Wall clock time and date at job start Tue Mar 31 2020 10:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99541 * 0.02562 * 11 10 9 13 13 O 1.34221 * 120.00092 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99903 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47215 * 30.00423 * 14 13 11 16 16 C 1.53007 * 109.47350 * 269.99854 * 14 13 11 17 17 F 1.39899 * 109.46721 * 64.99879 * 16 14 13 18 18 C 1.53005 * 109.47010 * 150.00214 * 14 13 11 19 19 O 1.42896 * 109.47379 * 65.00052 * 18 14 13 20 20 C 1.35897 * 116.99990 * 180.02562 * 19 18 14 21 21 C 1.38734 * 120.05562 * 359.72543 * 20 19 18 22 22 C 1.38152 * 119.93962 * 179.74771 * 21 20 19 23 23 C 1.38263 * 120.05557 * 0.50154 * 22 21 20 24 24 C 1.38261 * 120.11437 * 359.77101 * 23 22 21 25 25 C 1.38145 * 120.05678 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 28 28 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 29 29 H 1.08999 * 109.47006 * 185.00292 * 16 14 13 30 30 H 1.09001 * 109.46646 * 305.00361 * 16 14 13 31 31 H 1.09001 * 109.46730 * 184.99922 * 18 14 13 32 32 H 1.09001 * 109.47133 * 304.99385 * 18 14 13 33 33 H 1.07990 * 120.03006 * 359.97438 * 21 20 19 34 34 H 1.07995 * 119.96695 * 180.27669 * 22 21 20 35 35 H 1.08005 * 119.93841 * 179.74961 * 23 22 21 36 36 H 1.07998 * 119.97425 * 179.97438 * 24 23 22 37 37 H 1.07997 * 120.02980 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8405 -6.3389 -0.0003 14 6 2.2608 -7.6702 -0.0002 15 1 1.2997 -7.6480 -0.5138 16 6 2.0577 -8.1380 1.4423 17 9 1.1097 -7.3214 2.0682 18 6 3.2024 -8.6365 -0.7219 19 8 4.4206 -8.7546 0.0156 20 6 5.3721 -9.5809 -0.4930 21 6 5.1359 -10.2683 -1.6746 22 6 6.1069 -11.1037 -2.1922 23 6 7.3091 -11.2629 -1.5283 24 6 7.5448 -10.5832 -0.3475 25 6 6.5792 -9.7426 0.1716 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8895 28 1 3.1245 -3.7314 -0.8905 29 1 1.7062 -9.1697 1.4436 30 1 3.0033 -8.0756 1.9810 31 1 2.7286 -9.6150 -0.8000 32 1 3.4176 -8.2563 -1.7205 33 1 4.1953 -10.1478 -2.1912 34 1 5.9252 -11.6356 -3.1144 35 1 8.0653 -11.9195 -1.9325 36 1 8.4846 -10.7095 0.1694 37 1 6.7636 -9.2123 1.0941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836124798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:21 Heat of formation + Delta-G solvation = -149.168403 kcal Electronic energy + Delta-G solvation = -22764.668079 eV Core-core repulsion = 18934.334778 eV Total energy + Delta-G solvation = -3830.333301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.58551 -40.59159 -39.96336 -37.85631 -36.23444 -32.63880 -32.47460 -31.29896 -30.00448 -29.37718 -26.70863 -25.55515 -23.37317 -22.72515 -21.97495 -20.63013 -18.73048 -17.97944 -17.44396 -16.82838 -16.63475 -16.22553 -15.92628 -15.68119 -15.50632 -15.15835 -14.83745 -14.71054 -14.45737 -14.06949 -13.76323 -13.39250 -13.08740 -12.80448 -12.76289 -12.53215 -12.19254 -11.87362 -11.81443 -11.36073 -11.22649 -11.08810 -11.06981 -11.01271 -10.80083 -10.35438 -10.00095 -9.88060 -9.34278 -9.11312 -8.53333 -8.34074 -6.58733 -6.26381 -3.98663 1.00096 1.12096 2.50491 2.62663 2.78573 3.20552 3.23457 3.29854 3.46216 3.48589 4.02168 4.15594 4.28048 4.48771 4.56415 4.65450 4.71446 4.79318 4.80037 4.88567 5.04991 5.09182 5.09650 5.16661 5.27812 5.36645 5.60354 5.63303 5.67427 5.78780 5.96459 6.06930 6.09100 6.20271 6.41964 6.59518 7.06286 7.56820 8.13471 8.31714 9.19251 10.81179 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.019565 B = 0.002616 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.783427 B =10699.411930 C =11589.479167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.076 0.924 9 S -0.057 6.057 10 C -0.127 4.127 11 C 0.476 3.524 12 O -0.476 6.476 13 O -0.345 6.345 14 C 0.059 3.941 15 H 0.117 0.883 16 C 0.048 3.952 17 F -0.202 7.202 18 C 0.067 3.933 19 O -0.304 6.304 20 C 0.132 3.868 21 C -0.211 4.211 22 C -0.080 4.080 23 C -0.162 4.162 24 C -0.081 4.081 25 C -0.151 4.151 26 H 0.269 0.731 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.363 -24.018 -2.304 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.170 5.830 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.360 6.360 13 O -0.264 6.264 14 C 0.003 3.997 15 H 0.134 0.866 16 C -0.007 4.007 17 F -0.183 7.183 18 C -0.009 4.009 19 O -0.218 6.218 20 C 0.087 3.913 21 C -0.230 4.230 22 C -0.099 4.099 23 C -0.180 4.180 24 C -0.099 4.099 25 C -0.170 4.170 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.673 -24.057 -2.109 26.403 hybrid contribution 1.651 1.135 -0.229 2.016 sum 12.324 -22.923 -2.339 26.130 Atomic orbital electron populations 1.70024 1.05980 1.27508 1.46719 1.25009 0.95072 0.99125 0.94371 0.86064 0.79620 0.81592 0.77926 1.19500 1.20521 1.20505 1.22887 0.95061 0.91160 1.59204 0.90546 1.85430 1.04243 0.96509 1.96864 1.23290 1.07009 0.90679 1.06462 1.23398 0.85373 0.87126 0.72384 1.90679 1.16645 1.85183 1.43478 1.86702 1.40679 1.14066 1.84909 1.23375 0.97770 0.81048 0.97518 0.86563 1.22359 0.92448 0.93739 0.92170 1.92879 1.66730 1.75096 1.83576 1.22897 0.83445 0.98549 0.95980 1.86146 1.24726 1.61579 1.49328 1.19051 0.89341 0.90288 0.92642 1.21294 1.01700 1.02357 0.97643 1.20959 0.93066 0.96747 0.99089 1.21077 0.97922 1.02266 0.96723 1.20993 0.98386 0.94994 0.95533 1.20502 0.91942 1.02522 1.01993 0.92134 0.87886 0.87966 0.89418 0.88999 0.89510 0.90014 0.85442 0.85817 0.85977 0.85361 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 8 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 9 S -0.06 -1.53 20.58 -107.50 -2.21 -3.75 16 10 C -0.13 -2.64 6.27 36.01 0.23 -2.41 16 11 C 0.48 9.28 7.60 36.01 0.27 9.56 16 12 O -0.48 -10.47 14.26 -18.75 -0.27 -10.74 16 13 O -0.35 -5.53 9.85 -42.00 -0.41 -5.94 16 14 C 0.06 0.72 2.81 -26.72 -0.08 0.65 16 15 H 0.12 1.44 7.16 -51.93 -0.37 1.06 16 16 C 0.05 0.56 6.93 37.16 0.26 0.82 16 17 F -0.20 -3.32 16.13 2.25 0.04 -3.29 16 18 C 0.07 0.60 4.62 37.16 0.17 0.77 16 19 O -0.30 -3.27 9.33 -22.98 -0.21 -3.48 16 20 C 0.13 1.31 6.69 -39.21 -0.26 1.05 16 21 C -0.21 -1.78 9.04 -39.43 -0.36 -2.13 16 22 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 23 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 24 C -0.08 -0.62 10.04 -39.61 -0.40 -1.01 16 25 C -0.15 -1.38 9.99 -39.43 -0.39 -1.78 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.10 2.03 8.14 -51.92 -0.42 1.60 16 28 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.03 7.73 -51.93 -0.40 0.62 16 31 H 0.09 0.51 7.65 -51.93 -0.40 0.12 16 32 H 0.08 0.70 7.67 -51.93 -0.40 0.30 16 33 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -34.51 342.58 -7.75 -42.26 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.40 Total: -1.40 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.15 Total: -9.93 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.73 Total: -25.21 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.90 Total: -20.15 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.51 -7.75 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836124798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.905 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds