Wall clock time and date at job start Tue Mar 31 2020 10:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48491 * 109.46921 * 239.99825 * 3 2 1 5 5 H 1.48498 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46712 * 120.00178 * 3 2 1 7 7 C 1.38800 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99809 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99836 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46970 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47319 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47246 * 180.02562 * 12 11 10 14 14 C 1.34231 * 117.00269 * 180.02562 * 13 12 11 15 15 O 1.20832 * 119.99399 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00288 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47069 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46776 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 0.96997 * 120.00012 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47265 * 60.00666 * 10 9 7 26 26 H 1.08997 * 109.47439 * 299.99803 * 10 9 7 27 27 H 1.09010 * 109.46793 * 60.00264 * 11 10 9 28 28 H 1.09001 * 109.47574 * 300.00427 * 11 10 9 29 29 H 1.08997 * 109.46943 * 59.99997 * 12 11 10 30 30 H 1.09001 * 109.47096 * 300.00658 * 12 11 10 31 31 H 1.09005 * 109.47250 * 59.99680 * 16 14 13 32 32 H 1.09007 * 109.47222 * 299.99932 * 16 14 13 33 33 H 1.08994 * 109.46921 * 60.00192 * 17 16 14 34 34 H 1.08994 * 109.47207 * 299.99884 * 17 16 14 35 35 H 1.08994 * 109.47301 * 60.00348 * 18 17 16 36 36 H 1.09003 * 109.46866 * 299.99784 * 18 17 16 37 37 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 38 38 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7281 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9793 -5.3243 0.0001 12 6 3.1514 -6.3078 0.0008 13 8 2.6422 -7.6675 0.0008 14 6 3.5485 -8.6577 0.0018 15 8 4.7283 -8.3966 0.0023 16 6 3.0947 -10.0946 0.0025 17 6 4.3167 -11.0154 0.0030 18 6 3.8558 -12.4744 0.0030 19 6 5.0593 -13.3813 0.0042 20 6 5.6548 -13.8296 -1.1622 21 6 6.7103 -14.6257 -0.9844 22 16 7.0044 -14.8398 0.7365 23 6 5.6313 -13.8132 1.1292 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 1.3705 -5.4846 -0.8898 28 1 1.3709 -5.4841 0.8903 29 1 3.7598 -6.1472 0.8907 30 1 3.7602 -6.1480 -0.8892 31 1 2.4957 -10.2869 -0.8877 32 1 2.4948 -10.2858 0.8923 33 1 4.9159 -10.8232 0.8929 34 1 4.9161 -10.8241 -0.8870 35 1 3.2568 -12.6662 -0.8871 36 1 3.2561 -12.6659 0.8929 37 1 5.2925 -13.5554 -2.1420 38 1 7.2973 -15.0674 -1.7760 39 1 5.3040 -13.5665 2.1285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805527672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:40 Heat of formation + Delta-G solvation = -86.396357 kcal Electronic energy + Delta-G solvation = -19480.464350 eV Core-core repulsion = 16219.066226 eV Total energy + Delta-G solvation = -3261.398124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51306 -38.86194 -36.86453 -34.57606 -33.48620 -32.44872 -30.58944 -28.23525 -26.46241 -25.45843 -24.06821 -22.35892 -21.33985 -20.63407 -19.12099 -18.08945 -17.67158 -17.33025 -16.89768 -16.44490 -15.71959 -15.28609 -14.82427 -14.42229 -14.31413 -14.00606 -13.52323 -13.34314 -13.25282 -12.94946 -12.69053 -12.63231 -12.22549 -12.10036 -12.01567 -11.80382 -11.33442 -11.15279 -11.12584 -11.03234 -10.97027 -10.93650 -10.69811 -10.50357 -10.28221 -9.64280 -9.18439 -9.07457 -8.75121 -8.36898 -6.57184 -6.25183 -3.96439 0.63069 1.29389 1.61652 2.14653 2.28049 2.62004 3.21581 3.22633 3.27185 3.53935 4.19629 4.34302 4.46594 4.56080 4.66305 4.79481 4.97884 5.01646 5.10074 5.12682 5.17056 5.19126 5.21778 5.24390 5.37365 5.40115 5.49149 5.58580 5.71403 5.77179 5.90156 5.91640 6.04898 6.12151 6.16748 6.44434 6.46855 6.67405 7.58263 7.71333 8.34084 9.21039 10.82913 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.048225 B = 0.001503 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.468870 B =18628.173619 C =18930.846014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.512 6.512 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.061 4.061 19 C -0.098 4.098 20 C -0.130 4.130 21 C -0.212 4.212 22 S 0.087 5.913 23 C -0.211 4.211 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.276 -30.877 -0.139 32.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.274 6.274 14 C 0.301 3.699 15 O -0.400 6.400 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.101 4.101 19 C -0.111 4.111 20 C -0.160 4.160 21 C -0.347 4.347 22 S 0.351 5.649 23 C -0.346 4.346 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.430 -31.636 0.718 33.020 hybrid contribution 1.055 2.183 -0.833 2.564 sum 10.484 -29.453 -0.115 31.264 Atomic orbital electron populations 1.70008 1.05924 1.27526 1.47024 1.25014 0.95094 0.99103 0.94490 0.86204 0.79226 0.81105 0.78884 1.19907 1.20776 1.19914 1.22663 0.94574 0.90715 1.58846 0.90890 1.84639 1.08791 0.99204 1.96890 1.23185 1.03434 0.96398 1.03325 1.21285 0.96464 0.91582 1.04283 1.23256 0.97711 0.76769 1.02528 1.86482 1.40455 1.16988 1.83433 1.23718 0.84733 0.88998 0.72496 1.90676 1.18767 1.85179 1.45382 1.21422 1.00462 0.87276 1.06055 1.21410 0.96312 0.92056 1.04336 1.20339 0.94019 0.92310 1.03385 1.18914 0.99566 1.00610 0.91997 1.20142 0.96846 0.99504 0.99548 1.25615 1.03485 1.06613 0.99006 1.84333 1.30381 1.49232 1.00981 1.25506 1.01055 1.05493 1.02550 0.92189 0.91755 0.91745 0.90360 0.90369 0.91220 0.91222 0.87527 0.87549 0.90785 0.90721 0.90416 0.90564 0.84134 0.81896 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.20 21.44 -107.50 -2.30 -5.51 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.59 5.60 -26.73 -0.15 -1.74 16 12 C 0.07 1.05 5.47 37.16 0.20 1.25 16 13 O -0.36 -4.82 10.22 -39.26 -0.40 -5.22 16 14 C 0.46 5.57 7.96 36.00 0.29 5.85 16 15 O -0.51 -7.78 15.73 -18.76 -0.30 -8.08 16 16 C -0.11 -0.84 5.81 -27.88 -0.16 -1.01 16 17 C -0.10 -0.76 4.49 -26.73 -0.12 -0.88 16 18 C -0.06 -0.34 5.47 -27.88 -0.15 -0.49 16 19 C -0.10 -0.70 5.06 -106.25 -0.54 -1.23 16 20 C -0.13 -0.90 9.98 -41.21 -0.41 -1.31 16 21 C -0.21 -1.40 11.23 29.04 0.33 -1.07 16 22 S 0.09 0.59 23.34 -107.50 -2.51 -1.92 16 23 C -0.21 -1.48 10.98 29.04 0.32 -1.16 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 26 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 36 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -32.96 365.37 -10.16 -43.12 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.88 Total: -2.74 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 0.01 Total: -16.51 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.73 Total: -25.10 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.70 Total: -13.30 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -4.81 Total: -7.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.96 -10.16 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805527672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.278 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds