Wall clock time and date at job start Tue Mar 31 2020 10:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47225 * 239.99980 * 3 2 1 5 5 H 1.48500 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47037 * 119.99987 * 3 2 1 7 7 C 1.39945 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00066 * 189.59813 * 7 2 1 9 9 C 1.41401 * 119.99772 * 9.59783 * 7 2 1 10 10 C 1.40710 * 120.24319 * 208.56611 * 9 7 2 11 11 C 1.37618 * 119.74713 * 180.02562 * 10 9 7 12 12 C 1.38642 * 120.24763 * 0.02592 * 11 10 9 13 13 C 1.50699 * 119.75007 * 179.97438 * 12 11 10 14 14 O 1.42896 * 109.47052 * 89.99844 * 13 12 11 15 15 C 1.34973 * 116.99710 * 179.97438 * 14 13 12 16 16 O 1.21692 * 120.00529 * 0.02562 * 15 14 13 17 17 C 1.41416 * 119.99658 * 179.97438 * 15 14 13 18 18 C 1.35371 * 119.99561 * 173.53938 * 17 15 14 19 19 C 1.46637 * 120.00184 * 348.31482 * 18 17 15 20 20 C 1.44545 * 123.50520 * 312.74754 * 19 18 17 21 21 C 1.32726 * 113.09482 * 180.02562 * 20 19 18 22 22 S 1.75495 * 110.65010 * 359.97438 * 21 20 19 23 23 C 1.36338 * 123.50882 * 132.75548 * 19 18 17 24 24 C 1.38628 * 120.49878 * 0.25032 * 12 11 10 25 25 C 1.37626 * 120.24852 * 359.44955 * 24 12 11 26 26 H 0.97005 * 119.99530 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.12874 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.88185 * 180.02562 * 11 10 9 29 29 H 1.08995 * 109.47020 * 329.99897 * 13 12 11 30 30 H 1.09001 * 109.47107 * 210.00071 * 13 12 11 31 31 H 1.07993 * 120.00402 * 353.55005 * 17 15 14 32 32 H 1.08001 * 119.99629 * 168.30434 * 18 17 15 33 33 H 1.08000 * 123.45485 * 0.02562 * 20 19 18 34 34 H 1.08003 * 124.67484 * 180.27113 * 21 20 19 35 35 H 1.08003 * 124.60517 * 359.97438 * 23 19 18 36 36 H 1.07996 * 119.87907 * 179.70452 * 24 12 11 37 37 H 1.08005 * 120.12819 * 180.27319 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0766 -1.2187 0.1554 9 6 1.3157 -2.4278 -0.2053 10 6 1.8029 -3.6236 0.3540 11 6 1.1213 -4.8012 0.1478 12 6 -0.0409 -4.8124 -0.6080 13 6 -0.7780 -6.1084 -0.8272 14 8 -1.7367 -6.2934 0.2162 15 6 -2.4868 -7.4144 0.1673 16 8 -2.3296 -8.2129 -0.7374 17 6 -3.4548 -7.6616 1.1682 18 6 -4.2958 -8.7158 1.0508 19 6 -4.3826 -9.4467 -0.2175 20 6 -4.5151 -8.8003 -1.5035 21 6 -4.5760 -9.6588 -2.5139 22 16 -4.4721 -11.3104 -1.9299 23 6 -4.3469 -10.8068 -0.3064 24 6 -0.5269 -3.6413 -1.1685 25 6 0.1350 -2.4510 -0.9703 26 1 -0.4850 0.8401 0.0004 27 1 2.7083 -3.6173 0.9428 28 1 1.4931 -5.7202 0.5764 29 1 -0.0684 -6.9357 -0.8194 30 1 -1.2894 -6.0773 -1.7893 31 1 -3.5232 -7.0092 2.0261 32 1 -4.9026 -9.0187 1.8912 33 1 -4.5601 -7.7286 -1.6294 34 1 -4.6712 -9.3793 -3.5528 35 1 -4.2518 -11.4743 0.5373 36 1 -1.4305 -3.6623 -1.7595 37 1 -0.2478 -1.5391 -1.4042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:26 Heat of formation + Delta-G solvation = -25.339853 kcal Electronic energy + Delta-G solvation = -21841.302247 eV Core-core repulsion = 18447.107780 eV Total energy + Delta-G solvation = -3394.194467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63832 -39.63416 -38.78970 -37.19578 -35.63688 -34.10701 -32.54107 -31.25027 -30.45347 -29.00196 -26.48891 -25.14276 -23.75756 -22.95831 -21.86633 -21.48504 -19.79883 -19.26459 -18.83620 -18.34250 -17.55851 -17.14354 -17.07568 -16.19459 -15.74582 -15.46571 -15.25393 -15.03996 -14.41019 -14.07339 -13.98574 -13.89930 -13.84809 -13.68056 -13.50598 -13.26373 -13.07759 -12.80725 -12.68532 -12.60547 -12.09054 -11.75654 -11.64807 -11.52233 -11.34668 -11.26143 -11.08923 -10.77992 -9.76227 -9.44593 -9.29524 -8.84314 -8.61813 -6.42249 -0.34545 0.33603 0.76186 0.81665 1.09028 1.15477 1.38731 1.47577 1.51099 1.76718 2.14180 2.18187 2.22675 2.79029 3.67978 3.83450 3.97490 4.09177 4.10922 4.12152 4.35665 4.46580 4.48735 4.53957 4.54567 4.64283 4.83410 4.99297 5.12448 5.16526 5.17436 5.29662 5.34816 5.39477 5.50594 5.63014 5.65157 5.87294 6.05793 6.13108 6.31734 6.64563 6.89292 6.89935 6.96604 8.33262 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.002259 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.269462 B =12393.570348 C =12402.894952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.030 3.970 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.494 4.494 8 H 0.079 0.921 9 C 0.085 3.915 10 C -0.239 4.239 11 C -0.071 4.071 12 C -0.222 4.222 13 C 0.144 3.856 14 O -0.361 6.361 15 C 0.479 3.521 16 O -0.524 6.524 17 C -0.222 4.222 18 C 0.044 3.956 19 C -0.114 4.114 20 C -0.092 4.092 21 C -0.249 4.249 22 S 0.172 5.828 23 C -0.232 4.232 24 C -0.085 4.085 25 C -0.185 4.185 26 H 0.288 0.712 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.164 0.836 32 H 0.189 0.811 33 H 0.122 0.878 34 H 0.172 0.828 35 H 0.189 0.811 36 H 0.105 0.895 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -17.228 0.484 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.082 3.918 10 C -0.258 4.258 11 C -0.089 4.089 12 C -0.223 4.223 13 C 0.071 3.929 14 O -0.278 6.278 15 C 0.328 3.672 16 O -0.417 6.417 17 C -0.242 4.242 18 C 0.024 3.976 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.383 4.383 22 S 0.438 5.562 23 C -0.368 4.368 24 C -0.104 4.104 25 C -0.205 4.205 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.181 0.819 32 H 0.206 0.794 33 H 0.140 0.860 34 H 0.189 0.811 35 H 0.206 0.794 36 H 0.123 0.877 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.371 -18.698 -0.532 21.891 hybrid contribution 0.613 2.477 0.529 2.605 sum -10.758 -16.222 -0.003 19.465 Atomic orbital electron populations 1.69854 1.08933 1.30580 1.36179 1.26831 0.95681 1.04662 0.91264 0.85155 0.78599 0.75291 0.80072 1.18378 1.19212 1.18350 1.19887 0.96026 0.91489 1.44977 0.90262 1.18063 0.92153 0.93201 0.88361 1.21236 1.03614 0.93525 1.07438 1.20708 0.94654 0.97075 0.96468 1.19070 0.99357 0.93655 1.10245 1.21041 0.88601 0.94992 0.88309 1.86398 1.48170 1.42082 1.51156 1.20737 0.81811 0.79006 0.85606 1.90904 1.67887 1.46425 1.36474 1.21617 0.98602 1.02594 1.01344 1.22641 0.91791 0.88411 0.94763 1.19525 1.06451 0.92790 0.94085 1.21116 0.99850 0.99773 0.91402 1.25526 1.12114 0.96980 1.03721 1.82709 1.70490 1.06291 0.96728 1.25725 1.08899 0.98347 1.03849 1.20787 0.98083 0.92492 0.99004 1.21361 0.99465 0.96688 1.02962 0.90095 0.87767 0.86537 0.91672 0.92040 0.81867 0.79384 0.85976 0.81080 0.79391 0.87700 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.60 10.77 21.83 0.24 -43.37 16 2 C 0.03 1.50 5.28 85.26 0.45 1.95 16 3 Si 0.99 38.06 29.57 68.60 2.03 40.09 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.49 -26.69 9.07 23.46 0.21 -26.48 16 8 H 0.08 4.08 7.86 -2.91 -0.02 4.06 16 9 C 0.08 4.63 5.56 -21.29 -0.12 4.51 16 10 C -0.24 -11.87 9.80 22.73 0.22 -11.65 16 11 C -0.07 -3.19 9.67 22.22 0.21 -2.98 16 12 C -0.22 -9.91 5.53 -19.67 -0.11 -10.02 16 13 C 0.14 5.49 5.49 71.24 0.39 5.88 16 14 O -0.36 -13.39 10.09 -58.91 -0.59 -13.99 16 15 C 0.48 15.12 7.17 68.60 0.49 15.61 16 16 O -0.52 -17.99 12.07 19.21 0.23 -17.76 16 17 C -0.22 -5.00 9.93 22.39 0.22 -4.78 16 18 C 0.04 0.76 9.97 23.80 0.24 1.00 16 19 C -0.11 -2.45 4.31 -19.92 -0.09 -2.54 16 20 C -0.09 -2.28 7.40 22.70 0.17 -2.11 16 21 C -0.25 -5.39 11.11 66.65 0.74 -4.65 16 22 S 0.17 3.05 23.02 -56.49 -1.30 1.75 16 23 C -0.23 -4.18 10.83 67.38 0.73 -3.46 16 24 C -0.09 -4.08 9.67 22.22 0.21 -3.87 16 25 C -0.19 -9.94 8.66 22.73 0.20 -9.74 16 26 H 0.29 13.72 8.30 -92.70 -0.77 12.95 16 27 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.06 2.27 8.06 -2.39 -0.02 2.25 16 31 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.12 3.24 7.82 -2.91 -0.02 3.22 16 34 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.11 6.02 6.16 -2.91 -0.02 6.00 16 Total: -1.00 -65.01 338.96 5.87 -59.14 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.09 Total: 27.45 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 4.18 Total: -53.31 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.24 Total: -43.37 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.36 Total: -31.75 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.30 Total: 1.75 kcal Total: -65.01 5.87 -59.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.801 kcal (2) G-P(sol) polarization free energy of solvation -65.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds