Wall clock time and date at job start Tue Mar 31 2020 10:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00493 * 2 1 4 4 C 1.50699 * 109.47225 * 122.46949 * 3 2 1 5 5 C 1.38224 * 120.01505 * 265.68841 * 4 3 2 6 6 C 1.38214 * 120.09680 * 180.25398 * 5 4 3 7 7 C 1.38302 * 120.12491 * 359.75002 * 6 5 4 8 8 C 1.38289 * 120.02841 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.04728 * 180.02562 * 8 7 6 10 10 C 1.38616 * 120.01312 * 85.41605 * 4 3 2 11 11 O 1.35951 * 120.06615 * 0.02562 * 10 4 3 12 12 S 1.52204 * 113.99967 * 91.39489 * 11 10 4 13 13 O 1.42101 * 104.27450 * 319.60780 * 12 11 10 14 14 O 1.42100 * 104.27566 * 191.75132 * 12 11 10 15 15 C 1.81394 * 104.44984 * 75.67809 * 12 11 10 16 16 C 1.52998 * 109.47111 * 174.17443 * 15 12 11 17 17 C 1.50696 * 109.47440 * 184.86475 * 16 15 12 18 18 H 1.08004 * 119.99801 * 4.96001 * 17 16 15 19 19 C 1.37875 * 120.00285 * 184.95595 * 17 16 15 20 20 N 1.31516 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00130 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 59.99707 * 21 19 17 23 23 H 1.48503 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47081 * 300.00305 * 21 19 17 25 25 H 1.08004 * 119.99425 * 5.04299 * 1 2 3 26 26 H 1.07997 * 120.00075 * 185.03128 * 1 2 3 27 27 H 1.08010 * 119.99364 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46803 * 2.46628 * 3 2 1 29 29 H 1.09002 * 109.47135 * 242.47060 * 3 2 1 30 30 H 1.08006 * 119.95068 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.93913 * 179.76533 * 6 5 4 32 32 H 1.07994 * 119.98243 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47548 * 294.17956 * 15 12 11 34 34 H 1.09005 * 109.47222 * 54.17701 * 15 12 11 35 35 H 1.08998 * 109.47550 * 304.87091 * 16 15 12 36 36 H 1.09003 * 109.47080 * 64.86557 * 16 15 12 37 37 H 0.97001 * 119.99846 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9753 1.3586 1.1987 5 6 2.5502 1.9683 2.3641 6 6 3.3870 2.0230 3.4628 7 6 4.6503 1.4636 3.4017 8 6 5.0789 0.8474 2.2402 9 9 6.3127 0.3003 2.1802 10 6 4.2386 0.7916 1.1349 11 8 4.6569 0.1871 -0.0088 12 16 5.3967 1.1131 -0.9636 13 8 4.6684 2.3318 -0.9045 14 8 5.4865 0.3711 -2.1722 15 6 7.0377 1.3154 -0.2174 16 6 7.9333 2.1166 -1.1644 17 6 9.3290 2.1828 -0.6001 18 1 9.5749 1.6353 0.2979 19 6 10.2921 2.9420 -1.2301 20 7 9.9926 3.6089 -2.3233 21 14 12.0225 3.0234 -0.5309 22 1 12.6072 1.6587 -0.4965 23 1 12.8614 3.9005 -1.3866 24 1 11.9743 3.5760 0.8465 25 1 -0.5399 0.9318 -0.0822 26 1 -0.5400 -0.9317 0.0820 27 1 1.8499 -0.9355 0.0004 28 1 1.3562 2.1330 0.0442 29 1 2.6566 1.3821 -0.9113 30 1 1.5643 2.4065 2.4147 31 1 3.0536 2.5033 4.3708 32 1 5.3024 1.5081 4.2614 33 1 6.9432 1.8466 0.7298 34 1 7.4802 0.3349 -0.0414 35 1 7.9583 1.6302 -2.1394 36 1 7.5368 3.1262 -1.2722 37 1 10.6702 4.1433 -2.7663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819886277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:42 Heat of formation + Delta-G solvation = -132.023939 kcal Electronic energy + Delta-G solvation = -24595.595218 eV Core-core repulsion = 20766.005357 eV Total energy + Delta-G solvation = -3829.589861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.26948 -42.25515 -39.32980 -38.44476 -37.38884 -36.17278 -35.97740 -33.26758 -32.21625 -31.28712 -27.87713 -27.63428 -24.76956 -23.77844 -23.31781 -21.70134 -20.78595 -19.83722 -19.19931 -18.66801 -18.48375 -18.15435 -17.29337 -16.83234 -16.75104 -16.56393 -16.08141 -15.81246 -15.35954 -15.28044 -14.87972 -14.74308 -14.48626 -14.08376 -13.92706 -13.75484 -13.53514 -13.42840 -13.18561 -13.04371 -12.97163 -12.85160 -12.76645 -12.35512 -12.28403 -12.20860 -12.05344 -11.81760 -11.21912 -10.67589 -10.31782 -10.05138 -9.87975 -8.29486 -6.44159 -1.16383 -0.13347 -0.02961 0.97746 1.33238 1.38601 1.42666 1.51072 2.31601 2.33200 2.42336 2.77397 2.80388 3.03375 3.47153 3.58366 3.68622 3.85491 3.89180 3.98964 4.08870 4.15801 4.21934 4.42871 4.58937 4.70413 4.80740 4.90886 4.92639 5.03985 5.14562 5.15930 5.17031 5.24093 5.62978 5.65142 5.71583 5.80751 6.00643 6.67338 7.25764 8.82804 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.004365 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.293515 B = 6413.295986 C = 7235.899180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.178 4.178 3 C -0.069 4.069 4 C -0.036 4.036 5 C -0.105 4.105 6 C -0.051 4.051 7 C -0.139 4.139 8 C 0.070 3.930 9 F -0.135 7.135 10 C -0.004 4.004 11 O -0.658 6.658 12 S 2.588 3.412 13 O -0.966 6.966 14 O -0.970 6.970 15 C -0.605 4.605 16 C 0.027 3.973 17 C -0.544 4.544 18 H 0.072 0.928 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.976 3.024 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.261 1.261 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.054 0.946 30 H 0.182 0.818 31 H 0.195 0.805 32 H 0.179 0.821 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.007 0.993 36 H 0.017 0.983 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 -3.607 15.695 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C -0.106 4.106 4 C -0.039 4.039 5 C -0.123 4.123 6 C -0.070 4.070 7 C -0.158 4.158 8 C 0.048 3.952 9 F -0.113 7.113 10 C -0.047 4.047 11 O -0.617 6.617 12 S 2.689 3.311 13 O -0.964 6.964 14 O -0.968 6.968 15 C -0.735 4.735 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.199 4.199 20 N -0.571 5.571 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.185 1.185 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.200 0.800 31 H 0.212 0.788 32 H 0.196 0.804 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.025 0.975 36 H 0.035 0.965 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.739 -3.692 14.998 25.064 hybrid contribution 2.204 -0.353 -0.460 2.279 sum -17.535 -4.045 14.539 23.135 Atomic orbital electron populations 1.24109 0.94530 1.03719 0.97460 1.22756 0.96836 0.96798 1.03181 1.19942 0.97814 0.98500 0.94358 1.20116 0.91015 0.94378 0.98365 1.21591 1.02628 0.97932 0.90130 1.21823 0.90784 0.94216 1.00136 1.21629 0.99512 0.98543 0.96089 1.18351 0.80803 1.00203 0.95822 1.91563 1.39402 1.83572 1.96793 1.18458 0.97249 1.05829 0.83116 1.85747 1.77570 1.59033 1.39347 1.05689 0.77415 0.73190 0.74845 1.93541 1.68456 1.48287 1.86117 1.93531 1.87505 1.71633 1.44178 1.30654 1.19614 1.10940 1.12258 1.18804 0.95452 0.94000 0.92899 1.21420 0.94804 1.30191 1.11834 0.90996 1.26107 1.04207 0.94464 0.95098 1.70086 1.36327 1.30961 1.19678 0.85344 0.77525 0.78621 0.78653 1.19023 1.20499 1.18547 0.86335 0.86733 0.88519 0.86266 0.92758 0.80041 0.78772 0.80371 0.84476 0.84431 0.97508 0.96476 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 14.31 67.78 0.97 -1.45 16 2 C -0.18 -3.82 9.50 25.65 0.24 -3.58 16 3 C -0.07 -1.70 5.28 29.10 0.15 -1.54 16 4 C -0.04 -0.89 4.55 -19.78 -0.09 -0.98 16 5 C -0.11 -1.56 9.68 22.26 0.22 -1.35 16 6 C -0.05 -0.59 10.04 22.28 0.22 -0.37 16 7 C -0.14 -2.41 10.02 22.30 0.22 -2.18 16 8 C 0.07 1.89 6.42 22.45 0.14 2.04 16 9 F -0.13 -4.16 14.40 44.97 0.65 -3.51 16 10 C 0.00 -0.12 4.76 22.53 0.11 -0.01 16 11 O -0.66 -23.93 9.22 -62.10 -0.57 -24.50 16 12 S 2.59 109.09 4.81 -56.49 -0.27 108.82 16 13 O -0.97 -41.09 14.64 -118.57 -1.74 -42.82 16 14 O -0.97 -47.19 18.09 -118.57 -2.15 -49.34 16 15 C -0.60 -26.59 4.36 71.98 0.31 -26.28 16 16 C 0.03 1.50 4.98 29.85 0.15 1.65 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.24 16 18 H 0.07 3.90 7.75 -2.91 -0.02 3.88 16 19 C 0.00 0.00 5.46 84.65 0.46 0.47 16 20 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 21 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 25 H 0.12 1.30 7.85 -2.91 -0.02 1.28 16 26 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 27 H 0.10 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.12 2.12 7.71 -2.39 -0.02 2.10 16 29 H 0.05 1.71 5.72 -2.39 -0.01 1.69 16 30 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 32 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.14 5.49 6.42 -2.39 -0.02 5.47 16 34 H 0.14 5.67 7.95 -2.39 -0.02 5.65 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -79.32 332.06 2.67 -76.65 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.08 Total: 10.46 kcal Atomic # 6 Polarization: -68.18 SS G_CDS: 3.35 Total: -64.83 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -112.21 SS G_CDS: -4.45 Total: -116.66 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.65 Total: -3.51 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 109.09 SS G_CDS: -0.27 Total: 108.82 kcal Total: -79.32 2.67 -76.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819886277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.371 kcal (2) G-P(sol) polarization free energy of solvation -79.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds