Wall clock time and date at job start Tue Mar 31 2020 10:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47189 * 240.00410 * 3 2 1 5 5 H 1.48504 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47518 * 120.00037 * 3 2 1 7 7 C 1.38806 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00371 * 187.34060 * 7 2 1 9 9 N 1.36943 * 119.99941 * 7.34413 * 7 2 1 10 10 C 1.46499 * 119.99871 * 21.94038 * 9 7 2 11 11 C 1.50697 * 109.47004 * 263.13119 * 10 9 7 12 12 O 1.20823 * 120.00322 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99813 * 201.94243 * 9 7 2 15 15 C 1.50701 * 109.47137 * 270.00032 * 14 9 7 16 16 O 1.21285 * 119.99925 * 359.97438 * 15 14 9 17 17 N 1.34776 * 120.00144 * 180.02562 * 15 14 9 18 18 C 1.39911 * 120.00301 * 184.86333 * 17 15 14 19 19 C 1.38850 * 120.04885 * 144.51574 * 18 17 15 20 20 C 1.38346 * 119.96041 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.97917 * 179.97438 * 20 19 18 22 22 C 1.38473 * 120.03923 * 359.97438 * 20 19 18 23 23 C 1.38468 * 120.09495 * 0.02562 * 22 20 19 24 24 F 1.35098 * 119.98278 * 179.97438 * 23 22 20 25 25 C 1.38355 * 120.03951 * 0.02562 * 23 22 20 26 26 H 0.97004 * 119.99834 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46874 * 23.13583 * 10 9 7 28 28 H 1.09004 * 109.46483 * 143.12831 * 10 9 7 29 29 H 0.96695 * 116.99735 * 180.02562 * 13 11 10 30 30 H 1.08995 * 109.47271 * 150.00070 * 14 9 7 31 31 H 1.08998 * 109.47134 * 30.00073 * 14 9 7 32 32 H 0.97008 * 119.99563 * 4.85847 * 17 15 14 33 33 H 1.08007 * 120.01934 * 359.70250 * 19 18 17 34 34 H 1.08001 * 119.95161 * 180.02562 * 22 20 19 35 35 H 1.08005 * 120.01678 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1200 9 7 1.3339 -2.3833 -0.1505 10 6 0.0097 -2.3941 -0.7770 11 6 -1.0520 -2.3848 0.2924 12 8 -0.7351 -2.3701 1.4583 13 8 -2.3498 -2.3929 -0.0502 14 6 1.9347 -3.6359 0.3144 15 6 2.7445 -4.2483 -0.7993 16 8 2.8127 -3.6933 -1.8755 17 7 3.3922 -5.4133 -0.5997 18 6 4.2254 -5.9304 -1.5975 19 6 5.3868 -6.6082 -1.2513 20 6 6.2091 -7.1193 -2.2395 21 9 7.3394 -7.7783 -1.9032 22 6 5.8743 -6.9557 -3.5732 23 6 4.7166 -6.2801 -3.9206 24 9 4.3924 -6.1214 -5.2225 25 6 3.8922 -5.7666 -2.9353 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1014 -1.5117 -1.4071 28 1 -0.0964 -3.2915 -1.3866 29 1 -2.9942 -2.3860 0.6706 30 1 1.1472 -4.3275 0.6136 31 1 2.5835 -3.4334 1.1665 32 1 3.2806 -5.8932 0.2360 33 1 5.6502 -6.7325 -0.2113 34 1 6.5171 -7.3556 -4.3435 35 1 2.9895 -5.2394 -3.2068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:44 Heat of formation + Delta-G solvation = -152.133630 kcal Electronic energy + Delta-G solvation = -25710.186829 eV Core-core repulsion = 21345.804522 eV Total energy + Delta-G solvation = -4364.382308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.15882 -49.03129 -40.31285 -38.81991 -38.07638 -35.64274 -34.54151 -34.34506 -31.60585 -30.42108 -30.02916 -28.04795 -26.54424 -23.61328 -23.04821 -22.29267 -20.60915 -19.94441 -18.59272 -17.50106 -17.00785 -16.79387 -16.62231 -16.45251 -16.06374 -15.93263 -15.58446 -15.38623 -15.16804 -15.04489 -14.63000 -14.33498 -14.16495 -13.55918 -13.40296 -13.22970 -12.89339 -12.25277 -12.07295 -12.02919 -11.84829 -11.43994 -11.08499 -11.02933 -10.66546 -10.30765 -10.25511 -10.17516 -10.08331 -9.65991 -9.25678 -8.85626 -8.67784 -8.36841 -7.17912 -6.00322 -3.44244 0.83917 0.89998 2.88640 2.95876 3.33956 3.38023 3.39276 3.40246 3.78749 3.84662 4.25065 4.28077 4.47742 4.67820 4.75151 4.95389 5.01354 5.18212 5.26589 5.46392 5.69157 5.79341 5.88869 5.91992 6.05171 6.12465 6.33895 6.35027 6.80497 6.85795 7.07216 7.46559 7.58537 7.76683 8.07264 8.47892 8.90430 9.33631 9.54822 9.95264 11.09681 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003530 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.723076 B = 7931.035831 C = 8421.087647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.007 3.993 3 Si 0.922 3.078 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.077 0.923 9 N -0.543 5.543 10 C 0.191 3.809 11 C 0.483 3.517 12 O -0.524 6.524 13 O -0.540 6.540 14 C 0.135 3.865 15 C 0.477 3.523 16 O -0.493 6.493 17 N -0.684 5.684 18 C 0.220 3.780 19 C -0.201 4.201 20 C 0.147 3.853 21 F -0.132 7.132 22 C -0.219 4.219 23 C 0.150 3.850 24 F -0.129 7.129 25 C -0.171 4.171 26 H 0.261 0.739 27 H 0.128 0.872 28 H 0.047 0.953 29 H 0.382 0.618 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -14.594 -2.485 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.190 4.190 3 Si 0.751 3.249 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.259 5.259 10 C 0.062 3.938 11 C 0.323 3.677 12 O -0.411 6.411 13 O -0.351 6.351 14 C 0.002 3.998 15 C 0.263 3.737 16 O -0.364 6.364 17 N -0.332 5.332 18 C 0.122 3.878 19 C -0.222 4.222 20 C 0.127 3.873 21 F -0.111 7.111 22 C -0.239 4.239 23 C 0.130 3.870 24 F -0.108 7.108 25 C -0.192 4.192 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.065 0.935 29 H 0.237 0.763 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.249 0.751 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.099 -13.882 -3.243 15.505 hybrid contribution 0.166 0.658 0.843 1.082 sum 6.265 -13.224 -2.400 14.828 Atomic orbital electron populations 1.69660 1.05347 1.26270 1.54634 1.24951 0.95548 0.98639 0.99887 0.86060 0.78562 0.82108 0.78155 1.20744 1.21447 1.20805 1.19181 0.90963 0.82833 1.45083 0.90513 1.43340 1.14232 1.01806 1.66568 1.20247 0.80811 1.02216 0.90520 1.25110 0.81258 0.69449 0.91840 1.90498 1.82070 1.46737 1.21770 1.84624 1.19120 1.87149 1.44169 1.20698 0.96508 0.90100 0.92464 1.23821 0.78954 0.78393 0.92518 1.90668 1.59128 1.60202 1.26393 1.44189 1.46465 1.24254 1.18286 1.17191 0.89373 0.92620 0.88576 1.20872 0.94823 1.06265 1.00287 1.16838 0.83588 0.94797 0.92069 1.91522 1.48261 1.78264 1.93046 1.20894 0.99673 1.07274 0.96081 1.17045 0.93940 0.97621 0.78423 1.91533 1.92375 1.93566 1.33308 1.21380 1.03032 1.03871 0.90963 0.92895 0.85482 0.93532 0.76269 0.90517 0.89102 0.75118 0.83798 0.83701 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.10 8.83 55.49 0.49 -24.61 16 2 C 0.01 0.19 5.17 -17.43 -0.09 0.10 16 3 Si 0.92 21.52 29.56 -169.99 -5.02 16.50 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.57 9.69 -15.06 -0.15 -6.72 16 8 H 0.08 1.97 7.84 -52.48 -0.41 1.56 16 9 N -0.54 -12.65 1.53 -175.99 -0.27 -12.92 16 10 C 0.19 4.36 5.47 -5.20 -0.03 4.33 16 11 C 0.48 11.07 6.49 36.00 0.23 11.30 16 12 O -0.52 -13.44 16.93 -18.75 -0.32 -13.76 16 13 O -0.54 -10.52 13.42 -39.26 -0.53 -11.05 16 14 C 0.13 2.42 6.08 -5.19 -0.03 2.39 16 15 C 0.48 7.99 7.74 -10.99 -0.09 7.91 16 16 O -0.49 -10.25 13.88 5.55 0.08 -10.17 16 17 N -0.68 -8.38 5.33 -9.88 -0.05 -8.44 16 18 C 0.22 2.79 6.29 -83.72 -0.53 2.27 16 19 C -0.20 -2.16 9.94 -39.32 -0.39 -2.55 16 20 C 0.15 1.63 7.30 -39.45 -0.29 1.34 16 21 F -0.13 -1.45 17.27 2.25 0.04 -1.41 16 22 C -0.22 -2.45 10.00 -39.41 -0.39 -2.85 16 23 C 0.15 1.95 7.30 -39.45 -0.29 1.66 16 24 F -0.13 -1.76 17.27 2.25 0.04 -1.72 16 25 C -0.17 -2.43 8.67 -39.32 -0.34 -2.77 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.13 3.24 6.24 -51.93 -0.32 2.92 16 28 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.38 5.78 9.10 45.56 0.41 6.20 16 30 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.09 1.54 8.04 -51.93 -0.42 1.13 16 32 H 0.41 3.47 8.82 -40.82 -0.36 3.11 16 33 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.16 2.58 6.24 -52.48 -0.33 2.25 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -32.74 322.40 -5.31 -38.05 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -2.25 Total: 8.25 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: -2.38 Total: 16.42 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.17 Total: -45.97 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.77 Total: -34.98 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.74 -5.31 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.086 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds