Wall clock time and date at job start Tue Mar 31 2020 10:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48491 * 109.46921 * 239.99825 * 3 2 1 5 5 H 1.48498 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46712 * 120.00178 * 3 2 1 7 7 C 1.38800 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99809 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99836 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46970 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47319 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47246 * 180.02562 * 12 11 10 14 14 C 1.34231 * 117.00269 * 180.02562 * 13 12 11 15 15 O 1.20832 * 119.99399 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00288 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47069 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46776 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 0.96997 * 120.00012 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47265 * 60.00666 * 10 9 7 26 26 H 1.08997 * 109.47439 * 299.99803 * 10 9 7 27 27 H 1.09010 * 109.46793 * 60.00264 * 11 10 9 28 28 H 1.09001 * 109.47574 * 300.00427 * 11 10 9 29 29 H 1.08997 * 109.46943 * 59.99997 * 12 11 10 30 30 H 1.09001 * 109.47096 * 300.00658 * 12 11 10 31 31 H 1.09005 * 109.47250 * 59.99680 * 16 14 13 32 32 H 1.09007 * 109.47222 * 299.99932 * 16 14 13 33 33 H 1.08994 * 109.46921 * 60.00192 * 17 16 14 34 34 H 1.08994 * 109.47207 * 299.99884 * 17 16 14 35 35 H 1.08994 * 109.47301 * 60.00348 * 18 17 16 36 36 H 1.09003 * 109.46866 * 299.99784 * 18 17 16 37 37 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 38 38 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7281 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9793 -5.3243 0.0001 12 6 3.1514 -6.3078 0.0008 13 8 2.6422 -7.6675 0.0008 14 6 3.5485 -8.6577 0.0018 15 8 4.7283 -8.3966 0.0023 16 6 3.0947 -10.0946 0.0025 17 6 4.3167 -11.0154 0.0030 18 6 3.8558 -12.4744 0.0030 19 6 5.0593 -13.3813 0.0042 20 6 5.6548 -13.8296 -1.1622 21 6 6.7103 -14.6257 -0.9844 22 16 7.0044 -14.8398 0.7365 23 6 5.6313 -13.8132 1.1292 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 1.3705 -5.4846 -0.8898 28 1 1.3709 -5.4841 0.8903 29 1 3.7598 -6.1472 0.8907 30 1 3.7602 -6.1480 -0.8892 31 1 2.4957 -10.2869 -0.8877 32 1 2.4948 -10.2858 0.8923 33 1 4.9159 -10.8232 0.8929 34 1 4.9161 -10.8241 -0.8870 35 1 3.2568 -12.6662 -0.8871 36 1 3.2561 -12.6659 0.8929 37 1 5.2925 -13.5554 -2.1420 38 1 7.2973 -15.0674 -1.7760 39 1 5.3040 -13.5665 2.1285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805527672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:39 Heat of formation + Delta-G solvation = -102.959798 kcal Electronic energy + Delta-G solvation = -19481.182595 eV Core-core repulsion = 16219.066226 eV Total energy + Delta-G solvation = -3262.116369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52372 -39.36273 -37.92577 -35.21696 -34.86398 -34.58102 -31.14620 -28.94658 -27.98843 -27.25033 -24.73185 -23.03875 -22.65388 -21.46163 -19.65852 -19.54300 -18.71974 -18.38348 -17.90089 -17.40336 -16.90097 -16.47132 -16.19795 -15.94582 -15.37126 -14.94693 -14.52358 -14.22264 -14.14018 -13.85083 -13.82920 -13.58987 -13.36010 -13.11125 -12.93864 -12.71133 -12.64172 -12.60193 -12.43031 -12.36943 -12.31220 -11.71517 -11.65857 -11.55352 -11.47451 -11.35799 -11.14508 -10.37454 -9.68500 -9.26869 -8.68706 -8.38436 -6.15253 0.13006 0.80378 1.12138 1.20189 1.28028 1.40883 1.44289 1.52897 1.78110 1.93923 2.26929 2.96027 3.28052 3.65410 3.83376 3.83879 3.99015 4.00762 4.14739 4.17470 4.30473 4.31728 4.42154 4.53802 4.58302 4.67189 4.70311 4.72669 4.77067 4.94568 5.01108 5.06321 5.13819 5.21295 5.35669 5.39009 5.52049 5.58353 5.64033 6.16923 6.73068 7.03869 8.70635 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.048225 B = 0.001503 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.468870 B =18628.173619 C =18930.846014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.074 0.926 9 S -0.183 6.183 10 C -0.093 4.093 11 C -0.085 4.085 12 C 0.080 3.920 13 O -0.359 6.359 14 C 0.455 3.545 15 O -0.547 6.547 16 C -0.106 4.106 17 C -0.097 4.097 18 C -0.054 4.054 19 C -0.109 4.109 20 C -0.143 4.143 21 C -0.218 4.218 22 S 0.073 5.927 23 C -0.223 4.223 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.180 0.820 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.559 -31.651 -0.323 33.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.692 4.692 8 H 0.092 0.908 9 S 0.046 5.954 10 C -0.242 4.242 11 C -0.124 4.124 12 C 0.004 3.996 13 O -0.276 6.276 14 C 0.300 3.700 15 O -0.437 6.437 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.093 4.093 19 C -0.121 4.121 20 C -0.173 4.173 21 C -0.353 4.353 22 S 0.337 5.663 23 C -0.358 4.358 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.171 0.829 38 H 0.197 0.803 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.705 -32.433 0.533 33.858 hybrid contribution 0.999 2.308 -0.781 2.634 sum 10.704 -30.124 -0.248 31.971 Atomic orbital electron populations 1.70135 1.07624 1.28704 1.47717 1.26047 0.96035 1.03038 0.93647 0.85074 0.77954 0.76130 0.79315 1.18987 1.19860 1.19007 1.23039 0.94860 0.92039 1.59246 0.90832 1.84599 1.13010 1.00735 1.97067 1.23081 1.00818 0.96719 1.03564 1.21104 0.97045 0.89750 1.04495 1.22974 0.96507 0.77433 1.02659 1.86484 1.40879 1.16592 1.83622 1.24726 0.84132 0.90164 0.70988 1.90668 1.20256 1.85702 1.47107 1.21589 1.00790 0.83461 1.08453 1.21322 0.96043 0.93340 1.02776 1.20327 0.93661 0.90430 1.04924 1.19172 1.00124 1.00818 0.92002 1.20411 0.97039 0.99616 1.00241 1.25903 1.03672 1.06600 0.99127 1.84349 1.30767 1.49541 1.01669 1.25757 1.01093 1.05631 1.03303 0.91867 0.91458 0.91435 0.90165 0.90189 0.91158 0.91141 0.84913 0.84989 0.92461 0.92311 0.88816 0.89074 0.82855 0.80293 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.27 13.22 21.65 0.29 -53.98 16 2 C 0.02 1.00 5.49 84.86 0.47 1.46 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.33 9.50 67.95 0.65 -30.68 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.18 -9.61 21.44 -56.49 -1.21 -10.82 16 10 C -0.09 -3.68 5.67 71.98 0.41 -3.27 16 11 C -0.09 -2.70 5.60 30.60 0.17 -2.53 16 12 C 0.08 2.22 5.47 71.98 0.39 2.61 16 13 O -0.36 -9.05 10.22 -51.42 -0.53 -9.58 16 14 C 0.45 10.32 7.96 71.23 0.57 10.89 16 15 O -0.55 -16.28 15.73 21.95 0.35 -15.93 16 16 C -0.11 -1.26 5.81 29.85 0.17 -1.09 16 17 C -0.10 -1.26 4.49 30.60 0.14 -1.12 16 18 C -0.05 -0.47 5.47 29.85 0.16 -0.31 16 19 C -0.11 -1.39 5.06 -20.92 -0.11 -1.49 16 20 C -0.14 -1.80 9.98 21.22 0.21 -1.59 16 21 C -0.22 -2.68 11.23 66.72 0.75 -1.93 16 22 S 0.07 0.96 23.34 -56.49 -1.32 -0.35 16 23 C -0.22 -2.93 10.98 66.72 0.73 -2.19 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 27 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 30 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 31 H 0.13 0.97 8.14 -2.38 -0.02 0.96 16 32 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.06 0.95 8.10 -2.39 -0.02 0.94 16 35 H 0.09 0.55 8.13 -2.39 -0.02 0.53 16 36 H 0.09 0.55 8.12 -2.39 -0.02 0.53 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -71.53 365.37 5.34 -66.19 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.02 Total: 9.97 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 4.71 Total: -31.25 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.29 Total: -53.98 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.18 Total: -25.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -2.53 Total: -11.18 kcal Total: -71.53 5.34 -66.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805527672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.766 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds