Wall clock time and date at job start Tue Mar 31 2020 10:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99541 * 0.02562 * 11 10 9 13 13 O 1.34221 * 120.00092 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99903 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47215 * 30.00423 * 14 13 11 16 16 C 1.53007 * 109.47350 * 269.99854 * 14 13 11 17 17 F 1.39899 * 109.46721 * 64.99879 * 16 14 13 18 18 C 1.53005 * 109.47010 * 150.00214 * 14 13 11 19 19 O 1.42896 * 109.47379 * 65.00052 * 18 14 13 20 20 C 1.35897 * 116.99990 * 180.02562 * 19 18 14 21 21 C 1.38734 * 120.05562 * 359.72543 * 20 19 18 22 22 C 1.38152 * 119.93962 * 179.74771 * 21 20 19 23 23 C 1.38263 * 120.05557 * 0.50154 * 22 21 20 24 24 C 1.38261 * 120.11437 * 359.77101 * 23 22 21 25 25 C 1.38145 * 120.05678 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 28 28 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 29 29 H 1.08999 * 109.47006 * 185.00292 * 16 14 13 30 30 H 1.09001 * 109.46646 * 305.00361 * 16 14 13 31 31 H 1.09001 * 109.46730 * 184.99922 * 18 14 13 32 32 H 1.09001 * 109.47133 * 304.99385 * 18 14 13 33 33 H 1.07990 * 120.03006 * 359.97438 * 21 20 19 34 34 H 1.07995 * 119.96695 * 180.27669 * 22 21 20 35 35 H 1.08005 * 119.93841 * 179.74961 * 23 22 21 36 36 H 1.07998 * 119.97425 * 179.97438 * 24 23 22 37 37 H 1.07997 * 120.02980 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8405 -6.3389 -0.0003 14 6 2.2608 -7.6702 -0.0002 15 1 1.2997 -7.6480 -0.5138 16 6 2.0577 -8.1380 1.4423 17 9 1.1097 -7.3214 2.0682 18 6 3.2024 -8.6365 -0.7219 19 8 4.4206 -8.7546 0.0156 20 6 5.3721 -9.5809 -0.4930 21 6 5.1359 -10.2683 -1.6746 22 6 6.1069 -11.1037 -2.1922 23 6 7.3091 -11.2629 -1.5283 24 6 7.5448 -10.5832 -0.3475 25 6 6.5792 -9.7426 0.1716 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8895 28 1 3.1245 -3.7314 -0.8905 29 1 1.7062 -9.1697 1.4436 30 1 3.0033 -8.0756 1.9810 31 1 2.7286 -9.6150 -0.8000 32 1 3.4176 -8.2563 -1.7205 33 1 4.1953 -10.1478 -2.1912 34 1 5.9252 -11.6356 -3.1144 35 1 8.0653 -11.9195 -1.9325 36 1 8.4846 -10.7095 0.1694 37 1 6.7636 -9.2123 1.0941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836124798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:21 Heat of formation + Delta-G solvation = -169.104118 kcal Electronic energy + Delta-G solvation = -22765.532557 eV Core-core repulsion = 18934.334778 eV Total energy + Delta-G solvation = -3831.197778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.72207 -41.66768 -40.96701 -38.60230 -37.54252 -34.62175 -33.62786 -31.89366 -31.16415 -30.45347 -27.72551 -27.50214 -24.26086 -23.36652 -22.98038 -21.73079 -20.00407 -19.39342 -18.78770 -17.92222 -17.78309 -16.94948 -16.90838 -16.88622 -16.75477 -16.50731 -16.33206 -15.97331 -15.49220 -15.29526 -14.64907 -14.48159 -14.30232 -14.19377 -13.81847 -13.51901 -13.33319 -13.19967 -13.03525 -12.92124 -12.64535 -12.42896 -12.17426 -11.95523 -11.84896 -11.76730 -11.61624 -11.38524 -11.18312 -10.39179 -9.91936 -9.15769 -8.74612 -8.38534 -6.18231 0.42581 0.51900 0.96169 1.10337 1.39602 1.41507 1.55321 1.80520 2.06800 2.22747 2.88013 2.96450 3.11880 3.24205 3.42638 3.64534 3.80664 3.90815 4.00109 4.04289 4.13809 4.13865 4.29147 4.33068 4.37951 4.41367 4.52742 4.58432 4.66920 4.77502 5.12084 5.18935 5.37606 5.40233 5.51365 5.64206 5.86863 6.17340 6.41897 6.64501 7.03166 8.71024 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.019565 B = 0.002616 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.783427 B =10699.411930 C =11589.479167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.085 0.915 9 S -0.134 6.134 10 C -0.108 4.108 11 C 0.485 3.515 12 O -0.506 6.506 13 O -0.342 6.342 14 C 0.052 3.948 15 H 0.115 0.885 16 C 0.040 3.960 17 F -0.232 7.232 18 C 0.072 3.928 19 O -0.323 6.323 20 C 0.110 3.890 21 C -0.218 4.218 22 C -0.087 4.087 23 C -0.165 4.165 24 C -0.086 4.086 25 C -0.171 4.171 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.472 -25.292 -3.068 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.093 5.907 10 C -0.257 4.257 11 C 0.327 3.673 12 O -0.393 6.393 13 O -0.260 6.260 14 C -0.003 4.003 15 H 0.133 0.867 16 C -0.015 4.015 17 F -0.213 7.213 18 C -0.003 4.003 19 O -0.237 6.237 20 C 0.066 3.934 21 C -0.237 4.237 22 C -0.105 4.105 23 C -0.183 4.183 24 C -0.104 4.104 25 C -0.190 4.190 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.808 -25.364 -2.876 28.560 hybrid contribution 1.085 1.315 -0.003 1.705 sum 13.893 -24.049 -2.879 27.922 Atomic orbital electron populations 1.70172 1.07919 1.28750 1.47740 1.26134 0.96016 1.03305 0.93536 0.84869 0.78559 0.76133 0.78167 1.18114 1.19726 1.19879 1.23220 0.95467 0.91593 1.59269 0.89727 1.85521 1.09069 0.98994 1.97142 1.23078 1.04317 0.90283 1.08004 1.22987 0.84995 0.87468 0.71826 1.90670 1.17909 1.85707 1.45052 1.86656 1.39978 1.15179 1.84138 1.23792 0.98708 0.79319 0.98506 0.86718 1.22706 0.92113 0.95236 0.91403 1.92818 1.67984 1.76284 1.84210 1.22972 0.82882 0.99266 0.95210 1.86093 1.25349 1.62287 1.50013 1.19258 0.89484 0.91060 0.93646 1.21533 1.02711 1.02215 0.97233 1.21316 0.92886 0.96452 0.99837 1.21434 0.98433 1.02074 0.96396 1.21289 0.98813 0.94420 0.95853 1.20705 0.92488 1.03391 1.02382 0.91817 0.86580 0.86034 0.85256 0.88623 0.85758 0.89491 0.83905 0.83623 0.83793 0.83414 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 2 C 0.02 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.24 9.50 67.95 0.65 -30.60 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.13 -7.43 20.58 -56.49 -1.16 -8.59 16 10 C -0.11 -4.52 6.27 71.24 0.45 -4.07 16 11 C 0.49 18.95 7.60 71.24 0.54 19.50 16 12 O -0.51 -22.72 14.26 21.96 0.31 -22.41 16 13 O -0.34 -10.70 9.85 -48.68 -0.48 -11.18 16 14 C 0.05 1.21 2.81 30.60 0.09 1.29 16 15 H 0.12 2.74 7.16 -2.39 -0.02 2.72 16 16 C 0.04 0.88 6.93 71.98 0.50 1.38 16 17 F -0.23 -7.65 16.13 44.97 0.73 -6.92 16 18 C 0.07 1.13 4.62 71.98 0.33 1.46 16 19 O -0.32 -6.46 9.33 -88.99 -0.83 -7.29 16 20 C 0.11 2.04 6.69 22.51 0.15 2.19 16 21 C -0.22 -3.19 9.04 22.37 0.20 -2.99 16 22 C -0.09 -1.08 10.04 22.26 0.22 -0.85 16 23 C -0.17 -1.98 10.04 22.28 0.22 -1.76 16 24 C -0.09 -1.16 10.04 22.25 0.22 -0.93 16 25 C -0.17 -2.98 9.99 22.37 0.22 -2.76 16 26 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 28 H 0.12 4.57 8.14 -2.40 -0.02 4.55 16 29 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 2.04 7.73 -2.39 -0.02 2.02 16 31 H 0.12 1.05 7.65 -2.39 -0.02 1.03 16 32 H 0.09 1.30 7.67 -2.39 -0.02 1.28 16 33 H 0.14 1.50 6.30 -2.92 -0.02 1.49 16 34 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -76.52 342.58 6.23 -70.29 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.08 Total: 12.48 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 4.26 Total: -16.83 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.29 Total: -55.10 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.00 Total: -40.89 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.73 Total: -6.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.16 Total: -8.59 kcal Total: -76.52 6.23 -70.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836124798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.812 kcal (2) G-P(sol) polarization free energy of solvation -76.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds