Wall clock time and date at job start Tue Mar 31 2020 10:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 116.99925 * 2 1 4 4 C 1.38539 * 120.03326 * 359.73002 * 3 2 1 5 5 C 1.38794 * 119.95399 * 179.67594 * 4 3 2 6 6 N 1.40135 * 119.99581 * 180.31816 * 5 4 3 7 7 C 1.34779 * 120.00059 * 213.60591 * 6 5 4 8 8 O 1.21591 * 119.99879 * 5.32108 * 7 6 5 9 9 N 1.34773 * 119.99741 * 185.31585 * 7 6 5 10 10 C 1.46500 * 119.99805 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47042 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00358 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99981 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99964 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47317 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47257 * 119.99720 * 15 13 11 18 18 H 1.48504 * 109.47065 * 239.99587 * 15 13 11 19 19 C 1.38841 * 120.00999 * 0.61900 * 5 4 3 20 20 C 1.38273 * 120.06537 * 359.68055 * 19 5 4 21 21 Cl 1.73597 * 119.97837 * 180.02562 * 20 19 5 22 22 C 1.38654 * 120.04796 * 359.97438 * 20 19 5 23 23 O 1.36097 * 120.01027 * 180.02562 * 22 20 19 24 24 C 1.42905 * 116.99517 * 270.02285 * 23 22 20 25 25 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47431 * 59.99388 * 1 2 3 27 27 H 1.09006 * 109.46804 * 299.99710 * 1 2 3 28 28 H 1.07999 * 120.02318 * 359.97438 * 4 3 2 29 29 H 0.97001 * 120.00051 * 33.60536 * 6 5 4 30 30 H 0.96996 * 120.00315 * 0.02562 * 9 7 6 31 31 H 1.09007 * 109.46508 * 299.99658 * 10 9 7 32 32 H 1.08996 * 109.47471 * 59.99691 * 10 9 7 33 33 H 0.96998 * 120.00198 * 180.02562 * 14 13 11 34 34 H 1.08006 * 119.96372 * 179.70076 * 19 5 4 35 35 H 1.08998 * 109.47601 * 59.99608 * 24 23 22 36 36 H 1.08997 * 109.47100 * 179.97438 * 24 23 22 37 37 H 1.09001 * 109.47075 * 299.99375 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2925 2.3740 -0.0057 5 6 1.9243 3.6098 0.0012 6 7 1.1625 4.7860 0.0022 7 6 1.6148 5.8823 -0.6382 8 8 2.6349 5.8239 -1.2973 9 7 0.9361 7.0433 -0.5482 10 6 1.4273 8.2348 -1.2448 11 6 0.4950 9.3895 -0.9835 12 1 -0.3766 9.2498 -0.3612 13 6 0.7546 10.6245 -1.5389 14 7 1.8162 10.7948 -2.2963 15 14 -0.4007 12.0560 -1.2145 16 1 -1.5116 11.6067 -0.3374 17 1 0.3453 13.1527 -0.5466 18 1 -0.9547 12.5467 -2.5020 19 6 3.3109 3.6809 0.0006 20 6 4.0639 2.5212 0.0000 21 17 5.7975 2.6127 0.0000 22 6 3.4355 1.2853 0.0004 23 8 4.1774 0.1443 0.0003 24 6 4.5310 -0.3994 -1.2730 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 0.2139 2.3185 -0.0105 29 1 0.3098 4.8112 0.4638 30 1 0.1225 7.0899 -0.0222 31 1 2.4242 8.4835 -0.8804 32 1 1.4708 8.0375 -2.3159 33 1 1.9990 11.6637 -2.6868 34 1 3.8017 4.6429 0.0011 35 1 5.1173 0.3314 -1.8301 36 1 5.1205 -1.3050 -1.1304 37 1 3.6252 -0.6391 -1.8300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844778865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:42 Heat of formation + Delta-G solvation = -78.163184 kcal Electronic energy + Delta-G solvation = -23296.680579 eV Core-core repulsion = 19487.302551 eV Total energy + Delta-G solvation = -3809.378028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89179 -39.67447 -38.32299 -37.21163 -36.41347 -34.35135 -33.99868 -32.38442 -30.25436 -29.57281 -27.65114 -27.33785 -26.26883 -23.35088 -22.68652 -22.01682 -20.45827 -18.69044 -18.50878 -17.70097 -16.88616 -16.36912 -16.22128 -15.89876 -15.32201 -15.14052 -14.96978 -14.79406 -14.54244 -14.22643 -13.69519 -13.41236 -13.24746 -13.03119 -12.31894 -12.10650 -12.07029 -11.99986 -11.97612 -11.63069 -11.25013 -11.02494 -11.00219 -10.95709 -10.38340 -10.07347 -9.82516 -9.57019 -9.44810 -8.83231 -8.61457 -8.13586 -7.80621 -6.22745 -4.30128 0.86223 1.16612 1.95719 2.90055 3.06479 3.18685 3.19754 3.27435 3.30032 3.68819 3.83060 4.26045 4.69689 4.77433 4.79144 4.88544 5.02050 5.06941 5.13777 5.13888 5.22869 5.26411 5.32134 5.50464 5.57374 5.99116 6.01464 6.24683 6.71609 6.87178 6.91109 7.27917 7.40423 7.43868 7.44397 7.71478 7.90884 8.57488 8.74130 9.05185 9.36757 10.87371 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002888 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.786021 B = 9692.654620 C =10755.972392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.144 3.856 4 C -0.232 4.232 5 C 0.234 3.766 6 N -0.692 5.692 7 C 0.689 3.311 8 O -0.576 6.576 9 N -0.718 5.718 10 C 0.265 3.735 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.883 5.883 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.138 4.138 20 C 0.006 3.994 21 Cl -0.046 7.046 22 C 0.040 3.960 23 O -0.315 6.315 24 C 0.033 3.967 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.141 0.859 29 H 0.407 0.593 30 H 0.389 0.611 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.158 0.842 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -21.702 5.582 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.097 3.903 4 C -0.254 4.254 5 C 0.135 3.865 6 N -0.340 5.340 7 C 0.389 3.611 8 O -0.453 6.453 9 N -0.370 5.370 10 C 0.144 3.856 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.521 5.521 15 Si 0.732 3.268 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.160 4.160 20 C -0.023 4.023 21 Cl -0.017 7.017 22 C -0.006 4.006 23 O -0.231 6.231 24 C -0.061 4.061 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.242 0.758 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.557 -21.721 4.979 22.291 hybrid contribution -1.606 1.152 0.284 1.997 sum -2.163 -20.568 5.263 21.341 Atomic orbital electron populations 1.23133 0.78250 1.04111 1.01636 1.86162 1.21328 1.25575 1.88411 1.18707 0.90548 0.84537 0.96540 1.20861 1.00487 0.90294 1.13786 1.16995 0.89890 0.84869 0.94703 1.42919 1.24111 1.09995 1.57007 1.16175 0.84232 0.80364 0.80350 1.90928 1.25457 1.83951 1.44959 1.45804 1.28236 1.09308 1.53620 1.19099 0.95424 0.78789 0.92273 1.21221 1.10148 0.94439 1.32496 0.91812 1.24944 0.95538 0.98828 0.94656 1.69979 1.26023 1.24326 1.31733 0.86343 0.80470 0.81846 0.78126 1.19652 1.20739 1.20771 1.21004 0.92178 0.98669 1.04121 1.20718 0.85735 0.92899 1.02901 1.98371 1.08244 1.98530 1.96584 1.17388 0.86499 0.85664 1.11069 1.86152 1.70121 1.37822 1.28976 1.23005 0.99717 0.98544 0.84875 0.88055 0.92421 0.92381 0.84177 0.75788 0.77798 0.95323 0.95397 0.92392 0.82487 0.93531 0.88953 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.37 10.28 -34.34 -0.35 -3.72 16 3 C 0.14 1.82 6.70 -39.15 -0.26 1.55 16 4 C -0.23 -2.72 8.95 -39.26 -0.35 -3.08 16 5 C 0.23 3.34 6.28 -83.63 -0.53 2.81 16 6 N -0.69 -9.77 5.35 -14.20 -0.08 -9.84 16 7 C 0.69 13.23 8.30 -86.92 -0.72 12.51 16 8 O -0.58 -13.40 14.03 5.29 0.07 -13.33 16 9 N -0.72 -14.25 5.55 -66.41 -0.37 -14.62 16 10 C 0.26 6.75 5.43 -5.20 -0.03 6.72 16 11 C -0.54 -14.26 9.28 -34.44 -0.32 -14.58 16 12 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 15 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.14 -2.20 8.43 -39.35 -0.33 -2.53 16 20 C 0.01 0.08 6.33 -39.42 -0.25 -0.17 16 21 Cl -0.05 -0.65 28.49 -51.86 -1.48 -2.13 16 22 C 0.04 0.56 5.73 -39.11 -0.22 0.34 16 23 O -0.31 -4.23 9.65 -34.67 -0.33 -4.57 16 24 C 0.03 0.34 11.13 101.05 1.13 1.47 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 27 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 28 H 0.14 1.22 6.29 -52.49 -0.33 0.89 16 29 H 0.41 4.14 8.84 -40.82 -0.36 3.78 16 30 H 0.39 6.42 8.34 -40.82 -0.34 6.08 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.16 2.85 6.41 -52.48 -0.34 2.52 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -32.67 339.28 -6.93 -39.61 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.23 Total: 5.05 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.99 Total: 7.85 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.29 Total: -49.18 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.61 Total: -21.62 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.67 -6.93 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844778865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.556 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds