Wall clock time and date at job start Tue Mar 31 2020 10:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38298 * 119.99167 * 359.71965 * 3 2 1 5 5 C 1.39661 * 119.81687 * 179.73363 * 4 3 2 6 6 C 1.47607 * 120.10615 * 180.24879 * 5 4 3 7 7 O 1.21483 * 119.99708 * 0.31829 * 6 5 4 8 8 O 1.34724 * 120.00246 * 180.30988 * 6 5 4 9 9 C 1.45194 * 117.00013 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47282 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47258 * 180.02562 * 10 9 8 12 12 S 1.81007 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.76199 * 100.00155 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99897 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99952 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46618 * 90.00411 * 17 15 13 19 19 H 1.48488 * 109.47077 * 210.00387 * 17 15 13 20 20 H 1.48498 * 109.47031 * 330.00801 * 17 15 13 21 21 C 1.39708 * 119.79419 * 0.56488 * 5 4 3 22 22 C 1.37872 * 119.97211 * 359.70674 * 21 5 4 23 23 C 1.38544 * 120.18923 * 0.02562 * 22 21 5 24 24 F 1.35098 * 119.89685 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 28 28 H 1.07996 * 120.08986 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.47700 * 300.00436 * 9 8 6 30 30 H 1.08997 * 109.47092 * 60.00605 * 9 8 6 31 31 H 1.09007 * 109.46562 * 299.99958 * 10 9 8 32 32 H 1.08997 * 109.47138 * 59.99929 * 10 9 8 33 33 H 1.09003 * 109.47483 * 299.99585 * 11 10 9 34 34 H 1.09006 * 109.47498 * 60.00004 * 11 10 9 35 35 H 0.97002 * 119.99879 * 179.97438 * 16 15 13 36 36 H 1.07990 * 120.01346 * 179.68287 * 21 5 4 37 37 H 1.08001 * 119.90539 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2929 2.3712 -0.0059 5 6 1.9307 3.6137 -0.0002 6 6 1.1328 4.8555 -0.0009 7 8 -0.0807 4.7978 -0.0005 8 8 1.7502 6.0529 -0.0017 9 6 0.9025 7.2317 -0.0017 10 6 1.7758 8.4880 -0.0034 11 6 0.8825 9.7301 -0.0028 12 16 1.9156 11.2164 -0.0040 13 6 0.6655 12.4580 -0.0023 14 1 -0.3768 12.1750 -0.0014 15 6 1.0201 13.7999 -0.0032 16 7 0.0862 14.7275 -0.0024 17 14 2.8229 14.2895 -0.0054 18 1 3.2988 14.4189 -1.4062 19 1 2.9836 15.5895 0.6940 20 1 3.6192 13.2493 0.6939 21 6 3.3263 3.6776 -0.0006 22 6 4.0690 2.5160 -0.0005 23 6 3.4353 1.2839 -0.0005 24 9 4.1689 0.1495 0.0002 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 0.2143 2.3162 -0.0100 29 1 0.2726 7.2263 -0.8913 30 1 0.2738 7.2271 0.8886 31 1 2.4059 8.4936 0.8861 32 1 2.4042 8.4925 -0.8939 33 1 0.2520 9.7248 -0.8920 34 1 0.2543 9.7255 0.8880 35 1 0.3341 15.6653 -0.0026 36 1 3.8231 4.6364 -0.0014 37 1 5.1478 2.5667 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805498596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:26 Heat of formation + Delta-G solvation = -172.533944 kcal Electronic energy + Delta-G solvation = -22039.074427 eV Core-core repulsion = 18207.727920 eV Total energy + Delta-G solvation = -3831.346507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.02648 -41.84482 -40.82213 -38.55453 -37.79075 -34.94064 -34.67686 -32.26707 -31.52947 -28.70503 -28.11567 -27.59471 -25.22379 -23.65427 -22.80496 -22.23916 -19.91790 -19.53599 -18.85700 -18.23312 -17.80651 -17.62048 -17.42076 -17.27993 -17.09407 -16.17184 -16.15698 -16.02821 -15.63689 -15.37656 -14.97781 -14.75592 -14.28174 -14.19782 -13.91228 -13.88242 -13.41262 -13.36130 -13.04109 -12.72665 -12.62909 -12.42965 -12.42248 -12.26048 -12.22858 -11.85904 -11.65568 -11.53271 -11.15883 -10.59357 -10.22074 -9.47280 -8.99445 -8.51394 -6.23345 -0.69656 0.05199 1.05072 1.25036 1.33911 1.36950 1.50069 1.80560 2.04932 2.25426 2.41709 2.66724 2.86702 2.95125 3.40305 3.53116 3.76726 3.85142 3.91240 3.96035 4.10311 4.24933 4.30046 4.30459 4.35285 4.43989 4.60782 4.65782 4.68174 4.72939 4.94217 5.01069 5.03890 5.09224 5.32905 5.40207 5.69920 6.06552 6.11053 6.52768 6.92202 8.61554 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.034242 B = 0.002007 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.506006 B =13945.336405 C =14731.789179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.077 3.923 4 C -0.122 4.122 5 C -0.108 4.108 6 C 0.512 3.488 7 O -0.532 6.532 8 O -0.343 6.343 9 C 0.079 3.921 10 C -0.088 4.088 11 C -0.075 4.075 12 S -0.205 6.205 13 C -0.525 4.525 14 H 0.051 0.949 15 C 0.035 3.965 16 N -0.922 5.922 17 Si 0.927 3.073 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.225 1.225 21 C -0.058 4.058 22 C -0.115 4.115 23 C 0.092 3.908 24 F -0.132 7.132 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.066 0.934 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.277 0.723 36 H 0.172 0.828 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -30.539 0.103 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.031 3.969 4 C -0.141 4.141 5 C -0.110 4.110 6 C 0.358 3.642 7 O -0.423 6.423 8 O -0.259 6.259 9 C 0.003 3.997 10 C -0.126 4.126 11 C -0.224 4.224 12 S 0.023 5.977 13 C -0.673 4.673 14 H 0.069 0.931 15 C -0.169 4.169 16 N -0.560 5.560 17 Si 0.748 3.252 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.149 1.149 21 C -0.077 4.077 22 C -0.133 4.133 23 C 0.072 3.928 24 F -0.111 7.111 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.173 0.827 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.189 0.811 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.372 -30.439 0.105 31.569 hybrid contribution -1.846 0.642 -0.045 1.955 sum 6.527 -29.797 0.060 30.503 Atomic orbital electron populations 1.23465 0.75690 1.06260 1.02537 1.86144 1.23960 1.24964 1.88755 1.18866 0.91030 0.85799 1.01228 1.21224 1.01613 0.89559 1.01710 1.18930 0.94199 0.89392 1.08448 1.21285 0.86232 0.84535 0.72165 1.90840 1.16129 1.88278 1.47032 1.86477 1.41441 1.14517 1.83514 1.23095 0.92435 0.80832 1.03301 1.21154 0.97536 0.88558 1.05349 1.22981 1.00440 0.94683 1.04249 1.83792 1.15721 1.00607 1.97589 1.22360 0.93234 0.93251 1.58447 0.93087 1.25819 1.03069 0.95308 0.92735 1.70043 1.35452 1.01422 1.49114 0.85695 0.79269 0.80005 0.80269 1.18545 1.18931 1.14859 1.21538 0.91148 1.00390 0.94592 1.21332 1.03096 0.88397 1.00508 1.17609 0.86053 0.83588 1.05524 1.91518 1.76594 1.49229 1.93753 0.91549 0.85503 0.91538 0.82656 0.90633 0.90626 0.89319 0.89301 0.91079 0.91044 0.91409 0.81089 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.45 10.36 -93.16 -0.96 -6.41 16 3 C 0.08 1.32 6.69 22.49 0.15 1.47 16 4 C -0.12 -2.08 8.58 22.63 0.19 -1.89 16 5 C -0.11 -1.94 5.87 -20.11 -0.12 -2.05 16 6 C 0.51 11.71 7.89 70.30 0.55 12.26 16 7 O -0.53 -14.97 16.13 19.89 0.32 -14.65 16 8 O -0.34 -7.65 9.46 -56.34 -0.53 -8.18 16 9 C 0.08 1.88 5.48 71.98 0.39 2.27 16 10 C -0.09 -2.31 5.60 30.59 0.17 -2.14 16 11 C -0.08 -2.67 5.67 71.98 0.41 -2.26 16 12 S -0.21 -9.43 19.41 -56.49 -1.10 -10.53 16 13 C -0.53 -30.39 10.04 67.95 0.68 -29.71 16 14 H 0.05 3.22 8.03 -2.91 -0.02 3.20 16 15 C 0.04 2.05 5.50 84.86 0.47 2.52 16 16 N -0.92 -56.31 13.97 21.65 0.30 -56.00 16 17 Si 0.93 43.10 27.74 68.60 1.90 45.00 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.23 -9.96 6.74 99.48 0.67 -9.29 16 21 C -0.06 -0.76 9.61 22.54 0.22 -0.54 16 22 C -0.12 -1.30 10.00 22.26 0.22 -1.08 16 23 C 0.09 1.48 7.32 22.55 0.16 1.65 16 24 F -0.13 -2.41 17.10 44.97 0.77 -1.64 16 25 H 0.07 0.55 7.67 -2.39 -0.02 0.54 16 26 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.55 7.65 -2.38 -0.02 0.54 16 28 H 0.16 2.48 5.88 -2.91 -0.02 2.46 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.17 1.65 7.60 -2.92 -0.02 1.63 16 37 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -70.62 343.36 6.38 -64.24 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.05 Total: 6.42 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.62 Total: -18.25 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.30 Total: -56.00 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.18 Total: -29.24 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.77 Total: -1.64 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.90 Total: 45.00 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.10 Total: -10.53 kcal Total: -70.62 6.38 -64.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805498596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.291 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds