Wall clock time and date at job start Tue Mar 31 2020 10:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00493 * 2 1 4 4 C 1.50699 * 109.47225 * 122.46949 * 3 2 1 5 5 C 1.38224 * 120.01505 * 265.68841 * 4 3 2 6 6 C 1.38214 * 120.09680 * 180.25398 * 5 4 3 7 7 C 1.38302 * 120.12491 * 359.75002 * 6 5 4 8 8 C 1.38289 * 120.02841 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.04728 * 180.02562 * 8 7 6 10 10 C 1.38616 * 120.01312 * 85.41605 * 4 3 2 11 11 O 1.35951 * 120.06615 * 0.02562 * 10 4 3 12 12 S 1.52204 * 113.99967 * 91.39489 * 11 10 4 13 13 O 1.42101 * 104.27450 * 319.60780 * 12 11 10 14 14 O 1.42100 * 104.27566 * 191.75132 * 12 11 10 15 15 C 1.81394 * 104.44984 * 75.67809 * 12 11 10 16 16 C 1.52998 * 109.47111 * 174.17443 * 15 12 11 17 17 C 1.50696 * 109.47440 * 184.86475 * 16 15 12 18 18 H 1.08004 * 119.99801 * 4.96001 * 17 16 15 19 19 C 1.37875 * 120.00285 * 184.95595 * 17 16 15 20 20 N 1.31516 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00130 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 59.99707 * 21 19 17 23 23 H 1.48503 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47081 * 300.00305 * 21 19 17 25 25 H 1.08004 * 119.99425 * 5.04299 * 1 2 3 26 26 H 1.07997 * 120.00075 * 185.03128 * 1 2 3 27 27 H 1.08010 * 119.99364 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46803 * 2.46628 * 3 2 1 29 29 H 1.09002 * 109.47135 * 242.47060 * 3 2 1 30 30 H 1.08006 * 119.95068 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.93913 * 179.76533 * 6 5 4 32 32 H 1.07994 * 119.98243 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47548 * 294.17956 * 15 12 11 34 34 H 1.09005 * 109.47222 * 54.17701 * 15 12 11 35 35 H 1.08998 * 109.47550 * 304.87091 * 16 15 12 36 36 H 1.09003 * 109.47080 * 64.86557 * 16 15 12 37 37 H 0.97001 * 119.99846 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9753 1.3586 1.1987 5 6 2.5502 1.9683 2.3641 6 6 3.3870 2.0230 3.4628 7 6 4.6503 1.4636 3.4017 8 6 5.0789 0.8474 2.2402 9 9 6.3127 0.3003 2.1802 10 6 4.2386 0.7916 1.1349 11 8 4.6569 0.1871 -0.0088 12 16 5.3967 1.1131 -0.9636 13 8 4.6684 2.3318 -0.9045 14 8 5.4865 0.3711 -2.1722 15 6 7.0377 1.3154 -0.2174 16 6 7.9333 2.1166 -1.1644 17 6 9.3290 2.1828 -0.6001 18 1 9.5749 1.6353 0.2979 19 6 10.2921 2.9420 -1.2301 20 7 9.9926 3.6089 -2.3233 21 14 12.0225 3.0234 -0.5309 22 1 12.6072 1.6587 -0.4965 23 1 12.8614 3.9005 -1.3866 24 1 11.9743 3.5760 0.8465 25 1 -0.5399 0.9318 -0.0822 26 1 -0.5400 -0.9317 0.0820 27 1 1.8499 -0.9355 0.0004 28 1 1.3562 2.1330 0.0442 29 1 2.6566 1.3821 -0.9113 30 1 1.5643 2.4065 2.4147 31 1 3.0536 2.5033 4.3708 32 1 5.3024 1.5081 4.2614 33 1 6.9432 1.8466 0.7298 34 1 7.4802 0.3349 -0.0414 35 1 7.9583 1.6302 -2.1394 36 1 7.5368 3.1262 -1.2722 37 1 10.6702 4.1433 -2.7663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819886277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:42 Heat of formation + Delta-G solvation = -109.799056 kcal Electronic energy + Delta-G solvation = -24594.631475 eV Core-core repulsion = 20766.005357 eV Total energy + Delta-G solvation = -3828.626118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.20544 -41.10154 -38.33213 -36.79057 -35.75500 -35.31445 -33.92499 -31.41888 -31.21313 -30.37633 -26.92134 -25.69078 -23.67974 -22.47336 -21.85612 -20.43219 -19.95450 -18.37456 -17.79732 -17.40869 -17.19676 -16.55791 -15.87312 -15.63255 -15.49182 -15.21898 -14.79292 -14.58030 -14.20486 -13.96645 -13.74417 -13.41488 -12.95252 -12.74760 -12.48512 -12.43015 -12.14166 -12.07335 -11.76924 -11.69650 -11.63576 -11.40045 -11.27350 -11.06471 -10.97605 -10.45808 -10.38991 -9.74120 -9.53921 -9.28938 -9.05110 -9.00552 -8.49836 -6.12131 -4.17451 0.22991 0.77879 0.98928 2.08028 2.36620 3.12951 3.28171 3.32557 3.34893 3.70890 4.00102 4.25641 4.34046 4.37543 4.43463 4.71224 4.84263 4.86314 4.88177 5.01889 5.22744 5.29547 5.44138 5.55003 5.61476 5.66122 5.71558 5.78880 5.86303 5.92018 6.05085 6.41011 6.45503 6.51424 6.58821 7.27698 7.33184 7.81139 8.17359 8.85491 9.47037 10.98968 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.004365 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.293515 B = 6413.295986 C = 7235.899180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C -0.064 4.064 4 C -0.022 4.022 5 C -0.112 4.112 6 C -0.075 4.075 7 C -0.142 4.142 8 C 0.096 3.904 9 F -0.118 7.118 10 C 0.047 3.953 11 O -0.665 6.665 12 S 2.562 3.438 13 O -0.958 6.958 14 O -0.931 6.931 15 C -0.606 4.606 16 C 0.031 3.969 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.901 3.099 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.761 -4.347 12.301 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C -0.101 4.101 4 C -0.024 4.024 5 C -0.130 4.130 6 C -0.094 4.094 7 C -0.161 4.161 8 C 0.075 3.925 9 F -0.096 7.096 10 C 0.004 3.996 11 O -0.623 6.623 12 S 2.663 3.337 13 O -0.956 6.956 14 O -0.929 6.929 15 C -0.737 4.737 16 C -0.007 4.007 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.201 1.201 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.256 -4.424 11.611 22.083 hybrid contribution 1.976 -0.134 0.459 2.033 sum -16.280 -4.559 12.070 20.773 Atomic orbital electron populations 1.23847 0.95533 1.02102 1.01291 1.22893 0.95978 0.97970 0.99611 1.19876 0.97602 0.96779 0.95847 1.19756 0.91779 0.94168 0.96703 1.21051 1.00885 0.99663 0.91426 1.21181 0.92427 0.96776 0.99004 1.21133 0.98179 0.99972 0.96824 1.17887 0.81228 0.98725 0.94663 1.91619 1.38342 1.83042 1.96626 1.17844 0.95355 1.02721 0.83692 1.85782 1.78197 1.60027 1.38280 1.06533 0.78232 0.73579 0.75382 1.93581 1.68714 1.47379 1.85975 1.93596 1.87096 1.70695 1.41537 1.30759 1.19083 1.11154 1.12736 1.18962 0.94484 0.94545 0.92733 1.20965 0.93730 1.29883 1.11335 0.91972 1.25061 0.99309 0.95136 0.94908 1.69945 1.34618 1.30157 1.18192 0.86514 0.83560 0.78173 0.78946 1.20011 1.21049 1.20071 0.88330 0.88204 0.86778 0.88879 0.89141 0.83914 0.83796 0.83136 0.86081 0.85361 0.94943 0.94409 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 14.31 29.01 0.42 -1.25 16 2 C -0.15 -1.61 9.50 -36.03 -0.34 -1.96 16 3 C -0.06 -0.80 5.28 -29.04 -0.15 -0.95 16 4 C -0.02 -0.28 4.55 -104.49 -0.48 -0.76 16 5 C -0.11 -1.05 9.68 -39.60 -0.38 -1.44 16 6 C -0.08 -0.62 10.04 -39.57 -0.40 -1.02 16 7 C -0.14 -1.45 10.02 -39.54 -0.40 -1.85 16 8 C 0.10 1.34 6.42 -39.30 -0.25 1.08 16 9 F -0.12 -1.80 14.40 2.25 0.03 -1.77 16 10 C 0.05 0.71 4.76 -39.18 -0.19 0.53 16 11 O -0.66 -11.44 9.22 -51.91 -0.48 -11.92 16 12 S 2.56 50.93 4.81 -107.50 -0.52 50.41 16 13 O -0.96 -19.45 14.64 -67.04 -0.98 -20.44 16 14 O -0.93 -21.15 18.09 -67.04 -1.21 -22.36 16 15 C -0.61 -12.71 4.36 37.16 0.16 -12.55 16 16 C 0.03 0.83 4.98 -27.89 -0.14 0.69 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.67 7.75 -52.48 -0.41 1.26 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.10 0.72 7.85 -52.48 -0.41 0.31 16 26 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 27 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 29 H 0.09 1.35 5.72 -51.93 -0.30 1.06 16 30 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.12 2.34 6.42 -51.92 -0.33 2.01 16 34 H 0.13 2.51 7.95 -51.92 -0.41 2.10 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -34.29 332.06 -9.35 -43.64 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.36 Total: -0.20 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -2.56 Total: -32.89 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -2.67 Total: -54.71 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 50.93 SS G_CDS: -0.52 Total: 50.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.29 -9.35 -43.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819886277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.159 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds