Wall clock time and date at job start Tue Mar 31 2020 10:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.50700 * 109.47165 * 119.99955 * 2 1 3 5 5 C 1.37413 * 123.35806 * 294.66056 * 4 2 1 6 6 C 1.33853 * 115.11128 * 179.97438 * 5 4 2 7 7 S 1.70613 * 110.96465 * 0.02562 * 6 5 4 8 8 C 1.36748 * 123.35374 * 114.66484 * 4 2 1 9 9 C 1.46395 * 125.46460 * 359.97438 * 8 4 2 10 10 O 1.21631 * 119.99981 * 5.63187 * 9 8 4 11 11 O 1.34894 * 119.99691 * 185.62867 * 9 8 4 12 12 C 1.45207 * 116.99833 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47175 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46638 * 180.02562 * 13 12 11 15 15 S 1.81005 * 109.46586 * 180.02562 * 14 13 12 16 16 C 1.76207 * 99.99846 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00284 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99604 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47040 * 90.00223 * 20 18 16 22 22 H 1.48495 * 109.47083 * 209.99804 * 20 18 16 23 23 H 1.48497 * 109.47451 * 329.99985 * 20 18 16 24 24 H 1.08997 * 109.47119 * 299.99778 * 1 2 3 25 25 H 1.08999 * 109.47158 * 60.00294 * 1 2 3 26 26 H 1.08996 * 109.46689 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47119 * 240.00222 * 2 1 3 28 28 H 1.09004 * 109.47101 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47313 * 300.00222 * 3 2 1 30 30 H 1.09005 * 109.47301 * 59.99944 * 3 2 1 31 31 H 1.08000 * 122.44067 * 359.97438 * 5 4 2 32 32 H 1.08003 * 124.51674 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47238 * 300.00546 * 12 11 9 34 34 H 1.09007 * 109.46906 * 60.00090 * 12 11 9 35 35 H 1.08991 * 109.47411 * 300.00039 * 13 12 11 36 36 H 1.09002 * 109.46884 * 60.00717 * 13 12 11 37 37 H 1.08999 * 109.46938 * 299.99709 * 14 13 12 38 38 H 1.08994 * 109.47226 * 60.00391 * 14 13 12 39 39 H 0.97001 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8328 -0.2431 2.5072 6 6 2.3494 -1.0056 3.4784 7 16 3.1294 -2.3767 2.8284 8 6 2.7324 -1.8843 1.1877 9 6 3.0927 -2.6146 -0.0288 10 8 2.8559 -2.1326 -1.1201 11 8 3.6874 -3.8221 0.0606 12 6 4.0159 -4.4891 -1.1867 13 6 4.6793 -5.8346 -0.8862 14 6 5.0260 -6.5370 -2.2005 15 16 5.8101 -8.1292 -1.8450 16 6 6.0946 -8.7034 -3.4864 17 1 5.7966 -8.0978 -4.3296 18 6 6.7008 -9.9343 -3.6957 19 7 7.0636 -10.6726 -2.6681 20 14 7.0017 -10.5433 -5.4359 21 1 8.3376 -10.0864 -5.8961 22 1 6.9521 -12.0273 -5.4564 23 1 5.9548 -10.0005 -6.3383 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.2980 0.6726 2.7119 32 1 2.2815 -0.7826 4.5330 33 1 3.1047 -4.6532 -1.7619 34 1 4.7015 -3.8667 -1.7619 35 1 5.5905 -5.6701 -0.3113 36 1 3.9940 -6.4571 -0.3109 37 1 4.1149 -6.7016 -2.7758 38 1 5.7113 -5.9144 -2.7755 39 1 7.4868 -11.5330 -2.8144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805423067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:47 Heat of formation + Delta-G solvation = -79.501149 kcal Electronic energy + Delta-G solvation = -20428.630204 eV Core-core repulsion = 17167.531078 eV Total energy + Delta-G solvation = -3261.099126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58084 -38.95773 -36.56295 -34.37766 -33.51080 -32.44628 -30.34348 -27.38858 -26.82933 -25.59171 -24.92502 -22.43608 -21.79934 -21.32967 -19.05378 -18.26895 -17.45367 -16.75673 -16.62682 -16.37737 -15.28153 -14.82063 -14.78339 -14.45113 -14.21335 -13.93426 -13.85008 -13.35772 -13.00595 -12.92642 -12.71798 -12.67179 -12.36391 -12.10948 -11.74439 -11.44209 -11.40411 -11.36319 -11.15523 -11.00377 -10.94428 -10.88823 -10.67508 -10.30702 -10.12898 -9.63875 -9.21126 -9.07925 -8.76145 -8.36174 -6.56860 -6.25063 -3.96137 0.10742 1.18040 1.62180 1.95686 2.49619 2.72179 3.21240 3.22113 3.28753 3.54052 4.19680 4.42256 4.54068 4.70601 4.83011 4.94547 5.01654 5.09691 5.12287 5.16535 5.29641 5.33140 5.36611 5.40471 5.47860 5.56402 5.65391 5.76305 5.76743 5.81113 5.87009 5.97698 5.99333 6.08755 6.24055 6.44202 6.52429 6.67172 7.58832 7.62469 8.34600 9.21347 10.83082 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.002222 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.547127 B =12598.607605 C =13393.937947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.002 4.002 5 C -0.150 4.150 6 C -0.233 4.233 7 S 0.252 5.748 8 C -0.268 4.268 9 C 0.541 3.459 10 O -0.497 6.497 11 O -0.352 6.352 12 C 0.075 3.925 13 C -0.098 4.098 14 C -0.114 4.114 15 S -0.124 6.124 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.869 5.869 20 Si 0.920 3.080 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.119 0.881 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 23.014 12.062 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 C -0.196 4.196 4 C -0.017 4.017 5 C -0.181 4.181 6 C -0.371 4.371 7 S 0.523 5.477 8 C -0.386 4.386 9 C 0.385 3.615 10 O -0.388 6.388 11 O -0.269 6.269 12 C 0.000 4.000 13 C -0.137 4.137 14 C -0.263 4.263 15 S 0.104 5.896 16 C -0.666 4.666 17 H 0.092 0.908 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.188 0.812 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.508 21.165 13.460 27.194 hybrid contribution -0.860 1.421 -2.797 3.253 sum -11.368 22.585 10.663 27.441 Atomic orbital electron populations 1.21774 0.93968 1.02015 1.01808 1.20461 0.96088 0.96210 0.96392 1.21791 1.01262 0.94764 1.01806 1.19506 0.94064 0.91871 0.96288 1.19793 1.04857 1.02721 0.90726 1.25516 1.05305 1.01381 1.04863 1.83476 1.49610 1.20047 0.94597 1.23445 1.15656 1.02880 0.96603 1.19578 0.74592 0.79709 0.87623 1.90762 1.51722 1.67699 1.28592 1.86567 1.71047 1.30986 1.38283 1.23318 1.00555 0.93558 0.82547 1.21294 1.01487 0.92481 0.98399 1.23176 1.03040 1.01987 0.98063 1.84660 1.76737 1.13929 1.14233 1.22694 1.46070 1.06764 0.91074 0.90835 1.25021 0.94813 0.95636 0.98314 1.70019 1.38581 1.11902 1.29986 0.86146 0.78792 0.77901 0.82581 1.20238 1.20734 1.19658 0.92754 0.92000 0.92629 0.86318 0.92579 0.92034 0.92757 0.83745 0.81171 0.90929 0.90939 0.90292 0.90285 0.91699 0.91695 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.09 37.16 0.34 -0.79 16 2 C -0.07 -0.69 3.07 -91.77 -0.28 -0.98 16 3 C -0.14 -1.09 8.99 37.16 0.33 -0.75 16 4 C 0.00 -0.02 4.72 -105.46 -0.50 -0.51 16 5 C -0.15 -1.18 9.18 -41.42 -0.38 -1.56 16 6 C -0.23 -1.66 10.92 29.19 0.32 -1.35 16 7 S 0.25 2.29 22.93 -107.50 -2.47 -0.17 16 8 C -0.27 -3.14 6.45 -36.84 -0.24 -3.37 16 9 C 0.54 7.63 7.91 34.01 0.27 7.90 16 10 O -0.50 -7.77 13.79 -19.37 -0.27 -8.04 16 11 O -0.35 -5.10 10.08 -41.02 -0.41 -5.51 16 12 C 0.08 1.10 5.48 37.16 0.20 1.30 16 13 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 14 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 15 S -0.12 -3.21 21.44 -107.50 -2.30 -5.52 16 16 C -0.52 -14.78 9.50 30.94 0.29 -14.48 16 17 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 18 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 19 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H 0.05 0.37 8.00 -51.93 -0.42 -0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.12 1.45 4.96 -51.93 -0.26 1.20 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.35 7.50 -51.93 -0.39 -0.04 16 31 H 0.14 0.84 7.67 -52.49 -0.40 0.44 16 32 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -31.74 358.12 -9.68 -41.42 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.66 Total: -2.44 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 0.32 Total: -16.49 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.73 Total: -25.13 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.68 Total: -13.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -4.77 Total: -5.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.74 -9.68 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805423067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.081 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds