Wall clock time and date at job start Tue Mar 31 2020 10:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35641 * 116.99488 * 2 1 4 4 C 1.38627 * 120.14336 * 0.27484 * 3 2 1 5 5 C 1.38138 * 120.15881 * 180.25368 * 4 3 2 6 6 C 1.38423 * 120.45186 * 359.74579 * 5 4 3 7 7 C 1.38122 * 120.27788 * 359.97438 * 6 5 4 8 8 F 1.35093 * 120.08400 * 180.02562 * 7 6 5 9 9 C 1.40027 * 119.82825 * 0.02562 * 7 6 5 10 10 C 1.47243 * 120.22019 * 179.97438 * 9 7 6 11 11 O 1.21530 * 119.99750 * 89.99744 * 10 9 7 12 12 O 1.34765 * 119.99968 * 270.00073 * 10 9 7 13 13 C 1.45206 * 116.99970 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46997 * 180.02562 * 14 13 12 16 16 S 1.80994 * 109.47387 * 180.02562 * 15 14 13 17 17 C 1.76194 * 100.00276 * 179.97438 * 16 15 14 18 18 H 1.08011 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00539 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99522 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00399 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47307 * 89.99626 * 21 19 17 23 23 H 1.48502 * 109.47051 * 210.00321 * 21 19 17 24 24 H 1.48504 * 109.47161 * 329.99871 * 21 19 17 25 25 H 1.08993 * 109.47011 * 60.00311 * 1 2 3 26 26 H 1.09006 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47248 * 300.00067 * 1 2 3 28 28 H 1.07999 * 119.91970 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.77138 * 179.72151 * 5 4 3 30 30 H 1.08004 * 119.86134 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47070 * 300.00007 * 13 12 10 32 32 H 1.09001 * 109.46626 * 60.00025 * 13 12 10 33 33 H 1.09000 * 109.47486 * 299.99948 * 14 13 12 34 34 H 1.09001 * 109.47362 * 60.00671 * 14 13 12 35 35 H 1.09000 * 109.46866 * 300.00212 * 15 14 13 36 36 H 1.08996 * 109.47261 * 59.99820 * 15 14 13 37 37 H 0.96995 * 119.99998 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2926 2.3731 0.0058 5 6 1.9192 3.6041 0.0005 6 6 3.3009 3.6880 -0.0053 7 6 4.0683 2.5395 -0.0053 8 9 5.4165 2.6259 -0.0104 9 6 3.4453 1.2855 0.0000 10 6 4.2549 0.0557 -0.0005 11 8 4.5933 -0.4494 1.0518 12 8 4.6208 -0.5097 -1.1678 13 6 5.4189 -1.7204 -1.0923 14 6 5.7341 -2.2123 -2.5064 15 6 6.5746 -3.4883 -2.4269 16 16 6.9482 -4.0700 -4.0996 17 6 7.8964 -5.5056 -3.7198 18 1 8.0801 -5.7746 -2.6900 19 6 8.4073 -6.2910 -4.7439 20 7 8.1839 -5.9628 -5.9990 21 14 9.4119 -7.8134 -4.3412 22 1 8.5088 -8.9867 -4.2275 23 1 10.4018 -8.0534 -5.4219 24 1 10.1241 -7.6103 -3.0540 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2140 2.3176 0.0098 29 1 1.3271 4.5073 0.0004 30 1 3.7809 4.6555 -0.0098 31 1 6.3492 -1.5099 -0.5646 32 1 4.8628 -2.4892 -0.5560 33 1 4.8037 -2.4228 -3.0338 34 1 6.2901 -1.4435 -3.0431 35 1 7.5051 -3.2782 -1.8994 36 1 6.0184 -4.2570 -1.8904 37 1 8.5412 -6.5114 -6.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805466781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:20 Heat of formation + Delta-G solvation = -150.938400 kcal Electronic energy + Delta-G solvation = -22579.754722 eV Core-core repulsion = 18749.344668 eV Total energy + Delta-G solvation = -3830.410054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.40301 -40.99331 -39.88841 -37.75619 -36.59117 -33.48679 -32.42638 -31.94616 -30.49620 -27.94156 -26.75922 -25.51897 -24.47607 -22.79215 -21.47227 -21.22094 -19.06111 -18.05065 -17.66060 -17.38006 -17.06319 -16.55216 -16.34852 -16.18323 -15.84203 -15.43325 -15.13278 -14.80161 -14.43918 -14.35986 -13.50759 -13.37463 -13.02236 -12.97498 -12.75084 -12.64908 -12.28351 -12.09690 -11.86996 -11.58838 -11.31587 -11.11507 -10.95874 -10.90318 -10.71177 -10.58153 -10.23865 -9.62507 -9.44532 -9.05764 -8.88821 -8.33069 -6.54101 -6.22856 -3.93602 0.37546 0.68331 1.97134 2.48535 2.52612 2.96577 3.22793 3.23741 3.30284 3.55509 3.78070 4.15372 4.21979 4.35144 4.43586 4.55780 4.68762 4.70519 4.72647 5.06288 5.12962 5.16913 5.22708 5.24005 5.39998 5.44093 5.47632 5.53563 5.70798 5.81784 5.91955 6.06694 6.18402 6.40858 6.49115 6.68562 6.70926 7.61077 7.62663 8.36935 9.23495 10.85370 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002321 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.896733 B =12062.062229 C =12496.659978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.199 3.801 4 C -0.222 4.222 5 C -0.029 4.029 6 C -0.192 4.192 7 C 0.181 3.819 8 F -0.121 7.121 9 C -0.178 4.178 10 C 0.526 3.474 11 O -0.491 6.491 12 O -0.343 6.343 13 C 0.071 3.929 14 C -0.097 4.097 15 C -0.114 4.114 16 S -0.124 6.124 17 C -0.517 4.517 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.552 20.549 12.687 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.152 3.848 4 C -0.240 4.240 5 C -0.047 4.047 6 C -0.211 4.211 7 C 0.161 3.839 8 F -0.099 7.099 9 C -0.181 4.181 10 C 0.367 3.633 11 O -0.378 6.378 12 O -0.259 6.259 13 C -0.004 4.004 14 C -0.136 4.136 15 C -0.263 4.263 16 S 0.104 5.896 17 C -0.666 4.666 18 H 0.092 0.908 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.544 20.517 11.774 29.451 hybrid contribution 1.067 -1.478 1.482 2.349 sum -16.476 19.039 13.256 28.455 Atomic orbital electron populations 1.23246 0.76813 1.05056 1.01830 1.86115 1.22638 1.25809 1.87066 1.18526 0.89353 0.85452 0.91517 1.21254 1.00868 0.91485 1.10426 1.20953 0.93445 0.97661 0.92622 1.21005 0.94299 0.97531 1.08271 1.17230 0.77298 0.91932 0.97448 1.91586 1.28410 1.96855 1.93017 1.18282 0.91257 0.91345 1.17169 1.20458 0.77064 0.83248 0.82527 1.90874 1.51902 1.62198 1.32827 1.86634 1.64966 1.41281 1.33037 1.23347 0.94136 0.82964 0.99922 1.21286 1.01325 0.97278 0.93684 1.23180 1.00989 0.97833 1.04253 1.84649 1.69248 1.33087 1.02581 1.22702 1.37797 1.10660 0.95404 0.90836 1.25020 0.96121 0.98156 0.94498 1.70020 1.43508 1.38367 0.98638 0.86145 0.79444 0.81597 0.78227 1.20252 1.20740 1.19654 0.91789 0.87391 0.92001 0.83762 0.83842 0.83454 0.90969 0.90931 0.90298 0.90289 0.91680 0.91690 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.25 9.95 -18.62 -0.19 -3.44 16 3 C 0.20 2.08 6.70 -38.68 -0.26 1.82 16 4 C -0.22 -1.48 9.03 -39.47 -0.36 -1.83 16 5 C -0.03 -0.16 10.02 -39.55 -0.40 -0.56 16 6 C -0.19 -1.42 10.00 -39.56 -0.40 -1.82 16 7 C 0.18 2.02 7.29 -38.95 -0.28 1.74 16 8 F -0.12 -1.53 16.83 2.25 0.04 -1.49 16 9 C -0.18 -2.30 5.77 -104.81 -0.60 -2.91 16 10 C 0.53 8.46 6.57 34.39 0.23 8.69 16 11 O -0.49 -8.99 16.90 -19.29 -0.33 -9.32 16 12 O -0.34 -5.62 10.23 -40.67 -0.42 -6.04 16 13 C 0.07 1.15 5.48 37.16 0.20 1.35 16 14 C -0.10 -1.70 5.60 -26.73 -0.15 -1.85 16 15 C -0.11 -2.36 5.67 37.16 0.21 -2.15 16 16 S -0.12 -3.28 21.44 -107.50 -2.30 -5.58 16 17 C -0.52 -14.98 9.50 30.94 0.29 -14.69 16 18 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 19 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 20 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 21 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 26 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 28 H 0.14 0.52 6.29 -52.49 -0.33 0.19 16 29 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 30 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -35.15 347.20 -7.34 -42.49 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.47 Total: -4.03 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.62 Total: -9.13 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.73 Total: -25.41 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.93 Total: -18.79 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.30 Total: -5.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.15 -7.34 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805466781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.448 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds