Wall clock time and date at job start Tue Mar 31 2020 10:29:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35965 * 116.99918 * 2 1
4 4 C 1.38298 * 119.99167 * 359.71965 * 3 2 1
5 5 C 1.39661 * 119.81687 * 179.73363 * 4 3 2
6 6 C 1.47607 * 120.10615 * 180.24879 * 5 4 3
7 7 O 1.21483 * 119.99708 * 0.31829 * 6 5 4
8 8 O 1.34724 * 120.00246 * 180.30988 * 6 5 4
9 9 C 1.45194 * 117.00013 * 180.02562 * 8 6 5
10 10 C 1.53003 * 109.47282 * 180.02562 * 9 8 6
11 11 C 1.52995 * 109.47258 * 180.02562 * 10 9 8
12 12 S 1.81007 * 109.47245 * 179.97438 * 11 10 9
13 13 C 1.76199 * 100.00155 * 180.02562 * 12 11 10
14 14 H 1.08002 * 120.00099 * 359.97438 * 13 12 11
15 15 C 1.38797 * 120.00066 * 180.02562 * 13 12 11
16 16 N 1.31625 * 119.99897 * 179.97438 * 15 13 12
17 17 Si 1.86805 * 119.99952 * 359.97438 * 15 13 12
18 18 H 1.48504 * 109.46618 * 90.00411 * 17 15 13
19 19 H 1.48488 * 109.47077 * 210.00387 * 17 15 13
20 20 H 1.48498 * 109.47031 * 330.00801 * 17 15 13
21 21 C 1.39708 * 119.79419 * 0.56488 * 5 4 3
22 22 C 1.37872 * 119.97211 * 359.70674 * 21 5 4
23 23 C 1.38544 * 120.18923 * 0.02562 * 22 21 5
24 24 F 1.35098 * 119.89685 * 180.02562 * 23 22 21
25 25 H 1.09002 * 109.47382 * 300.00462 * 1 2 3
26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3
27 27 H 1.09004 * 109.46926 * 60.00569 * 1 2 3
28 28 H 1.07996 * 120.08986 * 0.02562 * 4 3 2
29 29 H 1.09003 * 109.47700 * 300.00436 * 9 8 6
30 30 H 1.08997 * 109.47092 * 60.00605 * 9 8 6
31 31 H 1.09007 * 109.46562 * 299.99958 * 10 9 8
32 32 H 1.08997 * 109.47138 * 59.99929 * 10 9 8
33 33 H 1.09003 * 109.47483 * 299.99585 * 11 10 9
34 34 H 1.09006 * 109.47498 * 60.00004 * 11 10 9
35 35 H 0.97002 * 119.99879 * 179.97438 * 16 15 13
36 36 H 1.07990 * 120.01346 * 179.68287 * 21 5 4
37 37 H 1.08001 * 119.90539 * 179.97438 * 22 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 1.2929 2.3712 -0.0059
5 6 1.9307 3.6137 -0.0002
6 6 1.1328 4.8555 -0.0009
7 8 -0.0807 4.7978 -0.0005
8 8 1.7502 6.0529 -0.0017
9 6 0.9025 7.2317 -0.0017
10 6 1.7758 8.4880 -0.0034
11 6 0.8825 9.7301 -0.0028
12 16 1.9156 11.2164 -0.0040
13 6 0.6655 12.4580 -0.0023
14 1 -0.3768 12.1750 -0.0014
15 6 1.0201 13.7999 -0.0032
16 7 0.0862 14.7275 -0.0024
17 14 2.8229 14.2895 -0.0054
18 1 3.2988 14.4189 -1.4062
19 1 2.9836 15.5895 0.6940
20 1 3.6192 13.2493 0.6939
21 6 3.3263 3.6776 -0.0006
22 6 4.0690 2.5160 -0.0005
23 6 3.4353 1.2839 -0.0005
24 9 4.1689 0.1495 0.0002
25 1 -0.3634 0.5139 0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 -0.8901
28 1 0.2143 2.3162 -0.0100
29 1 0.2726 7.2263 -0.8913
30 1 0.2738 7.2271 0.8886
31 1 2.4059 8.4936 0.8861
32 1 2.4042 8.4925 -0.8939
33 1 0.2520 9.7248 -0.8920
34 1 0.2543 9.7255 0.8880
35 1 0.3341 15.6653 -0.0026
36 1 3.8231 4.6364 -0.0014
37 1 5.1478 2.5667 -0.0012
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000805498596.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:29:26
Heat of formation + Delta-G solvation = -153.946785 kcal
Electronic energy + Delta-G solvation = -22038.268427 eV
Core-core repulsion = 18207.727920 eV
Total energy + Delta-G solvation = -3830.540507 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.082 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-49.33146 -41.01501 -40.08073 -37.89438 -36.80018 -33.70320 -32.48425 -31.57231
-30.91022 -28.09011 -26.78435 -25.67469 -24.37937 -23.05677 -21.61509 -21.36820
-19.12041 -18.11578 -17.49512 -17.46752 -16.85234 -16.83227 -16.63980 -16.59870
-15.56353 -15.04774 -15.03562 -14.85495 -14.83384 -14.61913 -13.73736 -13.38677
-13.17849 -13.13735 -12.86391 -12.68892 -12.54235 -12.22826 -11.84742 -11.69447
-11.57969 -11.28900 -11.13936 -11.02576 -10.91413 -10.44405 -10.31315 -9.85661
-9.58413 -9.05235 -8.83048 -8.65055 -7.01532 -6.32583 -4.06281 0.02342
0.65521 2.08505 2.26256 2.57272 2.96840 3.11010 3.26890 3.41440
3.51369 3.60045 4.11726 4.25059 4.28092 4.38067 4.53165 4.66383
4.67650 4.73786 4.90253 4.97063 5.02100 5.05852 5.06403 5.21972
5.30512 5.31876 5.53573 5.61978 5.63007 5.72958 5.96159 5.97800
6.23799 6.27794 6.50187 6.64241 7.47259 7.90951 8.40194 9.12671
10.76760
Molecular weight = 314.08amu
Principal moments of inertia in cm(-1)
A = 0.034242 B = 0.002007 C = 0.001900
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 817.506006 B =13945.336405 C =14731.789179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.307 6.307
3 C 0.084 3.916
4 C -0.121 4.121
5 C -0.094 4.094
6 C 0.509 3.491
7 O -0.503 6.503
8 O -0.348 6.348
9 C 0.073 3.927
10 C -0.101 4.101
11 C -0.085 4.085
12 S -0.206 6.206
13 C -0.505 4.505
14 H 0.089 0.911
15 C 0.092 3.908
16 N -0.880 5.880
17 Si 0.862 3.138
18 H -0.268 1.268
19 H -0.275 1.275
20 H -0.237 1.237
21 C -0.066 4.066
22 C -0.128 4.128
23 C 0.104 3.896
24 F -0.125 7.125
25 H 0.061 0.939
26 H 0.106 0.894
27 H 0.061 0.939
28 H 0.154 0.846
29 H 0.074 0.926
30 H 0.074 0.926
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.071 0.929
34 H 0.072 0.928
35 H 0.271 0.729
36 H 0.155 0.845
37 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.358 -29.281 0.079 29.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.221 6.221
3 C 0.038 3.962
4 C -0.140 4.140
5 C -0.096 4.096
6 C 0.353 3.647
7 O -0.392 6.392
8 O -0.264 6.264
9 C -0.002 4.002
10 C -0.140 4.140
11 C -0.233 4.233
12 S 0.022 5.978
13 C -0.653 4.653
14 H 0.107 0.893
15 C -0.117 4.117
16 N -0.516 5.516
17 Si 0.687 3.313
18 H -0.193 1.193
19 H -0.200 1.200
20 H -0.161 1.161
21 C -0.084 4.084
22 C -0.147 4.147
23 C 0.084 3.916
24 F -0.104 7.104
25 H 0.080 0.920
26 H 0.125 0.875
27 H 0.080 0.920
28 H 0.171 0.829
29 H 0.092 0.908
30 H 0.093 0.907
31 H 0.099 0.901
32 H 0.098 0.902
33 H 0.090 0.910
34 H 0.091 0.909
35 H 0.081 0.919
36 H 0.173 0.827
37 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 6.165 -29.165 0.080 29.809
hybrid contribution -1.054 0.391 -0.033 1.124
sum 5.111 -28.774 0.048 29.224
Atomic orbital electron populations
1.23216 0.77288 1.04690 1.02056 1.86161 1.22210 1.24924 1.88758
1.18757 0.90714 0.85681 1.01085 1.21219 1.01395 0.89702 1.01638
1.18956 0.93464 0.90436 1.06702 1.20897 0.86357 0.84217 0.73193
1.90851 1.14861 1.88033 1.45475 1.86499 1.41830 1.14627 1.83485
1.23301 0.92817 0.80979 1.03059 1.21340 0.98162 0.89959 1.04507
1.22947 1.00550 0.95535 1.04277 1.84166 1.16211 0.99850 1.97561
1.22114 0.93261 0.91178 1.58705 0.89293 1.24798 0.98230 0.95354
0.93296 1.69934 1.32944 1.00759 1.47999 0.86668 0.85124 0.79794
0.79747 1.19313 1.20037 1.16144 1.21354 0.92035 0.99393 0.95666
1.21060 1.01752 0.89599 1.02277 1.17300 0.85974 0.83167 1.05194
1.91537 1.76491 1.48679 1.93647 0.92028 0.87533 0.92026 0.82856
0.90758 0.90750 0.90147 0.90155 0.90979 0.90935 0.91903 0.82705
0.82810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 9.81 101.05 0.99 1.11 16
2 O -0.31 -2.69 10.36 -19.63 -0.20 -2.89 16
3 C 0.08 0.76 6.69 -39.24 -0.26 0.49 16
4 C -0.12 -1.08 8.58 -39.03 -0.33 -1.41 16
5 C -0.09 -0.91 5.87 -104.99 -0.62 -1.53 16
6 C 0.51 6.16 7.89 34.55 0.27 6.43 16
7 O -0.50 -7.24 16.13 -19.25 -0.31 -7.55 16
8 O -0.35 -4.24 9.46 -40.56 -0.38 -4.63 16
9 C 0.07 0.94 5.48 37.16 0.20 1.15 16
10 C -0.10 -1.45 5.60 -26.73 -0.15 -1.60 16
11 C -0.08 -1.55 5.67 37.16 0.21 -1.34 16
12 S -0.21 -4.85 19.41 -107.50 -2.09 -6.93 16
13 C -0.51 -14.38 10.04 30.94 0.31 -14.07 16
14 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16
15 C 0.09 2.64 5.50 -17.43 -0.10 2.55 16
16 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16
17 Si 0.86 21.12 27.74 -169.99 -4.72 16.41 16
18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
20 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16
21 C -0.07 -0.51 9.61 -39.17 -0.38 -0.89 16
22 C -0.13 -0.90 10.00 -39.60 -0.40 -1.29 16
23 C 0.10 0.91 7.32 -39.15 -0.29 0.63 16
24 F -0.13 -1.22 17.10 2.25 0.04 -1.18 16
25 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16
26 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16
27 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16
28 H 0.15 1.25 5.88 -52.49 -0.31 0.94 16
29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
31 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16
32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
33 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16
34 H 0.07 1.33 8.14 -51.91 -0.42 0.90 16
35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
36 H 0.16 1.01 7.60 -52.49 -0.40 0.61 16
37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16
LS Contribution 343.36 15.07 5.17 5.17
Total: -1.00 -32.59 343.36 -6.70 -39.29
By element:
Atomic # 1 Polarization: 2.15 SS G_CDS: -4.46 Total: -2.31 kcal
Atomic # 6 Polarization: -9.26 SS G_CDS: -0.53 Total: -9.79 kcal
Atomic # 7 Polarization: -26.37 SS G_CDS: 0.78 Total: -25.60 kcal
Atomic # 8 Polarization: -14.17 SS G_CDS: -0.90 Total: -15.07 kcal
Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -4.72 Total: 16.41 kcal
Atomic # 16 Polarization: -4.85 SS G_CDS: -2.09 Total: -6.93 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -32.59 -6.70 -39.29 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805498596.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -114.656 kcal
(2) G-P(sol) polarization free energy of solvation -32.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.947 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds