Wall clock time and date at job start Tue Mar 31 2020 10:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30213 * 126.78993 * 2 1 4 4 O 1.20912 * 111.64759 * 179.97438 * 3 2 1 5 5 C 1.34066 * 111.55451 * 359.76155 * 4 3 2 6 6 Cl 1.73600 * 126.79822 * 180.25765 * 5 4 3 7 7 C 1.35680 * 106.40299 * 0.38036 * 5 4 3 8 8 C 1.50703 * 128.01116 * 179.91575 * 7 5 4 9 9 C 1.50695 * 109.46828 * 269.67684 * 8 7 5 10 10 O 1.21282 * 120.00475 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.47423 * 125.64558 * 359.97011 * 11 9 8 13 13 C 1.54913 * 104.83089 * 155.90580 * 12 11 9 14 14 C 1.55160 * 101.57624 * 37.01185 * 13 12 11 15 15 O 1.42897 * 110.72162 * 83.04075 * 14 13 12 16 16 C 1.50702 * 110.71656 * 206.13323 * 14 13 12 17 17 H 1.08002 * 120.00299 * 118.55159 * 16 14 13 18 18 C 1.37884 * 119.99942 * 298.26718 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47020 * 125.64951 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.47046 * 270.02673 * 1 2 3 26 26 H 1.09002 * 109.47347 * 30.02936 * 1 2 3 27 27 H 1.09006 * 109.47276 * 150.02961 * 1 2 3 28 28 H 1.09000 * 109.46824 * 149.67232 * 8 7 5 29 29 H 1.08997 * 109.47179 * 29.67671 * 8 7 5 30 30 H 1.09003 * 110.36676 * 37.07285 * 12 11 9 31 31 H 1.08990 * 110.36997 * 274.74671 * 12 11 9 32 32 H 1.08989 * 111.00550 * 278.93903 * 13 12 11 33 33 H 1.08995 * 111.00094 * 155.08083 * 13 12 11 34 34 H 0.96698 * 114.00670 * 63.83578 * 15 14 13 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.88085 * 61.60181 * 24 11 9 37 37 H 1.09002 * 109.87937 * 300.44137 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4539 0.7270 0.0005 5 6 3.6037 -0.6053 0.0061 6 17 5.1012 -1.4834 0.0150 7 6 2.3530 -1.1314 0.0006 8 6 1.9580 -2.5858 0.0017 9 6 1.8262 -3.0715 -1.4187 10 8 2.0322 -2.3115 -2.3411 11 7 1.4783 -4.3503 -1.6641 12 6 1.1997 -5.3761 -0.6425 13 6 0.2859 -6.4055 -1.3531 14 6 0.8880 -6.4214 -2.7831 15 8 2.0176 -7.2943 -2.8464 16 6 -0.1528 -6.8253 -3.7953 17 1 -0.4345 -6.1417 -4.5825 18 6 -0.7413 -8.0700 -3.7199 19 7 -0.3982 -8.9025 -2.7614 20 14 -2.0258 -8.5736 -4.9791 21 1 -1.3586 -9.2331 -6.1303 22 1 -2.9862 -9.5191 -4.3556 23 1 -2.7538 -7.3690 -5.4526 24 6 1.3150 -4.9537 -2.9948 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8903 -0.5134 28 1 1.0040 -2.7027 0.5158 29 1 2.7217 -3.1693 0.5158 30 1 0.6820 -4.9332 0.2084 31 1 2.1259 -5.8507 -0.3190 32 1 -0.7490 -6.0641 -1.3688 33 1 0.3650 -7.3867 -0.8850 34 1 1.8067 -8.2233 -2.6806 35 1 -0.8125 -9.7781 -2.7081 36 1 2.2599 -4.9168 -3.5370 37 1 0.5447 -4.4202 -3.5516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:12 Heat of formation + Delta-G solvation = -44.668982 kcal Electronic energy + Delta-G solvation = -24142.103596 eV Core-core repulsion = 20334.177986 eV Total energy + Delta-G solvation = -3807.925611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.16450 -41.07013 -39.05833 -38.29322 -36.42593 -36.06480 -34.18137 -33.56634 -31.66026 -30.37664 -29.84124 -29.31809 -26.85687 -24.18758 -23.12517 -22.56370 -21.51352 -20.27947 -19.18355 -18.98371 -18.79368 -18.00751 -17.17738 -16.90177 -16.49868 -16.29417 -15.99166 -15.30428 -14.89987 -14.71755 -14.27431 -14.13868 -13.96240 -13.83240 -13.67492 -13.53483 -13.33912 -13.23622 -13.11535 -13.07127 -12.86448 -12.66626 -12.39018 -12.26001 -11.98760 -11.94366 -11.25716 -11.18601 -10.88827 -10.62223 -10.30984 -10.11177 -9.60657 -8.23423 -6.37447 -0.07347 0.10299 0.92764 1.42035 1.46174 1.53806 1.60016 2.07054 2.40800 2.49129 2.96308 3.02350 3.44145 3.56268 3.72948 3.82765 3.95123 4.05073 4.32735 4.39201 4.44445 4.54799 4.60778 4.63604 4.65520 4.73384 4.76147 4.96036 5.13531 5.22191 5.27495 5.50942 5.59633 5.79559 6.09984 6.59748 6.67498 6.93372 7.12876 7.33200 7.43028 8.82081 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003342 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.443237 B = 8375.214998 C = 8938.577890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.043 3.957 3 N -0.371 5.371 4 O 0.096 5.904 5 C 0.007 3.993 6 Cl 0.061 6.939 7 C -0.157 4.157 8 C -0.054 4.054 9 C 0.523 3.477 10 O -0.587 6.587 11 N -0.609 5.609 12 C 0.100 3.900 13 C -0.125 4.125 14 C 0.233 3.767 15 O -0.594 6.594 16 C -0.564 4.564 17 H 0.049 0.951 18 C 0.041 3.959 19 N -0.903 5.903 20 Si 0.954 3.046 21 H -0.280 1.280 22 H -0.276 1.276 23 H -0.275 1.275 24 C 0.131 3.869 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.380 0.620 35 H 0.272 0.728 36 H 0.039 0.961 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 10.287 12.505 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 N -0.081 5.081 4 O 0.033 5.967 5 C -0.083 4.083 6 Cl 0.089 6.911 7 C -0.162 4.162 8 C -0.093 4.093 9 C 0.313 3.687 10 O -0.468 6.468 11 N -0.341 5.341 12 C -0.021 4.021 13 C -0.164 4.164 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.603 4.603 17 H 0.067 0.933 18 C -0.161 4.161 19 N -0.542 5.542 20 Si 0.780 3.220 21 H -0.206 1.206 22 H -0.201 1.201 23 H -0.200 1.200 24 C 0.008 3.992 25 H 0.132 0.868 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.408 12.374 11.992 17.565 hybrid contribution -0.537 -1.839 -1.113 2.216 sum 2.871 10.535 10.878 15.413 Atomic orbital electron populations 1.20398 0.83145 1.04657 1.05394 1.23797 1.00473 0.87331 0.99942 1.73889 0.88756 1.23688 1.21741 1.84854 1.22247 1.20948 1.68659 1.24732 0.91656 0.84889 1.07044 1.98458 1.27506 1.68546 1.96562 1.20364 0.90105 0.97489 1.08227 1.20040 1.07575 0.88625 0.93085 1.20673 0.76120 0.79861 0.92076 1.90685 1.52704 1.55354 1.48058 1.48661 1.66924 1.09841 1.08683 1.22638 0.99873 0.88568 0.91058 1.23062 0.97873 0.98595 0.96849 1.19601 0.83262 0.84678 0.93104 1.86107 1.36704 1.22504 1.94933 1.21743 1.22948 1.01531 1.14043 0.93318 1.25514 0.97770 0.95938 0.96837 1.69735 1.43818 1.08420 1.32219 0.85618 0.79035 0.78014 0.79295 1.20617 1.20115 1.20013 1.21740 0.99088 0.93767 0.84628 0.86820 0.89895 0.89521 0.83360 0.84930 0.87157 0.90655 0.92236 0.90244 0.77003 0.91881 0.94237 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.39 71.23 0.74 -0.63 16 2 C 0.04 1.06 7.32 43.55 0.32 1.38 16 3 N -0.37 -10.30 12.07 -49.44 -0.60 -10.89 16 4 O 0.10 2.62 11.20 71.40 0.80 3.42 16 5 C 0.01 0.18 8.12 67.23 0.55 0.72 16 6 Cl 0.06 1.32 29.23 -2.72 -0.08 1.24 16 7 C -0.16 -3.86 4.82 -19.71 -0.10 -3.95 16 8 C -0.05 -1.15 5.11 29.10 0.15 -1.00 16 9 C 0.52 17.07 7.84 87.65 0.69 17.76 16 10 O -0.59 -24.29 16.36 -3.04 -0.05 -24.34 16 11 N -0.61 -21.27 3.33 -811.81 -2.70 -23.97 16 12 C 0.10 2.94 6.68 86.86 0.58 3.52 16 13 C -0.13 -4.85 5.48 31.99 0.18 -4.68 16 14 C 0.23 10.78 0.85 -10.35 -0.01 10.78 16 15 O -0.59 -28.78 13.09 -148.98 -1.95 -30.73 16 16 C -0.56 -28.94 8.21 25.60 0.21 -28.73 16 17 H 0.05 2.57 7.57 -2.91 -0.02 2.55 16 18 C 0.04 2.04 5.27 84.66 0.45 2.48 16 19 N -0.90 -44.12 10.66 21.45 0.23 -43.90 16 20 Si 0.95 40.19 29.54 68.60 2.03 42.21 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.13 5.72 6.22 86.73 0.54 6.26 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.15 2.13 7.85 -2.39 -0.02 2.11 16 29 H 0.13 2.25 8.14 -2.39 -0.02 2.24 16 30 H 0.11 2.22 7.48 -2.39 -0.02 2.21 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 33 H 0.08 3.23 7.55 -2.39 -0.02 3.21 16 34 H 0.38 18.47 7.41 -74.06 -0.55 17.92 16 35 H 0.27 12.66 8.31 -92.70 -0.77 11.89 16 36 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.06 2.64 7.66 -2.39 -0.02 2.62 16 Total: -1.00 -62.92 333.74 2.54 -60.39 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.57 Total: 22.67 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 4.29 Total: 3.90 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -3.07 Total: -78.76 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -1.20 Total: -51.65 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 17 Polarization: 1.32 SS G_CDS: -0.08 Total: 1.24 kcal Total: -62.92 2.54 -60.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.718 kcal (2) G-P(sol) polarization free energy of solvation -62.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds