Wall clock time and date at job start Tue Mar 31 2020 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38542 * 120.01309 * 359.72360 * 3 2 1 5 5 C 1.39625 * 119.78671 * 179.77491 * 4 3 2 6 6 C 1.47611 * 120.08889 * 180.22926 * 5 4 3 7 7 O 1.21490 * 120.00470 * 0.27425 * 6 5 4 8 8 O 1.34735 * 119.99786 * 180.26897 * 6 5 4 9 9 C 1.45200 * 117.00082 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47349 * 180.02562 * 9 8 6 11 11 O 1.42897 * 109.46882 * 64.99728 * 10 9 8 12 12 C 1.42904 * 113.99850 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47288 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99963 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00364 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47151 * 89.99775 * 17 15 13 19 19 H 1.48504 * 109.47359 * 209.99966 * 17 15 13 20 20 H 1.48506 * 109.46988 * 330.00112 * 17 15 13 21 21 C 1.39714 * 119.81475 * 0.49845 * 5 4 3 22 22 C 1.37922 * 120.02345 * 359.75454 * 21 5 4 23 23 C 1.38465 * 120.21053 * 359.97438 * 22 21 5 24 24 F 1.35101 * 119.90467 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 27 27 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 28 28 H 1.07998 * 120.10513 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.46738 * 300.00433 * 9 8 6 30 30 H 1.09001 * 109.47047 * 60.00493 * 9 8 6 31 31 H 1.08995 * 109.47328 * 185.00008 * 10 9 8 32 32 H 1.09002 * 109.46444 * 305.00266 * 10 9 8 33 33 H 1.09007 * 109.46662 * 299.99894 * 12 11 10 34 34 H 1.08998 * 109.47479 * 59.99672 * 12 11 10 35 35 H 0.96995 * 120.00546 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.98786 * 179.72536 * 21 5 4 37 37 H 1.08002 * 119.89245 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1974 2.6620 -0.0058 5 6 1.5168 4.0212 -0.0010 6 6 0.4427 5.0338 -0.0020 7 8 -0.7211 4.6850 -0.0020 8 8 0.7530 6.3449 -0.0029 9 6 -0.3541 7.2843 -0.0032 10 6 0.1903 8.7142 -0.0049 11 8 0.8914 8.9556 -1.2264 12 6 1.4433 10.2697 -1.3300 13 6 2.1555 10.4128 -2.6503 14 1 2.1842 9.5832 -3.3411 15 6 2.7704 11.6030 -2.9764 16 7 2.7350 12.6135 -2.1354 17 14 3.6538 11.7802 -4.6127 18 1 2.7018 12.2779 -5.6379 19 1 4.7744 12.7440 -4.4685 20 1 4.1877 10.4596 -5.0326 21 6 2.8557 4.4201 -0.0010 22 6 3.8581 3.4727 -0.0005 23 6 3.5425 2.1245 0.0004 24 9 4.5293 1.2017 0.0003 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.1639 2.3483 -0.0107 29 1 -0.9637 7.1270 -0.8930 30 1 -0.9634 7.1282 0.8870 31 1 -0.6371 9.4181 0.0844 32 1 0.8709 8.8447 0.8365 33 1 0.6420 11.0061 -1.2680 34 1 2.1498 10.4322 -0.5161 35 1 3.1673 13.4509 -2.3649 36 1 3.1060 5.4707 -0.0017 37 1 4.8924 3.7835 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815224957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:50 Heat of formation + Delta-G solvation = -153.234529 kcal Electronic energy + Delta-G solvation = -22565.879977 eV Core-core repulsion = 18735.370355 eV Total energy + Delta-G solvation = -3830.509621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.32811 -40.63445 -38.86017 -37.08550 -36.09320 -32.81950 -32.03172 -31.51582 -29.96824 -29.31567 -26.99189 -24.65824 -23.66972 -22.52310 -22.17383 -21.16928 -18.81042 -17.95068 -17.38263 -16.71872 -16.60047 -16.35251 -16.11007 -16.06598 -15.37672 -14.80445 -14.71700 -14.58832 -14.35263 -14.14288 -13.87840 -13.66635 -13.28541 -13.22879 -13.00737 -12.66532 -12.54676 -12.01167 -11.61851 -11.47549 -11.01344 -10.91055 -10.86067 -10.80326 -10.54002 -10.46176 -10.32645 -10.08766 -9.34621 -9.17055 -8.92318 -8.25872 -7.85843 -6.15385 -4.17305 0.18727 0.64897 0.98766 1.86336 2.21322 2.60188 3.23902 3.27972 3.33235 3.38459 3.67931 4.26869 4.28717 4.42186 4.60755 4.65057 4.67312 4.69136 4.74194 5.09730 5.15108 5.21344 5.24925 5.35859 5.39443 5.39616 5.72022 5.79178 5.80973 5.89799 6.01383 6.24794 6.42224 7.00594 7.35186 7.66573 7.74531 8.08373 8.47355 8.95167 9.47735 10.96100 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002644 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.463384 B =10588.977403 C =11663.560978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.090 6.090 3 C -0.142 4.142 4 C -0.045 4.045 5 C -0.113 4.113 6 C 0.510 3.490 7 O -0.512 6.512 8 O -0.333 6.333 9 C 0.076 3.924 10 C 0.061 3.939 11 O -0.391 6.391 12 C 0.194 3.806 13 C -0.516 4.516 14 H 0.067 0.933 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.031 4.031 22 C -0.146 4.146 23 C 0.149 3.851 24 F -0.123 7.123 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.264 0.736 36 H 0.160 0.840 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -22.752 7.862 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.152 5.848 3 C -0.255 4.255 4 C -0.068 4.068 5 C -0.116 4.116 6 C 0.355 3.645 7 O -0.402 6.402 8 O -0.249 6.249 9 C 0.002 3.998 10 C -0.017 4.017 11 O -0.311 6.311 12 C 0.120 3.880 13 C -0.554 4.554 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.052 4.052 22 C -0.166 4.166 23 C 0.123 3.877 24 F -0.101 7.101 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.177 0.823 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.351 -23.861 7.734 25.194 hybrid contribution -0.395 1.503 -0.589 1.662 sum -2.746 -22.358 7.145 23.632 Atomic orbital electron populations 1.23790 0.94288 1.07565 1.06333 1.85672 1.06700 1.00044 1.92418 1.21688 0.94598 0.98938 1.10277 1.21119 0.99153 0.90658 0.95910 1.19082 0.92731 0.91538 1.08296 1.20919 0.87914 0.82787 0.72881 1.90816 1.20896 1.82161 1.46377 1.86633 1.39960 1.15351 1.82953 1.23288 0.87041 0.86689 1.02772 1.22330 0.96883 0.91876 0.90573 1.87919 1.71957 1.36443 1.34765 1.20244 0.92481 0.77677 0.97560 1.21039 1.33588 0.98768 1.01980 0.91500 1.24947 0.96343 0.95327 0.97851 1.69954 1.44421 1.03445 1.35944 0.86332 0.79099 0.78109 0.82941 1.20454 1.21042 1.19567 1.21565 0.90366 1.01446 0.91784 1.21152 1.01837 0.89959 1.03615 1.17384 0.83200 0.86680 1.00404 1.91550 1.60108 1.65288 1.93134 0.86892 0.89227 0.89284 0.83391 0.90259 0.90198 0.91770 0.93085 0.97604 0.97453 0.92596 0.82272 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.15 101.05 0.92 0.01 16 2 S -0.09 -0.82 22.16 -107.50 -2.38 -3.21 16 3 C -0.14 -1.50 6.11 -39.07 -0.24 -1.74 16 4 C -0.04 -0.48 8.91 -38.95 -0.35 -0.83 16 5 C -0.11 -1.38 5.87 -105.00 -0.62 -2.00 16 6 C 0.51 7.40 7.89 34.56 0.27 7.67 16 7 O -0.51 -8.12 16.13 -19.26 -0.31 -8.43 16 8 O -0.33 -5.24 9.43 -43.37 -0.41 -5.65 16 9 C 0.08 1.13 5.85 37.16 0.22 1.35 16 10 C 0.06 1.06 6.33 37.16 0.24 1.29 16 11 O -0.39 -9.14 10.30 -38.80 -0.40 -9.54 16 12 C 0.19 5.19 5.69 36.01 0.20 5.39 16 13 C -0.52 -14.93 9.43 -34.44 -0.32 -15.26 16 14 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 17 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.03 -0.34 9.61 -39.15 -0.38 -0.71 16 22 C -0.15 -1.41 10.00 -39.61 -0.40 -1.81 16 23 C 0.15 1.59 7.28 -39.10 -0.28 1.31 16 24 F -0.12 -1.36 16.74 2.25 0.04 -1.32 16 25 H 0.11 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.09 0.53 7.73 -51.92 -0.40 0.13 16 27 H 0.09 0.50 7.76 -51.92 -0.40 0.10 16 28 H 0.15 1.46 5.46 -52.49 -0.29 1.18 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.16 1.70 7.60 -52.49 -0.40 1.30 16 37 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -32.54 346.20 -7.77 -40.32 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.42 Total: -4.39 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.83 Total: -3.82 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.70 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.12 Total: -23.62 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.38 Total: -3.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.54 -7.77 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815224957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.917 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds