Wall clock time and date at job start Tue Mar 31 2020 10:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99733 * 2 1 4 4 H 1.48501 * 109.46698 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47646 * 300.00075 * 3 2 1 6 6 H 1.48507 * 109.47095 * 60.00548 * 3 2 1 7 7 C 1.37872 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47507 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47523 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47314 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47527 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99458 * 0.02562 * 13 12 11 15 15 O 1.34226 * 120.00511 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00083 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46957 * 179.97438 * 16 15 13 18 18 C 1.38250 * 119.98297 * 0.25541 * 17 16 15 19 19 C 1.38180 * 120.03849 * 180.29853 * 18 17 16 20 20 C 1.38490 * 120.00167 * 359.72524 * 19 18 17 21 21 F 1.35100 * 120.02139 * 180.02562 * 20 19 18 22 22 C 1.38416 * 119.96045 * 0.02562 * 20 19 18 23 23 C 1.38341 * 119.97819 * 180.02562 * 17 16 15 24 24 Cl 1.73599 * 120.00413 * 359.97438 * 23 17 16 25 25 H 0.97000 * 120.00126 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47396 * 60.00160 * 9 7 2 27 27 H 1.08996 * 109.47270 * 300.00532 * 9 7 2 28 28 H 1.09004 * 109.46752 * 60.00484 * 10 9 7 29 29 H 1.08996 * 109.47455 * 300.00621 * 10 9 7 30 30 H 1.09004 * 109.46504 * 60.00586 * 11 10 9 31 31 H 1.08996 * 109.47470 * 300.00866 * 11 10 9 32 32 H 1.09009 * 109.47059 * 60.00400 * 12 11 10 33 33 H 1.08996 * 109.47561 * 300.00812 * 12 11 10 34 34 H 1.09001 * 109.46753 * 60.00148 * 16 15 13 35 35 H 1.08994 * 109.47240 * 299.99958 * 16 15 13 36 36 H 1.07999 * 119.98219 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.99944 * 179.70122 * 19 18 17 38 38 H 1.08002 * 120.01901 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0031 13 6 1.7211 -7.4551 -0.0031 14 8 0.5128 -7.4551 -0.0022 15 8 2.3922 -8.6176 -0.0042 16 6 1.6013 -9.8353 -0.0035 17 6 2.5194 -11.0304 -0.0055 18 6 3.8899 -10.8488 -0.0022 19 6 4.7327 -11.9438 -0.0102 20 6 4.2047 -13.2241 -0.0158 21 9 5.0284 -14.2949 -0.0232 22 6 2.8325 -13.4059 -0.0139 23 6 1.9901 -12.3086 -0.0058 24 17 0.2691 -12.5355 -0.0033 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6247 -2.5570 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8922 30 1 0.8528 -5.0446 -0.8906 31 1 0.8545 -5.0450 0.8894 32 1 3.1025 -6.0926 0.8861 33 1 3.0999 -6.0919 -0.8939 34 1 0.9715 -9.8599 -0.8928 35 1 0.9736 -9.8604 0.8871 36 1 4.3021 -9.8506 0.0023 37 1 5.8033 -11.8012 -0.0125 38 1 2.4197 -14.4039 -0.0179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:27 Heat of formation + Delta-G solvation = -155.797575 kcal Electronic energy + Delta-G solvation = -21910.784142 eV Core-core repulsion = 18078.119672 eV Total energy + Delta-G solvation = -3832.664470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.03902 -41.68740 -40.34032 -37.87142 -37.58844 -36.60650 -34.65000 -33.11525 -32.08948 -31.58442 -28.20372 -27.04781 -24.71795 -24.11933 -22.78872 -21.96417 -21.41298 -19.01411 -18.74626 -18.37870 -17.87659 -17.77393 -17.37369 -16.77168 -16.51908 -16.27362 -16.21555 -15.74076 -15.16822 -14.95707 -14.66574 -14.52201 -14.15267 -14.03893 -13.63910 -13.52943 -13.36067 -13.00918 -12.85026 -12.50930 -12.35516 -12.31765 -12.16787 -12.15875 -12.10385 -11.96980 -11.63190 -11.35680 -11.27157 -11.02854 -10.53871 -10.12005 -9.74036 -8.17531 -6.28928 -0.22930 -0.05529 0.84917 1.17874 1.42043 1.42404 1.49208 1.55986 2.25368 2.43136 3.06246 3.15679 3.36750 3.54724 3.77676 3.86397 3.99558 4.03705 4.09703 4.14990 4.18413 4.42413 4.57243 4.68082 4.73117 4.81793 4.82702 4.88603 4.97423 5.11022 5.17909 5.30039 5.35432 5.44012 5.58840 5.59401 5.80655 5.90728 6.27298 6.70388 6.90250 7.40700 8.94720 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.001883 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.643095 B =14864.027364 C =15769.306903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.102 4.102 12 C -0.101 4.101 13 C 0.468 3.532 14 O -0.540 6.540 15 O -0.346 6.346 16 C 0.107 3.893 17 C -0.099 4.099 18 C -0.058 4.058 19 C -0.138 4.138 20 C 0.104 3.896 21 F -0.136 7.136 22 C -0.144 4.144 23 C -0.012 4.012 24 Cl -0.054 7.054 25 H 0.262 0.738 26 H -0.014 1.014 27 H -0.014 1.014 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 -30.154 -0.018 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.792 3.208 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.138 4.138 13 C 0.313 3.687 14 O -0.430 6.430 15 O -0.263 6.263 16 C 0.033 3.967 17 C -0.100 4.100 18 C -0.075 4.075 19 C -0.157 4.157 20 C 0.085 3.915 21 F -0.114 7.114 22 C -0.164 4.164 23 C -0.039 4.039 24 Cl -0.025 7.025 25 H 0.071 0.929 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.164 -30.160 -0.018 31.826 hybrid contribution -0.655 0.587 -0.001 0.879 sum 9.509 -29.573 -0.019 31.064 Atomic orbital electron populations 1.70133 1.07996 1.27614 1.52081 1.26077 0.95783 1.03691 0.94955 0.85357 0.79271 0.78581 0.77572 1.18048 1.20621 1.20631 1.21794 0.93800 0.92214 1.49857 0.91502 1.19074 0.94746 0.93724 0.94490 1.21436 0.97850 0.92321 1.01739 1.21366 0.97533 0.93328 1.01775 1.21512 0.98769 0.85097 1.08376 1.24365 0.87087 0.86365 0.70903 1.90698 1.17397 1.88222 1.46647 1.86411 1.41210 1.14503 1.84199 1.21674 0.91777 0.79410 1.03816 1.19487 0.95345 0.91528 1.03676 1.21095 0.90582 1.00788 0.95081 1.21577 1.03051 0.89856 1.01180 1.17651 0.87351 0.84073 1.02431 1.91536 1.71603 1.54514 1.93795 1.21046 0.91399 1.00064 1.03841 1.20338 0.85708 0.93176 1.04653 1.98415 1.10144 1.97326 1.96627 0.92926 0.99547 0.99535 0.91746 0.91737 0.93184 0.93168 0.84885 0.84898 0.89542 0.89532 0.81526 0.81346 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 0.89 4.97 29.85 0.15 1.03 16 10 C -0.10 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.10 -3.32 4.50 30.59 0.14 -3.18 16 12 C -0.10 -2.17 5.81 29.85 0.17 -2.00 16 13 C 0.47 11.49 7.96 71.24 0.57 12.06 16 14 O -0.54 -17.64 15.73 21.97 0.35 -17.29 16 15 O -0.35 -6.75 8.69 -51.38 -0.45 -7.19 16 16 C 0.11 1.98 4.82 71.24 0.34 2.33 16 17 C -0.10 -1.53 5.88 -19.84 -0.12 -1.65 16 18 C -0.06 -0.70 9.38 22.26 0.21 -0.49 16 19 C -0.14 -1.46 10.03 22.32 0.22 -1.23 16 20 C 0.10 1.35 7.30 22.37 0.16 1.51 16 21 F -0.14 -1.95 17.27 44.97 0.78 -1.17 16 22 C -0.14 -1.87 9.81 22.34 0.22 -1.65 16 23 C -0.01 -0.18 6.31 22.32 0.14 -0.04 16 24 Cl -0.05 -0.86 27.98 -2.72 -0.08 -0.93 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H -0.01 -0.81 8.14 -2.38 -0.02 -0.82 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 35 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 36 H 0.17 1.64 6.98 -2.91 -0.02 1.62 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -70.03 350.78 7.04 -62.99 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.07 Total: 2.25 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.06 Total: -27.01 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.10 Total: -24.49 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.93 kcal Total: -70.03 7.04 -62.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.803 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds