Wall clock time and date at job start Tue Mar 31 2020 10:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99733 * 2 1 4 4 H 1.48501 * 109.46698 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47646 * 300.00075 * 3 2 1 6 6 H 1.48507 * 109.47095 * 60.00548 * 3 2 1 7 7 C 1.37872 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47507 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47523 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47314 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47527 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99458 * 0.02562 * 13 12 11 15 15 O 1.34226 * 120.00511 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00083 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46957 * 179.97438 * 16 15 13 18 18 C 1.38250 * 119.98297 * 0.25541 * 17 16 15 19 19 C 1.38180 * 120.03849 * 180.29853 * 18 17 16 20 20 C 1.38490 * 120.00167 * 359.72524 * 19 18 17 21 21 F 1.35100 * 120.02139 * 180.02562 * 20 19 18 22 22 C 1.38416 * 119.96045 * 0.02562 * 20 19 18 23 23 C 1.38341 * 119.97819 * 180.02562 * 17 16 15 24 24 Cl 1.73599 * 120.00413 * 359.97438 * 23 17 16 25 25 H 0.97000 * 120.00126 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47396 * 60.00160 * 9 7 2 27 27 H 1.08996 * 109.47270 * 300.00532 * 9 7 2 28 28 H 1.09004 * 109.46752 * 60.00484 * 10 9 7 29 29 H 1.08996 * 109.47455 * 300.00621 * 10 9 7 30 30 H 1.09004 * 109.46504 * 60.00586 * 11 10 9 31 31 H 1.08996 * 109.47470 * 300.00866 * 11 10 9 32 32 H 1.09009 * 109.47059 * 60.00400 * 12 11 10 33 33 H 1.08996 * 109.47561 * 300.00812 * 12 11 10 34 34 H 1.09001 * 109.46753 * 60.00148 * 16 15 13 35 35 H 1.08994 * 109.47240 * 299.99958 * 16 15 13 36 36 H 1.07999 * 119.98219 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.99944 * 179.70122 * 19 18 17 38 38 H 1.08002 * 120.01901 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0031 13 6 1.7211 -7.4551 -0.0031 14 8 0.5128 -7.4551 -0.0022 15 8 2.3922 -8.6176 -0.0042 16 6 1.6013 -9.8353 -0.0035 17 6 2.5194 -11.0304 -0.0055 18 6 3.8899 -10.8488 -0.0022 19 6 4.7327 -11.9438 -0.0102 20 6 4.2047 -13.2241 -0.0158 21 9 5.0284 -14.2949 -0.0232 22 6 2.8325 -13.4059 -0.0139 23 6 1.9901 -12.3086 -0.0058 24 17 0.2691 -12.5355 -0.0033 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6247 -2.5570 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8922 30 1 0.8528 -5.0446 -0.8906 31 1 0.8545 -5.0450 0.8894 32 1 3.1025 -6.0926 0.8861 33 1 3.0999 -6.0919 -0.8939 34 1 0.9715 -9.8599 -0.8928 35 1 0.9736 -9.8604 0.8871 36 1 4.3021 -9.8506 0.0023 37 1 5.8033 -11.8012 -0.0125 38 1 2.4197 -14.4039 -0.0179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:27 Heat of formation + Delta-G solvation = -140.588048 kcal Electronic energy + Delta-G solvation = -21910.124607 eV Core-core repulsion = 18078.119672 eV Total energy + Delta-G solvation = -3832.004935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.45676 -40.74240 -39.67917 -37.06462 -36.78932 -35.02264 -32.77573 -32.35529 -31.54403 -29.97221 -27.09300 -25.64789 -23.84751 -22.84532 -22.04046 -20.60082 -20.06796 -18.42874 -17.79653 -16.96014 -16.92693 -16.73487 -16.18154 -16.17252 -15.58341 -15.10658 -15.06589 -14.46498 -14.32458 -14.11608 -14.03746 -13.20043 -13.12233 -12.74064 -12.37567 -12.33509 -11.89690 -11.85830 -11.73833 -11.67575 -11.47521 -11.08149 -11.04092 -10.63401 -10.59455 -10.49892 -10.43330 -9.68143 -9.56969 -9.31754 -9.13793 -9.03122 -8.33727 -5.98300 -4.00896 0.34886 0.49413 1.44487 2.19376 2.40059 2.81421 3.31550 3.38973 3.42729 3.63871 4.03931 4.13249 4.33862 4.46686 4.57623 4.72099 4.85183 4.89072 5.05086 5.17852 5.21855 5.29515 5.34687 5.37352 5.54165 5.62089 5.73769 6.01498 6.12198 6.14470 6.28735 6.43230 6.73150 6.91290 7.13391 7.69539 7.70716 7.84602 8.02406 8.44039 9.06906 9.63107 11.13013 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.001883 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.643095 B =14864.027364 C =15769.306903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.110 4.110 13 C 0.462 3.538 14 O -0.500 6.500 15 O -0.360 6.360 16 C 0.107 3.893 17 C -0.091 4.091 18 C -0.056 4.056 19 C -0.146 4.146 20 C 0.112 3.888 21 F -0.132 7.132 22 C -0.145 4.145 23 C -0.005 4.005 24 Cl -0.048 7.048 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -29.732 -0.016 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.148 4.148 13 C 0.305 3.695 14 O -0.386 6.386 15 O -0.278 6.278 16 C 0.033 3.967 17 C -0.092 4.092 18 C -0.074 4.074 19 C -0.165 4.165 20 C 0.092 3.908 21 F -0.110 7.110 22 C -0.164 4.164 23 C -0.032 4.032 24 Cl -0.019 7.019 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.325 -29.711 -0.017 30.601 hybrid contribution 0.235 0.527 -0.001 0.577 sum 7.560 -29.184 -0.018 30.148 Atomic orbital electron populations 1.69983 1.06051 1.26450 1.50948 1.25049 0.94858 0.99296 0.95436 0.86546 0.80080 0.83861 0.77552 1.19754 1.21051 1.21057 1.21303 0.93047 0.91117 1.50374 0.92632 1.19105 0.94043 0.91255 0.97388 1.21649 0.99149 0.93515 1.00430 1.21590 0.97101 0.92676 1.03319 1.21630 0.99969 0.87584 1.05611 1.24256 0.87695 0.85536 0.72020 1.90697 1.15628 1.87667 1.44607 1.86436 1.41749 1.14770 1.84832 1.21633 0.91457 0.79434 1.04137 1.19526 0.94950 0.92106 1.02601 1.20955 0.91139 0.99997 0.95327 1.21350 1.01928 0.90586 1.02626 1.17509 0.87323 0.83787 1.02146 1.91543 1.71529 1.54243 1.93722 1.20909 0.91363 0.99671 1.04471 1.20304 0.85878 0.93005 1.04002 1.98417 1.09610 1.97314 1.96553 0.93074 0.96536 0.96526 0.93182 0.93172 0.91489 0.91479 0.87733 0.87738 0.89074 0.89070 0.82612 0.83605 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.68 9.11 -34.45 -0.31 -15.00 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 10 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.11 -1.34 5.81 -27.89 -0.16 -1.50 16 13 C 0.46 5.99 7.96 36.01 0.29 6.27 16 14 O -0.50 -8.12 15.73 -18.75 -0.29 -8.42 16 15 O -0.36 -3.84 8.69 -39.25 -0.34 -4.18 16 16 C 0.11 1.03 4.82 36.01 0.17 1.21 16 17 C -0.09 -0.76 5.88 -104.58 -0.62 -1.37 16 18 C -0.06 -0.41 9.38 -39.60 -0.37 -0.78 16 19 C -0.15 -0.95 10.03 -39.51 -0.40 -1.35 16 20 C 0.11 0.82 7.30 -39.42 -0.29 0.54 16 21 F -0.13 -1.06 17.27 2.25 0.04 -1.02 16 22 C -0.14 -1.03 9.81 -39.48 -0.39 -1.42 16 23 C 0.00 -0.04 6.31 -39.51 -0.25 -0.29 16 24 Cl -0.05 -0.39 27.98 -51.86 -1.45 -1.84 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 35 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.16 0.99 6.98 -52.49 -0.37 0.63 16 37 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -31.82 350.78 -8.84 -40.66 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.98 Total: -4.66 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.82 Total: -16.05 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.39 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.64 Total: -12.60 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.45 Total: -1.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.82 -8.84 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.926 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds