.20772 0.98490 0.92479 0.98269 1.21269 1.00363 0.96937 1.02682 0.89868 0.87783 0.86469 0.91336 0.91877 0.84143 0.83059 0.81194 0.81434 0.79174 0.87662 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.81 10.97 21.83 0.24 -42.57 16 2 C 0.03 1.70 5.14 85.26 0.44 2.14 16 3 Si 0.99 37.78 29.60 68.60 2.03 39.81 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -26.62 9.05 23.46 0.21 -26.41 16 8 H 0.08 4.15 7.91 -2.91 -0.02 4.12 16 9 C 0.09 4.78 5.57 -21.29 -0.12 4.66 16 10 C -0.24 -12.25 9.80 22.73 0.22 -12.03 16 11 C -0.07 -3.04 9.67 22.22 0.21 -2.83 16 12 C -0.23 -10.40 5.53 -19.67 -0.11 -10.51 16 13 C 0.14 5.50 5.49 71.24 0.39 5.90 16 14 O -0.36 -13.53 10.09 -59.21 -0.60 -14.13 16 15 C 0.50 16.69 7.68 68.55 0.53 17.21 16 16 O -0.55 -20.31 15.88 19.09 0.30 -20.01 16 17 C -0.24 -6.27 9.44 22.43 0.21 -6.06 16 18 C 0.07 1.44 9.36 22.50 0.21 1.65 16 19 C -0.25 -4.14 6.21 22.80 0.14 -4.00 16 20 C -0.07 -0.88 10.25 21.80 0.22 -0.65 16 21 C -0.16 -1.57 10.14 21.08 0.21 -1.36 16 22 C -0.23 -2.37 10.92 66.83 0.73 -1.65 16 23 S 0.20 2.93 21.76 -56.49 -1.23 1.70 16 24 C -0.08 -3.96 9.67 22.22 0.21 -3.74 16 25 C -0.19 -10.41 8.70 22.73 0.20 -10.22 16 26 H 0.29 13.62 8.30 -92.71 -0.77 12.86 16 27 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 28 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 30 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 31 H 0.14 3.35 7.04 -2.91 -0.02 3.33 16 32 H 0.15 2.94 7.46 -2.91 -0.02 2.92 16 33 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.10 5.83 6.17 -2.91 -0.02 5.82 16 Total: -1.00 -64.71 343.58 5.76 -58.95 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.09 Total: 24.14 kcal Atomic # 6 Polarization: -51.81 SS G_CDS: 3.92 Total: -47.89 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.24 Total: -42.57 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.29 Total: -34.14 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.23 Total: 1.70 kcal Total: -64.71 5.76 -58.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.814 kcal (2) G-P(sol) polarization free energy of solvation -64.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds