Wall clock time and date at job start Tue Mar 31 2020 10:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 116.99925 * 2 1 4 4 C 1.38539 * 120.03326 * 359.73002 * 3 2 1 5 5 C 1.38794 * 119.95399 * 179.67594 * 4 3 2 6 6 N 1.40135 * 119.99581 * 180.31816 * 5 4 3 7 7 C 1.34779 * 120.00059 * 213.60591 * 6 5 4 8 8 O 1.21591 * 119.99879 * 5.32108 * 7 6 5 9 9 N 1.34773 * 119.99741 * 185.31585 * 7 6 5 10 10 C 1.46500 * 119.99805 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47042 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00358 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99981 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99964 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47317 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47257 * 119.99720 * 15 13 11 18 18 H 1.48504 * 109.47065 * 239.99587 * 15 13 11 19 19 C 1.38841 * 120.00999 * 0.61900 * 5 4 3 20 20 C 1.38273 * 120.06537 * 359.68055 * 19 5 4 21 21 Cl 1.73597 * 119.97837 * 180.02562 * 20 19 5 22 22 C 1.38654 * 120.04796 * 359.97438 * 20 19 5 23 23 O 1.36097 * 120.01027 * 180.02562 * 22 20 19 24 24 C 1.42905 * 116.99517 * 270.02285 * 23 22 20 25 25 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47431 * 59.99388 * 1 2 3 27 27 H 1.09006 * 109.46804 * 299.99710 * 1 2 3 28 28 H 1.07999 * 120.02318 * 359.97438 * 4 3 2 29 29 H 0.97001 * 120.00051 * 33.60536 * 6 5 4 30 30 H 0.96996 * 120.00315 * 0.02562 * 9 7 6 31 31 H 1.09007 * 109.46508 * 299.99658 * 10 9 7 32 32 H 1.08996 * 109.47471 * 59.99691 * 10 9 7 33 33 H 0.96998 * 120.00198 * 180.02562 * 14 13 11 34 34 H 1.08006 * 119.96372 * 179.70076 * 19 5 4 35 35 H 1.08998 * 109.47601 * 59.99608 * 24 23 22 36 36 H 1.08997 * 109.47100 * 179.97438 * 24 23 22 37 37 H 1.09001 * 109.47075 * 299.99375 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2925 2.3740 -0.0057 5 6 1.9243 3.6098 0.0012 6 7 1.1625 4.7860 0.0022 7 6 1.6148 5.8823 -0.6382 8 8 2.6349 5.8239 -1.2973 9 7 0.9361 7.0433 -0.5482 10 6 1.4273 8.2348 -1.2448 11 6 0.4950 9.3895 -0.9835 12 1 -0.3766 9.2498 -0.3612 13 6 0.7546 10.6245 -1.5389 14 7 1.8162 10.7948 -2.2963 15 14 -0.4007 12.0560 -1.2145 16 1 -1.5116 11.6067 -0.3374 17 1 0.3453 13.1527 -0.5466 18 1 -0.9547 12.5467 -2.5020 19 6 3.3109 3.6809 0.0006 20 6 4.0639 2.5212 0.0000 21 17 5.7975 2.6127 0.0000 22 6 3.4355 1.2853 0.0004 23 8 4.1774 0.1443 0.0003 24 6 4.5310 -0.3994 -1.2730 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 0.2139 2.3185 -0.0105 29 1 0.3098 4.8112 0.4638 30 1 0.1225 7.0899 -0.0222 31 1 2.4242 8.4835 -0.8804 32 1 1.4708 8.0375 -2.3159 33 1 1.9990 11.6637 -2.6868 34 1 3.8017 4.6429 0.0011 35 1 5.1173 0.3314 -1.8301 36 1 5.1205 -1.3050 -1.1304 37 1 3.6252 -0.6391 -1.8300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844778865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:42 Heat of formation + Delta-G solvation = -101.814909 kcal Electronic energy + Delta-G solvation = -23297.706195 eV Core-core repulsion = 19487.302551 eV Total energy + Delta-G solvation = -3810.403644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01644 -40.99191 -39.23273 -38.38547 -37.54936 -36.17214 -35.33283 -34.28760 -31.29488 -30.70302 -29.10785 -28.29489 -27.33912 -25.03447 -23.79357 -23.35969 -21.94304 -20.05076 -19.72665 -18.77998 -18.24991 -17.71743 -17.35868 -17.06322 -16.74286 -16.43938 -16.13075 -16.03714 -15.69119 -15.53242 -14.99520 -14.84779 -14.30518 -14.15526 -14.05100 -13.96970 -13.31726 -12.88736 -12.87245 -12.76724 -12.71940 -12.46223 -12.23808 -12.21254 -12.08649 -11.44965 -11.36823 -11.03298 -10.88567 -10.81806 -9.94412 -9.60886 -9.01030 -8.28316 -6.44399 -0.21193 0.08767 0.87346 1.44175 1.45895 1.55287 1.61176 1.92011 2.26533 2.37790 2.40087 2.77715 3.07526 3.31744 3.85955 3.92874 3.99227 4.09845 4.29888 4.44283 4.47052 4.48150 4.48527 4.77850 4.79024 4.87684 5.00188 5.05570 5.10504 5.26260 5.44627 5.53773 5.60953 5.82747 6.02358 6.11392 6.48435 6.66680 7.11770 7.25515 7.53924 8.83985 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002888 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.786021 B = 9692.654620 C =10755.972392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.148 3.852 4 C -0.209 4.209 5 C 0.217 3.783 6 N -0.668 5.668 7 C 0.691 3.309 8 O -0.621 6.621 9 N -0.711 5.711 10 C 0.284 3.716 11 C -0.553 4.553 12 H 0.086 0.914 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.252 1.252 17 H -0.281 1.281 18 H -0.280 1.280 19 C -0.159 4.159 20 C -0.005 4.005 21 Cl -0.049 7.049 22 C 0.036 3.964 23 O -0.327 6.327 24 C 0.029 3.971 25 H 0.124 0.876 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.179 0.821 29 H 0.429 0.571 30 H 0.409 0.591 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.268 0.732 34 H 0.126 0.874 35 H 0.041 0.959 36 H 0.117 0.883 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -23.126 6.672 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.100 3.900 4 C -0.230 4.230 5 C 0.120 3.880 6 N -0.317 5.317 7 C 0.392 3.608 8 O -0.501 6.501 9 N -0.364 5.364 10 C 0.161 3.839 11 C -0.591 4.591 12 H 0.104 0.896 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.807 3.193 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.181 4.181 20 C -0.034 4.034 21 Cl -0.020 7.020 22 C -0.010 4.010 23 O -0.244 6.244 24 C -0.065 4.065 25 H 0.142 0.858 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.196 0.804 29 H 0.269 0.731 30 H 0.245 0.755 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.606 -23.218 6.124 24.282 hybrid contribution -0.649 1.375 -0.058 1.522 sum -4.255 -21.843 6.066 23.066 Atomic orbital electron populations 1.23525 0.75721 1.06193 1.02881 1.86174 1.23877 1.24526 1.87905 1.18724 0.90168 0.85514 0.95585 1.21074 1.02179 0.88536 1.11241 1.17097 0.89329 0.85547 0.96013 1.42439 1.24737 1.08485 1.56085 1.16238 0.83416 0.81089 0.80094 1.90911 1.27457 1.84801 1.46914 1.45309 1.29080 1.08268 1.53750 1.18498 0.94046 0.81004 0.90390 1.21619 1.10570 0.94497 1.32408 0.89578 1.26032 0.97160 1.02162 0.94177 1.70140 1.28332 1.25239 1.33159 0.85120 0.78404 0.77574 0.78163 1.17501 1.20685 1.20598 1.20831 0.93344 0.97759 1.06146 1.20753 0.85702 0.93137 1.03761 1.98358 1.08439 1.98567 1.96656 1.17557 0.87462 0.85461 1.10550 1.86115 1.70239 1.37444 1.30605 1.23196 1.00279 0.99204 0.83802 0.85809 0.91372 0.90785 0.80402 0.73105 0.75487 0.99219 0.99163 0.92269 0.85574 0.94037 0.86458 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.31 -6.00 10.28 -79.46 -0.82 -6.82 16 3 C 0.15 3.41 6.70 22.55 0.15 3.56 16 4 C -0.21 -4.32 8.95 22.47 0.20 -4.12 16 5 C 0.22 6.00 6.28 38.09 0.24 6.24 16 6 N -0.67 -18.01 5.35 -317.10 -1.70 -19.71 16 7 C 0.69 26.92 8.30 179.05 1.49 28.40 16 8 O -0.62 -30.31 14.03 -4.00 -0.06 -30.36 16 9 N -0.71 -28.34 5.55 -482.30 -2.68 -31.01 16 10 C 0.28 15.01 5.43 85.63 0.46 15.48 16 11 C -0.55 -28.94 9.28 25.60 0.24 -28.70 16 12 H 0.09 4.03 7.60 -2.91 -0.02 4.00 16 13 C 0.00 0.24 5.46 84.66 0.46 0.70 16 14 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 15 Si 0.98 41.22 29.54 68.60 2.03 43.25 16 16 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.16 -5.23 8.43 22.42 0.19 -5.04 16 20 C -0.01 -0.16 6.33 22.38 0.14 -0.02 16 21 Cl -0.05 -1.43 28.49 -2.72 -0.08 -1.51 16 22 C 0.04 0.98 5.73 22.58 0.13 1.11 16 23 O -0.33 -8.48 9.65 -80.67 -0.78 -9.26 16 24 C 0.03 0.57 11.13 113.37 1.26 1.83 16 25 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 27 H 0.07 0.50 7.67 -2.38 -0.02 0.48 16 28 H 0.18 2.25 6.29 -2.91 -0.02 2.23 16 29 H 0.43 7.53 8.84 -92.71 -0.82 6.71 16 30 H 0.41 12.88 8.34 -92.71 -0.77 12.11 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.13 4.94 6.41 -2.91 -0.02 4.92 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.38 339.28 1.83 -72.55 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.45 Total: 17.01 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 6.08 Total: 20.65 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.09 Total: -105.51 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.65 Total: -46.45 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -74.38 1.83 -72.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844778865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.263 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds