Wall clock time and date at job start Tue Mar 31 2020 10:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38298 * 119.99167 * 359.71965 * 3 2 1 5 5 C 1.39661 * 119.81687 * 179.73363 * 4 3 2 6 6 C 1.47607 * 120.10615 * 180.24879 * 5 4 3 7 7 O 1.21483 * 119.99708 * 0.31829 * 6 5 4 8 8 O 1.34724 * 120.00246 * 180.30988 * 6 5 4 9 9 C 1.45194 * 117.00013 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47282 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47258 * 180.02562 * 10 9 8 12 12 S 1.81007 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.76199 * 100.00155 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99897 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99952 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46618 * 90.00411 * 17 15 13 19 19 H 1.48488 * 109.47077 * 210.00387 * 17 15 13 20 20 H 1.48498 * 109.47031 * 330.00801 * 17 15 13 21 21 C 1.39708 * 119.79419 * 0.56488 * 5 4 3 22 22 C 1.37872 * 119.97211 * 359.70674 * 21 5 4 23 23 C 1.38544 * 120.18923 * 0.02562 * 22 21 5 24 24 F 1.35098 * 119.89685 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 28 28 H 1.07996 * 120.08986 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.47700 * 300.00436 * 9 8 6 30 30 H 1.08997 * 109.47092 * 60.00605 * 9 8 6 31 31 H 1.09007 * 109.46562 * 299.99958 * 10 9 8 32 32 H 1.08997 * 109.47138 * 59.99929 * 10 9 8 33 33 H 1.09003 * 109.47483 * 299.99585 * 11 10 9 34 34 H 1.09006 * 109.47498 * 60.00004 * 11 10 9 35 35 H 0.97002 * 119.99879 * 179.97438 * 16 15 13 36 36 H 1.07990 * 120.01346 * 179.68287 * 21 5 4 37 37 H 1.08001 * 119.90539 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2929 2.3712 -0.0059 5 6 1.9307 3.6137 -0.0002 6 6 1.1328 4.8555 -0.0009 7 8 -0.0807 4.7978 -0.0005 8 8 1.7502 6.0529 -0.0017 9 6 0.9025 7.2317 -0.0017 10 6 1.7758 8.4880 -0.0034 11 6 0.8825 9.7301 -0.0028 12 16 1.9156 11.2164 -0.0040 13 6 0.6655 12.4580 -0.0023 14 1 -0.3768 12.1750 -0.0014 15 6 1.0201 13.7999 -0.0032 16 7 0.0862 14.7275 -0.0024 17 14 2.8229 14.2895 -0.0054 18 1 3.2988 14.4189 -1.4062 19 1 2.9836 15.5895 0.6940 20 1 3.6192 13.2493 0.6939 21 6 3.3263 3.6776 -0.0006 22 6 4.0690 2.5160 -0.0005 23 6 3.4353 1.2839 -0.0005 24 9 4.1689 0.1495 0.0002 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 0.2143 2.3162 -0.0100 29 1 0.2726 7.2263 -0.8913 30 1 0.2738 7.2271 0.8886 31 1 2.4059 8.4936 0.8861 32 1 2.4042 8.4925 -0.8939 33 1 0.2520 9.7248 -0.8920 34 1 0.2543 9.7255 0.8880 35 1 0.3341 15.6653 -0.0026 36 1 3.8231 4.6364 -0.0014 37 1 5.1478 2.5667 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805498596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:26 Heat of formation + Delta-G solvation = -153.946785 kcal Electronic energy + Delta-G solvation = -22038.268427 eV Core-core repulsion = 18207.727920 eV Total energy + Delta-G solvation = -3830.540507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.33146 -41.01501 -40.08073 -37.89438 -36.80018 -33.70320 -32.48425 -31.57231 -30.91022 -28.09011 -26.78435 -25.67469 -24.37937 -23.05677 -21.61509 -21.36820 -19.12041 -18.11578 -17.49512 -17.46752 -16.85234 -16.83227 -16.63980 -16.59870 -15.56353 -15.04774 -15.03562 -14.85495 -14.83384 -14.61913 -13.73736 -13.38677 -13.17849 -13.13735 -12.86391 -12.68892 -12.54235 -12.22826 -11.84742 -11.69447 -11.57969 -11.28900 -11.13936 -11.02576 -10.91413 -10.44405 -10.31315 -9.85661 -9.58413 -9.05235 -8.83048 -8.65055 -7.01532 -6.32583 -4.06281 0.02342 0.65521 2.08505 2.26256 2.57272 2.96840 3.11010 3.26890 3.41440 3.51369 3.60045 4.11726 4.25059 4.28092 4.38067 4.53165 4.66383 4.67650 4.73786 4.90253 4.97063 5.02100 5.05852 5.06403 5.21972 5.30512 5.31876 5.53573 5.61978 5.63007 5.72958 5.96159 5.97800 6.23799 6.27794 6.50187 6.64241 7.47259 7.90951 8.40194 9.12671 10.76760 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.034242 B = 0.002007 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.506006 B =13945.336405 C =14731.789179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.307 6.307 3 C 0.084 3.916 4 C -0.121 4.121 5 C -0.094 4.094 6 C 0.509 3.491 7 O -0.503 6.503 8 O -0.348 6.348 9 C 0.073 3.927 10 C -0.101 4.101 11 C -0.085 4.085 12 S -0.206 6.206 13 C -0.505 4.505 14 H 0.089 0.911 15 C 0.092 3.908 16 N -0.880 5.880 17 Si 0.862 3.138 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.237 1.237 21 C -0.066 4.066 22 C -0.128 4.128 23 C 0.104 3.896 24 F -0.125 7.125 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.154 0.846 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.271 0.729 36 H 0.155 0.845 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 -29.281 0.079 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.221 6.221 3 C 0.038 3.962 4 C -0.140 4.140 5 C -0.096 4.096 6 C 0.353 3.647 7 O -0.392 6.392 8 O -0.264 6.264 9 C -0.002 4.002 10 C -0.140 4.140 11 C -0.233 4.233 12 S 0.022 5.978 13 C -0.653 4.653 14 H 0.107 0.893 15 C -0.117 4.117 16 N -0.516 5.516 17 Si 0.687 3.313 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.161 1.161 21 C -0.084 4.084 22 C -0.147 4.147 23 C 0.084 3.916 24 F -0.104 7.104 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.171 0.829 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.173 0.827 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.165 -29.165 0.080 29.809 hybrid contribution -1.054 0.391 -0.033 1.124 sum 5.111 -28.774 0.048 29.224 Atomic orbital electron populations 1.23216 0.77288 1.04690 1.02056 1.86161 1.22210 1.24924 1.88758 1.18757 0.90714 0.85681 1.01085 1.21219 1.01395 0.89702 1.01638 1.18956 0.93464 0.90436 1.06702 1.20897 0.86357 0.84217 0.73193 1.90851 1.14861 1.88033 1.45475 1.86499 1.41830 1.14627 1.83485 1.23301 0.92817 0.80979 1.03059 1.21340 0.98162 0.89959 1.04507 1.22947 1.00550 0.95535 1.04277 1.84166 1.16211 0.99850 1.97561 1.22114 0.93261 0.91178 1.58705 0.89293 1.24798 0.98230 0.95354 0.93296 1.69934 1.32944 1.00759 1.47999 0.86668 0.85124 0.79794 0.79747 1.19313 1.20037 1.16144 1.21354 0.92035 0.99393 0.95666 1.21060 1.01752 0.89599 1.02277 1.17300 0.85974 0.83167 1.05194 1.91537 1.76491 1.48679 1.93647 0.92028 0.87533 0.92026 0.82856 0.90758 0.90750 0.90147 0.90155 0.90979 0.90935 0.91903 0.82705 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.69 10.36 -19.63 -0.20 -2.89 16 3 C 0.08 0.76 6.69 -39.24 -0.26 0.49 16 4 C -0.12 -1.08 8.58 -39.03 -0.33 -1.41 16 5 C -0.09 -0.91 5.87 -104.99 -0.62 -1.53 16 6 C 0.51 6.16 7.89 34.55 0.27 6.43 16 7 O -0.50 -7.24 16.13 -19.25 -0.31 -7.55 16 8 O -0.35 -4.24 9.46 -40.56 -0.38 -4.63 16 9 C 0.07 0.94 5.48 37.16 0.20 1.15 16 10 C -0.10 -1.45 5.60 -26.73 -0.15 -1.60 16 11 C -0.08 -1.55 5.67 37.16 0.21 -1.34 16 12 S -0.21 -4.85 19.41 -107.50 -2.09 -6.93 16 13 C -0.51 -14.38 10.04 30.94 0.31 -14.07 16 14 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16 15 C 0.09 2.64 5.50 -17.43 -0.10 2.55 16 16 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 17 Si 0.86 21.12 27.74 -169.99 -4.72 16.41 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 21 C -0.07 -0.51 9.61 -39.17 -0.38 -0.89 16 22 C -0.13 -0.90 10.00 -39.60 -0.40 -1.29 16 23 C 0.10 0.91 7.32 -39.15 -0.29 0.63 16 24 F -0.13 -1.22 17.10 2.25 0.04 -1.18 16 25 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 26 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 28 H 0.15 1.25 5.88 -52.49 -0.31 0.94 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 34 H 0.07 1.33 8.14 -51.91 -0.42 0.90 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.16 1.01 7.60 -52.49 -0.40 0.61 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -32.59 343.36 -6.70 -39.29 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.46 Total: -2.31 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.53 Total: -9.79 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.78 Total: -25.60 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.90 Total: -15.07 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.72 Total: 16.41 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -2.09 Total: -6.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.59 -6.70 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805498596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.656 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds