Wall clock time and date at job start Tue Mar 31 2020 10:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.50700 * 109.47165 * 119.99955 * 2 1 3 5 5 C 1.37413 * 123.35806 * 294.66056 * 4 2 1 6 6 C 1.33853 * 115.11128 * 179.97438 * 5 4 2 7 7 S 1.70613 * 110.96465 * 0.02562 * 6 5 4 8 8 C 1.36748 * 123.35374 * 114.66484 * 4 2 1 9 9 C 1.46395 * 125.46460 * 359.97438 * 8 4 2 10 10 O 1.21631 * 119.99981 * 5.63187 * 9 8 4 11 11 O 1.34894 * 119.99691 * 185.62867 * 9 8 4 12 12 C 1.45207 * 116.99833 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47175 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46638 * 180.02562 * 13 12 11 15 15 S 1.81005 * 109.46586 * 180.02562 * 14 13 12 16 16 C 1.76207 * 99.99846 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00284 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99604 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47040 * 90.00223 * 20 18 16 22 22 H 1.48495 * 109.47083 * 209.99804 * 20 18 16 23 23 H 1.48497 * 109.47451 * 329.99985 * 20 18 16 24 24 H 1.08997 * 109.47119 * 299.99778 * 1 2 3 25 25 H 1.08999 * 109.47158 * 60.00294 * 1 2 3 26 26 H 1.08996 * 109.46689 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47119 * 240.00222 * 2 1 3 28 28 H 1.09004 * 109.47101 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47313 * 300.00222 * 3 2 1 30 30 H 1.09005 * 109.47301 * 59.99944 * 3 2 1 31 31 H 1.08000 * 122.44067 * 359.97438 * 5 4 2 32 32 H 1.08003 * 124.51674 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47238 * 300.00546 * 12 11 9 34 34 H 1.09007 * 109.46906 * 60.00090 * 12 11 9 35 35 H 1.08991 * 109.47411 * 300.00039 * 13 12 11 36 36 H 1.09002 * 109.46884 * 60.00717 * 13 12 11 37 37 H 1.08999 * 109.46938 * 299.99709 * 14 13 12 38 38 H 1.08994 * 109.47226 * 60.00391 * 14 13 12 39 39 H 0.97001 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8328 -0.2431 2.5072 6 6 2.3494 -1.0056 3.4784 7 16 3.1294 -2.3767 2.8284 8 6 2.7324 -1.8843 1.1877 9 6 3.0927 -2.6146 -0.0288 10 8 2.8559 -2.1326 -1.1201 11 8 3.6874 -3.8221 0.0606 12 6 4.0159 -4.4891 -1.1867 13 6 4.6793 -5.8346 -0.8862 14 6 5.0260 -6.5370 -2.2005 15 16 5.8101 -8.1292 -1.8450 16 6 6.0946 -8.7034 -3.4864 17 1 5.7966 -8.0978 -4.3296 18 6 6.7008 -9.9343 -3.6957 19 7 7.0636 -10.6726 -2.6681 20 14 7.0017 -10.5433 -5.4359 21 1 8.3376 -10.0864 -5.8961 22 1 6.9521 -12.0273 -5.4564 23 1 5.9548 -10.0005 -6.3383 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.2980 0.6726 2.7119 32 1 2.2815 -0.7826 4.5330 33 1 3.1047 -4.6532 -1.7619 34 1 4.7015 -3.8667 -1.7619 35 1 5.5905 -5.6701 -0.3113 36 1 3.9940 -6.4571 -0.3109 37 1 4.1149 -6.7016 -2.7758 38 1 5.7113 -5.9144 -2.7755 39 1 7.4868 -11.5330 -2.8144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805423067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:46 Heat of formation + Delta-G solvation = -95.500266 kcal Electronic energy + Delta-G solvation = -20429.323978 eV Core-core repulsion = 17167.531078 eV Total energy + Delta-G solvation = -3261.792900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61494 -39.75353 -37.68364 -35.09426 -34.88066 -34.58981 -31.14851 -28.25783 -28.00600 -27.53159 -25.86188 -23.31858 -22.76699 -22.49729 -20.04187 -19.49522 -19.12905 -17.81553 -17.68234 -17.13365 -16.90564 -16.40102 -16.06759 -15.76908 -15.14880 -14.86750 -14.75850 -14.45822 -14.19184 -14.05963 -13.88051 -13.54166 -13.43495 -13.15107 -12.96394 -12.94824 -12.66863 -12.44920 -12.43765 -12.39387 -12.25201 -12.07193 -11.63784 -11.57607 -11.54823 -11.15695 -11.00056 -10.37714 -9.93839 -9.44775 -8.69316 -8.38869 -6.15611 -0.65818 0.46158 0.95824 1.18424 1.24396 1.39285 1.39730 1.50826 1.81020 1.83877 2.26118 2.95681 3.27277 3.62016 3.78890 3.81124 3.93136 3.94586 4.12408 4.23196 4.27720 4.29773 4.36436 4.47100 4.63045 4.67347 4.75363 4.80027 4.96146 4.98160 5.00217 5.04308 5.12438 5.18999 5.28111 5.33194 5.36376 5.39180 5.67906 6.17050 6.55242 7.03578 8.70504 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.002222 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.547127 B =12598.607605 C =13393.937947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.134 4.134 4 C 0.006 3.994 5 C -0.159 4.159 6 C -0.206 4.206 7 S 0.248 5.752 8 C -0.311 4.311 9 C 0.537 3.463 10 O -0.522 6.522 11 O -0.357 6.357 12 C 0.083 3.917 13 C -0.086 4.086 14 C -0.091 4.091 15 S -0.184 6.184 16 C -0.540 4.540 17 H 0.074 0.926 18 C 0.016 3.984 19 N -0.906 5.906 20 Si 0.995 3.005 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.264 1.264 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.206 0.794 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 24.884 12.766 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.011 4.011 5 C -0.189 4.189 6 C -0.343 4.343 7 S 0.518 5.482 8 C -0.429 4.429 9 C 0.384 3.616 10 O -0.415 6.415 11 O -0.274 6.274 12 C 0.008 3.992 13 C -0.124 4.124 14 C -0.240 4.240 15 S 0.044 5.956 16 C -0.688 4.688 17 H 0.092 0.908 18 C -0.190 4.190 19 N -0.543 5.543 20 Si 0.816 3.184 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.188 1.188 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.223 0.777 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.471 23.042 14.179 29.386 hybrid contribution -0.621 0.957 -2.903 3.119 sum -12.092 23.999 11.276 29.143 Atomic orbital electron populations 1.21749 0.92716 1.01484 1.03190 1.20458 0.97127 0.96991 0.95139 1.21766 1.00532 0.93647 1.03215 1.19809 0.92732 0.91071 0.97511 1.20021 1.05422 1.03882 0.89564 1.25946 1.02605 0.99384 1.06416 1.83479 1.50105 1.21342 0.93230 1.23445 1.18494 1.04141 0.96820 1.20032 0.73922 0.79250 0.88428 1.90753 1.52895 1.68101 1.29713 1.86549 1.71410 1.31588 1.37806 1.23079 1.00623 0.92663 0.82875 1.21106 1.01739 0.93150 0.96418 1.23055 1.02459 0.98497 0.99974 1.84637 1.77955 1.18390 1.14590 1.23048 1.46501 1.07451 0.91778 0.90780 1.26069 0.94201 0.95659 1.03027 1.70147 1.39251 1.12403 1.32473 0.85006 0.79023 0.77512 0.76810 1.19265 1.19867 1.18779 0.90721 0.91268 0.94095 0.89389 0.93689 0.91350 0.90631 0.80983 0.77677 0.90610 0.90602 0.90200 0.90221 0.91287 0.91250 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.09 71.98 0.65 -1.34 16 2 C -0.08 -1.44 3.07 -11.54 -0.04 -1.47 16 3 C -0.13 -1.89 8.99 71.98 0.65 -1.24 16 4 C 0.01 0.11 4.72 -20.41 -0.10 0.01 16 5 C -0.16 -2.02 9.18 21.08 0.19 -1.83 16 6 C -0.21 -2.26 10.92 66.82 0.73 -1.53 16 7 S 0.25 4.20 22.93 -56.49 -1.30 2.90 16 8 C -0.31 -7.23 6.45 24.05 0.16 -7.08 16 9 C 0.54 15.56 7.91 69.95 0.55 16.11 16 10 O -0.52 -16.97 13.79 19.41 0.27 -16.70 16 11 O -0.36 -10.48 10.08 -58.08 -0.59 -11.06 16 12 C 0.08 2.43 5.48 71.98 0.39 2.83 16 13 C -0.09 -2.81 5.60 30.60 0.17 -2.64 16 14 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 15 S -0.18 -9.78 21.44 -56.49 -1.21 -10.99 16 16 C -0.54 -31.19 9.50 67.95 0.65 -30.54 16 17 H 0.07 4.12 7.80 -2.91 -0.02 4.09 16 18 C 0.02 0.88 5.49 84.86 0.47 1.35 16 19 N -0.91 -54.64 13.22 21.65 0.29 -54.36 16 20 Si 0.99 44.01 29.55 68.60 2.03 46.03 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H 0.07 0.80 8.00 -2.39 -0.02 0.78 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 2.23 4.96 -2.39 -0.01 2.22 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.73 7.50 -2.38 -0.02 0.71 16 31 H 0.17 1.23 7.67 -2.91 -0.02 1.21 16 32 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.70 8.14 -2.40 -0.02 2.68 16 38 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -70.08 358.12 5.41 -64.67 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.04 Total: 10.10 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.89 Total: -30.60 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.29 Total: -54.36 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.32 Total: -27.76 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -2.51 Total: -8.09 kcal Total: -70.08 5.41 -64.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805423067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.830 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds