Wall clock time and date at job start Tue Mar 31 2020 10:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30213 * 126.78993 * 2 1 4 4 O 1.20912 * 111.64759 * 179.97438 * 3 2 1 5 5 C 1.34066 * 111.55451 * 359.76155 * 4 3 2 6 6 Cl 1.73600 * 126.79822 * 180.25765 * 5 4 3 7 7 C 1.35680 * 106.40299 * 0.38036 * 5 4 3 8 8 C 1.50703 * 128.01116 * 179.91575 * 7 5 4 9 9 C 1.50695 * 109.46828 * 269.67684 * 8 7 5 10 10 O 1.21282 * 120.00475 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.47423 * 125.64558 * 359.97011 * 11 9 8 13 13 C 1.54913 * 104.83089 * 155.90580 * 12 11 9 14 14 C 1.55160 * 101.57624 * 37.01185 * 13 12 11 15 15 O 1.42897 * 110.72162 * 83.04075 * 14 13 12 16 16 C 1.50702 * 110.71656 * 206.13323 * 14 13 12 17 17 H 1.08002 * 120.00299 * 118.55159 * 16 14 13 18 18 C 1.37884 * 119.99942 * 298.26718 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47020 * 125.64951 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.47046 * 270.02673 * 1 2 3 26 26 H 1.09002 * 109.47347 * 30.02936 * 1 2 3 27 27 H 1.09006 * 109.47276 * 150.02961 * 1 2 3 28 28 H 1.09000 * 109.46824 * 149.67232 * 8 7 5 29 29 H 1.08997 * 109.47179 * 29.67671 * 8 7 5 30 30 H 1.09003 * 110.36676 * 37.07285 * 12 11 9 31 31 H 1.08990 * 110.36997 * 274.74671 * 12 11 9 32 32 H 1.08989 * 111.00550 * 278.93903 * 13 12 11 33 33 H 1.08995 * 111.00094 * 155.08083 * 13 12 11 34 34 H 0.96698 * 114.00670 * 63.83578 * 15 14 13 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.88085 * 61.60181 * 24 11 9 37 37 H 1.09002 * 109.87937 * 300.44137 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4539 0.7270 0.0005 5 6 3.6037 -0.6053 0.0061 6 17 5.1012 -1.4834 0.0150 7 6 2.3530 -1.1314 0.0006 8 6 1.9580 -2.5858 0.0017 9 6 1.8262 -3.0715 -1.4187 10 8 2.0322 -2.3115 -2.3411 11 7 1.4783 -4.3503 -1.6641 12 6 1.1997 -5.3761 -0.6425 13 6 0.2859 -6.4055 -1.3531 14 6 0.8880 -6.4214 -2.7831 15 8 2.0176 -7.2943 -2.8464 16 6 -0.1528 -6.8253 -3.7953 17 1 -0.4345 -6.1417 -4.5825 18 6 -0.7413 -8.0700 -3.7199 19 7 -0.3982 -8.9025 -2.7614 20 14 -2.0258 -8.5736 -4.9791 21 1 -1.3586 -9.2331 -6.1303 22 1 -2.9862 -9.5191 -4.3556 23 1 -2.7538 -7.3690 -5.4526 24 6 1.3150 -4.9537 -2.9948 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8903 -0.5134 28 1 1.0040 -2.7027 0.5158 29 1 2.7217 -3.1693 0.5158 30 1 0.6820 -4.9332 0.2084 31 1 2.1259 -5.8507 -0.3190 32 1 -0.7490 -6.0641 -1.3688 33 1 0.3650 -7.3867 -0.8850 34 1 1.8067 -8.2233 -2.6806 35 1 -0.8125 -9.7781 -2.7081 36 1 2.2599 -4.9168 -3.5370 37 1 0.5447 -4.4202 -3.5516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:13 Heat of formation + Delta-G solvation = -25.580653 kcal Electronic energy + Delta-G solvation = -24141.275864 eV Core-core repulsion = 20334.177986 eV Total energy + Delta-G solvation = -3807.097878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.16224 -39.61735 -37.51951 -37.27901 -35.38699 -34.39208 -32.53355 -32.26574 -30.16497 -29.12061 -28.75635 -27.96353 -25.10718 -22.79231 -21.93595 -21.57921 -19.82843 -18.89572 -17.98739 -17.76942 -17.31288 -16.60222 -15.91906 -15.16180 -15.12156 -14.96164 -14.28632 -13.99218 -13.60481 -13.50931 -13.26007 -13.01061 -12.81966 -12.62875 -12.51925 -12.20677 -12.07300 -11.90681 -11.57565 -11.44994 -11.40911 -11.03027 -10.95747 -10.68431 -10.52795 -10.19101 -10.13158 -9.64391 -9.44599 -9.21279 -8.72674 -8.29124 -8.10397 -6.34520 -4.42301 0.91501 1.10944 1.92167 2.92926 3.16741 3.24372 3.27348 3.36964 3.56225 3.89448 4.22434 4.39584 4.67224 4.74172 4.89500 4.96517 5.25342 5.32194 5.40650 5.44509 5.52831 5.53623 5.67726 5.83560 5.91533 5.94333 6.15114 6.39122 6.61699 6.83465 6.89259 7.23704 7.29196 7.67592 7.93281 7.95186 8.00334 8.50617 8.60814 9.24671 9.33633 10.72801 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003342 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.443237 B = 8375.214998 C = 8938.577890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.350 5.350 4 O 0.108 5.892 5 C 0.011 3.989 6 Cl 0.048 6.952 7 C -0.144 4.144 8 C -0.064 4.064 9 C 0.524 3.476 10 O -0.545 6.545 11 N -0.606 5.606 12 C 0.092 3.908 13 C -0.134 4.134 14 C 0.247 3.753 15 O -0.586 6.586 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.124 3.876 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.383 0.617 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 10.351 10.624 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.057 5.057 4 O 0.042 5.958 5 C -0.079 4.079 6 Cl 0.077 6.923 7 C -0.149 4.149 8 C -0.105 4.105 9 C 0.311 3.689 10 O -0.424 6.424 11 N -0.339 5.339 12 C -0.031 4.031 13 C -0.173 4.173 14 C 0.206 3.794 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.129 4.129 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.002 3.998 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.071 12.443 10.080 16.523 hybrid contribution -0.787 -1.854 -0.476 2.070 sum 3.284 10.588 9.604 14.667 Atomic orbital electron populations 1.20236 0.85211 1.04583 1.03493 1.23241 0.99095 0.87701 1.01317 1.73892 0.88497 1.22883 1.20428 1.84880 1.22142 1.20557 1.68254 1.24455 0.90874 0.84896 1.07672 1.98455 1.28220 1.68977 1.96671 1.20163 0.90088 0.96936 1.07735 1.19972 1.04770 0.89217 0.96493 1.19826 0.77743 0.80962 0.90385 1.90699 1.51105 1.54436 1.46119 1.48627 1.66548 1.08972 1.09795 1.22571 0.99773 0.89827 0.90902 1.23292 0.97702 0.97732 0.98524 1.19453 0.83816 0.84503 0.91579 1.86122 1.36057 1.22572 1.94724 1.21526 1.21586 1.01032 1.13302 0.91763 1.24979 0.96457 0.96066 0.95443 1.69688 1.43622 1.08373 1.31839 0.86421 0.80870 0.78539 0.81207 1.20369 1.21028 1.19708 1.22074 1.00832 0.94159 0.82706 0.89737 0.90059 0.89545 0.87039 0.87372 0.92038 0.91719 0.91400 0.89291 0.76651 0.92171 0.92086 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.39 36.00 0.37 -0.41 16 2 C 0.05 0.60 7.32 -82.12 -0.60 0.00 16 3 N -0.35 -5.03 12.07 33.43 0.40 -4.62 16 4 O 0.11 1.51 11.20 17.11 0.19 1.70 16 5 C 0.01 0.15 8.12 29.82 0.24 0.39 16 6 Cl 0.05 0.56 29.23 -51.86 -1.52 -0.95 16 7 C -0.14 -1.94 4.82 -104.38 -0.50 -2.44 16 8 C -0.06 -0.81 5.11 -29.04 -0.15 -0.95 16 9 C 0.52 9.06 7.84 -10.98 -0.09 8.97 16 10 O -0.55 -11.41 16.36 5.56 0.09 -11.32 16 11 N -0.61 -11.10 3.33 -170.53 -0.57 -11.67 16 12 C 0.09 1.49 6.68 -2.53 -0.02 1.48 16 13 C -0.13 -2.68 5.48 -24.58 -0.13 -2.82 16 14 C 0.25 5.67 0.85 -89.94 -0.08 5.59 16 15 O -0.59 -14.09 13.09 -35.23 -0.46 -14.55 16 16 C -0.54 -13.54 8.21 -34.44 -0.28 -13.82 16 17 H 0.06 1.64 7.57 -52.49 -0.40 1.24 16 18 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 19 N -0.90 -22.11 10.66 55.43 0.59 -21.52 16 20 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 24 C 0.12 2.67 6.22 -3.07 -0.02 2.65 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.11 1.10 7.85 -51.93 -0.41 0.69 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.79 7.48 -51.93 -0.39 0.40 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.40 8.04 -51.94 -0.42 0.98 16 33 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 34 H 0.38 9.23 7.41 45.56 0.34 9.57 16 35 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 36 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 37 H 0.07 1.60 7.66 -51.93 -0.40 1.21 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -28.64 333.74 -6.34 -34.97 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.73 Total: 7.92 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.35 Total: 0.36 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.43 Total: -37.81 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.18 Total: -24.17 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -1.52 Total: -0.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.64 -6.34 -34.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.392 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds