Wall clock time and date at job start Tue Mar 31 2020 10:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38542 * 120.01309 * 359.72360 * 3 2 1 5 5 C 1.39625 * 119.78671 * 179.77491 * 4 3 2 6 6 C 1.47611 * 120.08889 * 180.22926 * 5 4 3 7 7 O 1.21490 * 120.00470 * 0.27425 * 6 5 4 8 8 O 1.34735 * 119.99786 * 180.26897 * 6 5 4 9 9 C 1.45200 * 117.00082 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47349 * 180.02562 * 9 8 6 11 11 O 1.42897 * 109.46882 * 64.99728 * 10 9 8 12 12 C 1.42904 * 113.99850 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47288 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99963 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00364 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47151 * 89.99775 * 17 15 13 19 19 H 1.48504 * 109.47359 * 209.99966 * 17 15 13 20 20 H 1.48506 * 109.46988 * 330.00112 * 17 15 13 21 21 C 1.39714 * 119.81475 * 0.49845 * 5 4 3 22 22 C 1.37922 * 120.02345 * 359.75454 * 21 5 4 23 23 C 1.38465 * 120.21053 * 359.97438 * 22 21 5 24 24 F 1.35101 * 119.90467 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 27 27 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 28 28 H 1.07998 * 120.10513 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.46738 * 300.00433 * 9 8 6 30 30 H 1.09001 * 109.47047 * 60.00493 * 9 8 6 31 31 H 1.08995 * 109.47328 * 185.00008 * 10 9 8 32 32 H 1.09002 * 109.46444 * 305.00266 * 10 9 8 33 33 H 1.09007 * 109.46662 * 299.99894 * 12 11 10 34 34 H 1.08998 * 109.47479 * 59.99672 * 12 11 10 35 35 H 0.96995 * 120.00546 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.98786 * 179.72536 * 21 5 4 37 37 H 1.08002 * 119.89245 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1974 2.6620 -0.0058 5 6 1.5168 4.0212 -0.0010 6 6 0.4427 5.0338 -0.0020 7 8 -0.7211 4.6850 -0.0020 8 8 0.7530 6.3449 -0.0029 9 6 -0.3541 7.2843 -0.0032 10 6 0.1903 8.7142 -0.0049 11 8 0.8914 8.9556 -1.2264 12 6 1.4433 10.2697 -1.3300 13 6 2.1555 10.4128 -2.6503 14 1 2.1842 9.5832 -3.3411 15 6 2.7704 11.6030 -2.9764 16 7 2.7350 12.6135 -2.1354 17 14 3.6538 11.7802 -4.6127 18 1 2.7018 12.2779 -5.6379 19 1 4.7744 12.7440 -4.4685 20 1 4.1877 10.4596 -5.0326 21 6 2.8557 4.4201 -0.0010 22 6 3.8581 3.4727 -0.0005 23 6 3.5425 2.1245 0.0004 24 9 4.5293 1.2017 0.0003 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.1639 2.3483 -0.0107 29 1 -0.9637 7.1270 -0.8930 30 1 -0.9634 7.1282 0.8870 31 1 -0.6371 9.4181 0.0844 32 1 0.8709 8.8447 0.8365 33 1 0.6420 11.0061 -1.2680 34 1 2.1498 10.4322 -0.5161 35 1 3.1673 13.4509 -2.3649 36 1 3.1060 5.4707 -0.0017 37 1 4.8924 3.7835 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815224957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:49 Heat of formation + Delta-G solvation = -171.225965 kcal Electronic energy + Delta-G solvation = -22566.660144 eV Core-core repulsion = 18735.370355 eV Total energy + Delta-G solvation = -3831.289788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.17560 -41.73662 -39.80139 -38.68237 -37.45410 -34.94096 -32.86737 -32.49018 -31.35409 -29.84261 -29.01310 -25.69933 -24.56986 -24.47430 -23.49659 -22.23068 -19.75490 -18.92049 -18.68345 -18.25794 -17.93999 -17.59526 -17.10790 -16.98786 -16.86775 -16.36888 -16.25201 -15.52509 -15.41423 -15.12754 -14.71925 -14.56941 -14.52965 -14.37671 -14.01389 -13.73705 -13.52317 -13.47789 -13.21808 -12.91422 -12.70378 -12.49663 -12.36268 -12.04154 -11.81711 -11.76921 -11.40624 -11.27349 -11.12447 -10.88922 -10.26097 -10.20211 -8.59353 -8.31741 -6.43552 -0.72556 -0.16504 0.29287 1.18600 1.21014 1.41439 1.43407 1.54233 1.55592 2.32763 2.34958 2.85503 3.02493 3.06521 3.39173 3.47990 3.84886 3.87704 3.92444 4.11507 4.19318 4.20256 4.24857 4.41823 4.50415 4.54109 4.57960 4.69374 4.81583 4.87000 4.89815 4.98862 5.18764 5.26316 5.43226 5.55251 5.96098 6.49102 6.54732 6.80606 7.28113 8.80307 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002644 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.463384 B =10588.977403 C =11663.560978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.110 6.110 3 C -0.144 4.144 4 C -0.043 4.043 5 C -0.128 4.128 6 C 0.512 3.488 7 O -0.529 6.529 8 O -0.348 6.348 9 C 0.079 3.921 10 C 0.053 3.947 11 O -0.408 6.408 12 C 0.208 3.792 13 C -0.549 4.549 14 H 0.060 0.940 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.980 3.020 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.265 1.265 21 C -0.034 4.034 22 C -0.137 4.137 23 C 0.141 3.859 24 F -0.125 7.125 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.059 0.941 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.271 0.729 36 H 0.159 0.841 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 -23.666 7.450 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.132 5.868 3 C -0.257 4.257 4 C -0.067 4.067 5 C -0.131 4.131 6 C 0.358 3.642 7 O -0.421 6.421 8 O -0.264 6.264 9 C 0.006 3.994 10 C -0.024 4.024 11 O -0.329 6.329 12 C 0.133 3.867 13 C -0.586 4.586 14 H 0.078 0.922 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.803 3.197 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.189 1.189 21 C -0.055 4.055 22 C -0.156 4.156 23 C 0.115 3.885 24 F -0.103 7.103 25 H 0.153 0.847 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.174 0.826 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.080 0.920 36 H 0.177 0.823 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.178 -24.795 7.339 25.950 hybrid contribution -0.508 1.698 -0.380 1.812 sum -2.687 -23.098 6.959 24.273 Atomic orbital electron populations 1.23903 0.91488 1.09140 1.06768 1.85744 1.09839 0.99044 1.92153 1.21826 0.94554 0.99707 1.09661 1.21173 0.99697 0.90115 0.95688 1.19073 0.92594 0.91491 1.09907 1.21246 0.88279 0.82508 0.72137 1.90796 1.21658 1.82215 1.47424 1.86621 1.40406 1.16119 1.83214 1.23279 0.86862 0.85185 1.04107 1.22658 0.97211 0.94033 0.88476 1.87862 1.72580 1.34486 1.37936 1.19865 0.91553 0.78947 0.96296 1.21380 1.34977 0.99236 1.03035 0.92161 1.25908 0.96687 0.94638 1.01816 1.70051 1.44862 1.04012 1.37900 0.85228 0.78050 0.78438 0.77988 1.19433 1.19907 1.18900 1.21588 0.90182 1.01710 0.91983 1.21342 1.02700 0.89309 1.02296 1.17568 0.83320 0.87011 1.00557 1.91542 1.60191 1.65443 1.93162 0.84719 0.88933 0.88675 0.82584 0.90765 0.86974 0.89907 0.92278 0.99079 0.99084 0.92021 0.82332 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.15 113.37 1.04 -0.45 16 2 S -0.11 -1.88 22.16 -56.49 -1.25 -3.13 16 3 C -0.14 -2.92 6.11 22.60 0.14 -2.78 16 4 C -0.04 -0.90 8.91 22.68 0.20 -0.69 16 5 C -0.13 -3.05 5.87 -20.11 -0.12 -3.17 16 6 C 0.51 14.62 7.89 70.30 0.55 15.17 16 7 O -0.53 -16.42 16.13 19.87 0.32 -16.10 16 8 O -0.35 -10.79 9.43 -53.79 -0.51 -11.30 16 9 C 0.08 2.29 5.85 71.98 0.42 2.71 16 10 C 0.05 1.81 6.33 71.98 0.46 2.27 16 11 O -0.41 -19.33 10.30 -145.57 -1.50 -20.83 16 12 C 0.21 11.35 5.69 71.24 0.41 11.76 16 13 C -0.55 -32.16 9.43 25.60 0.24 -31.92 16 14 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 17 Si 0.98 43.73 29.54 68.60 2.03 45.75 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 C -0.03 -0.72 9.61 22.55 0.22 -0.50 16 22 C -0.14 -2.49 10.00 22.25 0.22 -2.27 16 23 C 0.14 2.87 7.28 22.58 0.16 3.04 16 24 F -0.13 -2.65 16.74 44.97 0.75 -1.90 16 25 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 0.94 7.73 -2.39 -0.02 0.92 16 27 H 0.09 0.90 7.76 -2.39 -0.02 0.88 16 28 H 0.16 2.92 5.46 -2.91 -0.02 2.91 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.16 3.36 7.60 -2.91 -0.02 3.33 16 37 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -69.32 346.20 5.62 -63.70 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 1.09 Total: 4.22 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 4.40 Total: -5.91 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.28 Total: -54.51 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -1.69 Total: -48.23 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.75 Total: -1.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -1.25 Total: -3.13 kcal Total: -69.32 5.62 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815224957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.530 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds