Wall clock time and date at job start Tue Mar 31 2020 10:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47189 * 240.00410 * 3 2 1 5 5 H 1.48504 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47518 * 120.00037 * 3 2 1 7 7 C 1.38806 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00371 * 187.34060 * 7 2 1 9 9 N 1.36943 * 119.99941 * 7.34413 * 7 2 1 10 10 C 1.46499 * 119.99871 * 21.94038 * 9 7 2 11 11 C 1.50697 * 109.47004 * 263.13119 * 10 9 7 12 12 O 1.20823 * 120.00322 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99813 * 201.94243 * 9 7 2 15 15 C 1.50701 * 109.47137 * 270.00032 * 14 9 7 16 16 O 1.21285 * 119.99925 * 359.97438 * 15 14 9 17 17 N 1.34776 * 120.00144 * 180.02562 * 15 14 9 18 18 C 1.39911 * 120.00301 * 184.86333 * 17 15 14 19 19 C 1.38850 * 120.04885 * 144.51574 * 18 17 15 20 20 C 1.38346 * 119.96041 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.97917 * 179.97438 * 20 19 18 22 22 C 1.38473 * 120.03923 * 359.97438 * 20 19 18 23 23 C 1.38468 * 120.09495 * 0.02562 * 22 20 19 24 24 F 1.35098 * 119.98278 * 179.97438 * 23 22 20 25 25 C 1.38355 * 120.03951 * 0.02562 * 23 22 20 26 26 H 0.97004 * 119.99834 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46874 * 23.13583 * 10 9 7 28 28 H 1.09004 * 109.46483 * 143.12831 * 10 9 7 29 29 H 0.96695 * 116.99735 * 180.02562 * 13 11 10 30 30 H 1.08995 * 109.47271 * 150.00070 * 14 9 7 31 31 H 1.08998 * 109.47134 * 30.00073 * 14 9 7 32 32 H 0.97008 * 119.99563 * 4.85847 * 17 15 14 33 33 H 1.08007 * 120.01934 * 359.70250 * 19 18 17 34 34 H 1.08001 * 119.95161 * 180.02562 * 22 20 19 35 35 H 1.08005 * 120.01678 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1200 9 7 1.3339 -2.3833 -0.1505 10 6 0.0097 -2.3941 -0.7770 11 6 -1.0520 -2.3848 0.2924 12 8 -0.7351 -2.3701 1.4583 13 8 -2.3498 -2.3929 -0.0502 14 6 1.9347 -3.6359 0.3144 15 6 2.7445 -4.2483 -0.7993 16 8 2.8127 -3.6933 -1.8755 17 7 3.3922 -5.4133 -0.5997 18 6 4.2254 -5.9304 -1.5975 19 6 5.3868 -6.6082 -1.2513 20 6 6.2091 -7.1193 -2.2395 21 9 7.3394 -7.7783 -1.9032 22 6 5.8743 -6.9557 -3.5732 23 6 4.7166 -6.2801 -3.9206 24 9 4.3924 -6.1214 -5.2225 25 6 3.8922 -5.7666 -2.9353 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1014 -1.5117 -1.4071 28 1 -0.0964 -3.2915 -1.3866 29 1 -2.9942 -2.3860 0.6706 30 1 1.1472 -4.3275 0.6136 31 1 2.5835 -3.4334 1.1665 32 1 3.2806 -5.8932 0.2360 33 1 5.6502 -6.7325 -0.2113 34 1 6.5171 -7.3556 -4.3435 35 1 2.9895 -5.2394 -3.2068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:44 Heat of formation + Delta-G solvation = -173.729423 kcal Electronic energy + Delta-G solvation = -25711.123293 eV Core-core repulsion = 21345.804522 eV Total energy + Delta-G solvation = -4365.318771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06317 -50.02923 -41.50641 -40.54236 -39.26946 -37.31426 -36.21767 -35.63415 -33.43376 -31.38299 -31.21301 -29.63475 -28.26119 -25.05986 -24.08316 -23.63883 -22.11552 -21.42037 -19.65448 -18.95125 -18.55552 -18.42882 -17.71470 -17.50913 -17.29029 -17.02334 -16.86007 -16.68341 -16.54424 -16.34543 -16.04794 -15.90152 -15.34904 -15.19771 -14.97793 -14.71589 -13.98336 -13.59614 -13.37052 -13.16949 -13.03439 -12.92700 -12.89313 -12.70764 -12.41025 -12.13887 -12.06439 -11.88754 -11.38665 -11.28796 -10.88845 -10.57359 -9.82125 -9.39433 -8.99706 -7.97790 -5.40985 -0.11951 -0.07377 1.46744 1.49353 1.55039 1.62992 1.84764 2.00377 2.38653 2.47010 2.76351 2.89851 3.28660 3.32247 3.50904 3.78009 3.84941 3.93181 4.02329 4.33351 4.49016 4.58440 4.71766 4.75464 4.85429 4.97212 5.07701 5.18659 5.23909 5.31826 5.55742 5.79201 6.13941 6.18038 6.46063 6.97907 7.23793 7.57572 7.74136 8.05899 9.09838 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003530 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.723076 B = 7931.035831 C = 8421.087647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.044 4.044 3 Si 0.975 3.025 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.562 5.562 10 C 0.192 3.808 11 C 0.489 3.511 12 O -0.554 6.554 13 O -0.533 6.533 14 C 0.133 3.867 15 C 0.488 3.512 16 O -0.539 6.539 17 N -0.662 5.662 18 C 0.206 3.794 19 C -0.181 4.181 20 C 0.148 3.852 21 F -0.127 7.127 22 C -0.206 4.206 23 C 0.137 3.863 24 F -0.137 7.137 25 C -0.188 4.188 26 H 0.252 0.748 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.404 0.596 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.433 0.567 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.203 -16.288 -1.746 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.239 4.239 3 Si 0.804 3.196 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.280 5.280 10 C 0.063 3.937 11 C 0.331 3.669 12 O -0.444 6.444 13 O -0.344 6.344 14 C 0.002 3.998 15 C 0.274 3.726 16 O -0.413 6.413 17 N -0.311 5.311 18 C 0.109 3.891 19 C -0.202 4.202 20 C 0.128 3.872 21 F -0.106 7.106 22 C -0.226 4.226 23 C 0.116 3.884 24 F -0.116 7.116 25 C -0.209 4.209 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.262 0.738 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.274 0.726 33 H 0.192 0.808 34 H 0.184 0.816 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.491 -15.658 -2.478 17.534 hybrid contribution -0.225 1.023 0.579 1.197 sum 7.266 -14.635 -1.899 16.449 Atomic orbital electron populations 1.69810 1.06175 1.25905 1.56230 1.25596 0.96300 1.01163 1.00800 0.85221 0.77354 0.79089 0.77973 1.20885 1.21960 1.20307 1.19393 0.91096 0.84185 1.43610 0.90783 1.43427 1.14479 1.02770 1.67315 1.20115 0.81250 1.01820 0.90533 1.25009 0.82113 0.68560 0.91170 1.90475 1.82802 1.48297 1.22818 1.84546 1.18402 1.86435 1.45042 1.20889 0.97319 0.88608 0.92939 1.23209 0.78881 0.79244 0.91239 1.90673 1.60922 1.61903 1.27829 1.43697 1.45398 1.22937 1.19092 1.17190 0.90282 0.93733 0.87858 1.21065 0.93241 1.04093 1.01809 1.16848 0.83705 0.94679 0.92002 1.91545 1.47967 1.78105 1.92969 1.21087 0.98786 1.05777 0.96974 1.17114 0.94697 0.98595 0.77948 1.91510 1.92556 1.93759 1.33770 1.21297 1.02774 1.04540 0.92292 0.93875 0.88452 0.91243 0.73795 0.88257 0.87984 0.72645 0.80797 0.81572 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.15 8.83 21.65 0.19 -51.96 16 2 C -0.04 -2.38 5.17 84.86 0.44 -1.94 16 3 Si 0.98 44.76 29.56 68.60 2.03 46.79 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.25 -13.28 9.69 84.03 0.81 -12.47 16 8 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 9 N -0.56 -26.15 1.53 -710.70 -1.09 -27.24 16 10 C 0.19 8.81 5.47 85.63 0.47 9.28 16 11 C 0.49 22.24 6.49 71.23 0.46 22.70 16 12 O -0.55 -28.20 16.93 21.97 0.37 -27.82 16 13 O -0.53 -20.18 13.42 -51.44 -0.69 -20.87 16 14 C 0.13 4.62 6.08 85.63 0.52 5.14 16 15 C 0.49 15.85 7.74 87.66 0.68 16.53 16 16 O -0.54 -22.57 13.88 -3.04 -0.04 -22.62 16 17 N -0.66 -14.83 5.33 -303.56 -1.62 -16.45 16 18 C 0.21 4.84 6.29 38.14 0.24 5.08 16 19 C -0.18 -3.29 9.94 22.44 0.22 -3.06 16 20 C 0.15 2.81 7.30 22.35 0.16 2.97 16 21 F -0.13 -2.35 17.27 44.97 0.78 -1.57 16 22 C -0.21 -4.14 10.00 22.38 0.22 -3.92 16 23 C 0.14 3.44 7.30 22.35 0.16 3.60 16 24 F -0.14 -3.72 17.27 44.97 0.78 -2.94 16 25 C -0.19 -5.26 8.67 22.44 0.19 -5.06 16 26 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.10 5.10 6.24 -2.39 -0.01 5.08 16 28 H 0.07 2.80 8.12 -2.39 -0.02 2.78 16 29 H 0.40 11.59 9.10 -74.06 -0.67 10.92 16 30 H 0.10 2.97 8.07 -2.39 -0.02 2.95 16 31 H 0.10 3.29 8.04 -2.39 -0.02 3.27 16 32 H 0.43 5.93 8.82 -92.70 -0.82 5.11 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.13 4.49 6.24 -2.91 -0.02 4.47 16 Total: -1.00 -71.27 322.40 4.99 -66.27 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.30 Total: 19.55 kcal Atomic # 6 Polarization: 34.27 SS G_CDS: 4.59 Total: 38.86 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.51 Total: -95.65 kcal Atomic # 8 Polarization: -70.95 SS G_CDS: -0.36 Total: -71.31 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 1.55 Total: -4.51 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.27 4.99 -66.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.456 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds