Wall clock time and date at job start Tue Mar 31 2020 10:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46988 * 2 1 4 4 C 1.35682 * 125.68508 * 264.50799 * 3 2 1 5 5 C 1.35551 * 108.86649 * 180.26858 * 4 3 2 6 6 Cl 1.73604 * 126.06884 * 179.73535 * 5 4 3 7 7 C 1.39859 * 107.86395 * 359.75645 * 5 4 3 8 8 C 1.37658 * 125.68072 * 84.35710 * 3 2 1 9 9 C 1.46539 * 126.23040 * 359.97438 * 8 3 2 10 10 O 1.21736 * 120.00093 * 352.58583 * 9 8 3 11 11 N 1.34775 * 119.99893 * 172.57877 * 9 8 3 12 12 C 1.36873 * 120.00106 * 2.69187 * 11 9 8 13 13 H 1.08002 * 120.00213 * 305.32530 * 12 11 9 14 14 C 1.39008 * 120.00070 * 125.33191 * 12 11 9 15 15 N 1.31396 * 120.00179 * 182.12495 * 14 12 11 16 16 Si 1.86804 * 120.00084 * 2.11600 * 14 12 11 17 17 H 1.48502 * 109.46526 * 94.08983 * 16 14 12 18 18 H 1.48500 * 109.47512 * 214.08706 * 16 14 12 19 19 H 1.48492 * 109.46979 * 334.09337 * 16 14 12 20 20 C 1.46503 * 119.99941 * 182.68954 * 11 9 8 21 21 C 1.50697 * 109.47085 * 84.62447 * 20 11 9 22 22 O 1.20821 * 120.00162 * 0.02562 * 21 20 11 23 23 O 1.34230 * 119.99720 * 179.97438 * 21 20 11 24 24 C 1.45203 * 116.99808 * 179.97438 * 23 21 20 25 25 H 1.08993 * 109.47387 * 305.00997 * 1 2 3 26 26 H 1.09004 * 109.46918 * 65.01784 * 1 2 3 27 27 H 1.09000 * 109.46918 * 185.00893 * 1 2 3 28 28 H 1.09003 * 109.47161 * 240.00281 * 2 1 3 29 29 H 1.09003 * 109.47233 * 119.99918 * 2 1 3 30 30 H 1.08005 * 125.56593 * 0.02617 * 4 3 2 31 31 H 1.07999 * 126.45243 * 179.97438 * 7 5 4 32 32 H 0.97005 * 120.00269 * 180.02562 * 15 14 12 33 33 H 1.09005 * 109.47163 * 204.62599 * 20 11 9 34 34 H 1.09004 * 109.47111 * 324.62486 * 20 11 9 35 35 H 1.09005 * 109.47387 * 300.00552 * 24 23 21 36 36 H 1.09009 * 109.47077 * 60.00099 * 24 23 21 37 37 H 1.08995 * 109.47278 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3816 2.0922 -1.0970 5 6 2.7843 3.3261 -0.7060 6 17 3.3486 4.5949 -1.7479 7 6 2.6650 3.3953 0.6857 8 6 2.1823 2.1748 1.1128 9 6 1.9010 1.7917 2.4989 10 8 1.3551 0.7302 2.7382 11 7 2.2467 2.6144 3.5089 12 6 2.8104 3.8318 3.2375 13 1 3.6952 3.8919 2.6209 14 6 2.2442 4.9909 3.7554 15 7 2.7606 6.1627 3.4609 16 14 0.7491 4.8827 4.8701 17 1 1.1894 4.8645 6.2882 18 1 -0.1270 6.0592 4.6389 19 1 -0.0033 3.6383 4.5694 20 6 2.0192 2.2057 4.8972 21 6 3.1762 1.3631 5.3688 22 8 4.0966 1.1285 4.6221 23 8 3.1846 0.8742 6.6189 24 6 4.3307 0.0704 7.0045 25 1 -0.3634 0.5895 0.8416 26 1 -0.3633 0.4340 -0.9316 27 1 -0.3633 -1.0238 0.0897 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.3578 1.7325 -2.1151 31 1 2.9057 4.2439 1.3090 32 1 2.3657 6.9715 3.8226 33 1 1.9339 3.0911 5.5273 34 1 1.0984 1.6257 4.9590 35 1 4.4024 -0.7981 6.3498 36 1 5.2389 0.6670 6.9173 37 1 4.2118 -0.2607 8.0362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906749808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:06 Heat of formation + Delta-G solvation = -50.850510 kcal Electronic energy + Delta-G solvation = -24908.179645 eV Core-core repulsion = 21099.985983 eV Total energy + Delta-G solvation = -3808.193662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88967 -39.98293 -38.30390 -36.01273 -35.80331 -35.11203 -33.46180 -32.16664 -29.86669 -28.70380 -28.09381 -26.41165 -25.14253 -23.15589 -21.78003 -20.71803 -19.90290 -18.88909 -17.95530 -17.35192 -16.57434 -16.07357 -15.61292 -15.42943 -15.11607 -14.80843 -14.31188 -13.87354 -13.82028 -13.58518 -13.21454 -13.00749 -12.69478 -12.57363 -12.23777 -12.16342 -11.96706 -11.87942 -11.69397 -11.60502 -11.23595 -10.92542 -10.88654 -10.59942 -10.42730 -10.27392 -10.08765 -9.84377 -9.28547 -8.88603 -7.97354 -7.88554 -7.52428 -6.53422 -4.40487 2.13395 2.70529 2.76228 2.97504 2.97771 3.14034 3.15146 3.25250 3.47506 3.99327 4.26099 4.30166 4.79844 4.99359 5.28358 5.29699 5.32419 5.36953 5.38038 5.52223 5.56858 5.70639 5.72087 5.81589 5.91459 5.92769 6.07478 6.36120 6.59418 6.76942 6.88460 7.18776 7.36224 7.66624 7.70335 7.86028 8.14935 8.30302 8.78426 9.06957 9.40686 10.51572 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.006123 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.432038 B = 4571.478393 C = 5725.468873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -0.413 5.413 4 C 0.010 3.990 5 C -0.132 4.132 6 Cl -0.068 7.068 7 C -0.107 4.107 8 C -0.015 4.015 9 C 0.578 3.422 10 O -0.594 6.594 11 N -0.442 5.442 12 C -0.351 4.351 13 H 0.118 0.882 14 C 0.073 3.927 15 N -0.853 5.853 16 Si 0.869 3.131 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.256 1.256 20 C 0.114 3.886 21 C 0.448 3.552 22 O -0.490 6.490 23 O -0.369 6.369 24 C 0.037 3.963 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.280 0.720 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -7.945 -1.889 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.089 5.089 4 C -0.126 4.126 5 C -0.166 4.166 6 Cl -0.040 7.040 7 C -0.132 4.132 8 C -0.127 4.127 9 C 0.370 3.630 10 O -0.480 6.480 11 N -0.162 5.162 12 C -0.478 4.478 13 H 0.135 0.865 14 C -0.136 4.136 15 N -0.487 5.487 16 Si 0.695 3.305 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.180 1.180 20 C -0.011 4.011 21 C 0.289 3.711 22 O -0.375 6.375 23 O -0.286 6.286 24 C -0.058 4.058 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.182 0.818 31 H 0.218 0.782 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.176 -8.596 -1.997 9.089 hybrid contribution -0.301 0.200 0.488 0.607 sum -2.477 -8.396 -1.509 8.883 Atomic orbital electron populations 1.22054 0.94379 1.02654 1.02719 1.21867 0.95777 0.79820 1.04053 1.43902 1.48312 1.11440 1.05199 1.21438 1.07334 0.92129 0.91684 1.20157 1.13319 0.90726 0.92412 1.98272 1.88476 1.50943 1.66308 1.22993 0.99311 0.98886 0.91983 1.19825 1.13205 0.92114 0.87566 1.16951 0.78716 0.83715 0.83602 1.90656 1.46824 1.25180 1.85333 1.42880 1.55874 1.16866 1.00603 1.19263 1.12627 0.79863 1.36079 0.86513 1.25527 0.96692 0.94945 0.96465 1.69609 1.39794 0.97802 1.41457 0.86996 0.83367 0.79257 0.80873 1.19419 1.20600 1.17990 1.21442 0.94561 0.97861 0.87235 1.24796 0.88964 0.78051 0.79308 1.90624 1.36471 1.55352 1.55082 1.86526 1.45748 1.63321 1.32998 1.23143 0.87641 0.94507 1.00478 0.90953 0.92801 0.91310 0.90099 0.88052 0.81818 0.78233 0.90975 0.87738 0.87116 0.92353 0.92166 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.11 37.16 0.38 -1.83 16 2 C 0.11 1.58 6.08 -4.04 -0.02 1.56 16 3 N -0.41 -7.52 2.77 -112.80 -0.31 -7.83 16 4 C 0.01 0.17 11.35 -16.81 -0.19 -0.02 16 5 C -0.13 -2.52 6.66 -39.94 -0.27 -2.79 16 6 Cl -0.07 -1.18 29.30 -51.86 -1.52 -2.70 16 7 C -0.11 -2.35 9.10 -39.05 -0.36 -2.71 16 8 C -0.02 -0.34 6.80 -81.98 -0.56 -0.89 16 9 C 0.58 13.56 7.41 -12.92 -0.10 13.47 16 10 O -0.59 -13.96 13.85 5.16 0.07 -13.89 16 11 N -0.44 -10.44 1.57 -117.63 -0.19 -10.63 16 12 C -0.35 -8.77 6.73 -15.02 -0.10 -8.87 16 13 H 0.12 3.17 6.15 -52.49 -0.32 2.84 16 14 C 0.07 1.81 5.48 -17.45 -0.10 1.72 16 15 N -0.85 -22.12 13.96 55.50 0.77 -21.34 16 16 Si 0.87 18.77 24.82 -169.99 -4.22 14.55 16 17 H -0.27 -5.51 7.06 56.52 0.40 -5.11 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.26 -5.44 6.50 56.52 0.37 -5.08 16 20 C 0.11 2.41 4.08 -5.19 -0.02 2.39 16 21 C 0.45 9.41 7.99 36.00 0.29 9.69 16 22 O -0.49 -11.61 16.06 -18.75 -0.30 -11.91 16 23 O -0.37 -6.51 10.57 -39.26 -0.41 -6.92 16 24 C 0.04 0.50 10.56 101.05 1.07 1.56 16 25 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.10 1.71 6.84 -51.93 -0.36 1.35 16 30 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.20 4.88 4.71 -52.49 -0.25 4.63 16 32 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.11 2.15 4.20 -51.93 -0.22 1.93 16 34 H 0.11 2.19 7.52 -51.93 -0.39 1.80 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.82 8.13 -51.92 -0.42 0.39 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -29.23 328.03 -5.19 -34.43 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.05 Total: 8.02 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 0.02 Total: 13.28 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.28 Total: -39.80 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.64 Total: -32.73 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.22 Total: 14.55 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.52 Total: -2.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.23 -5.19 -34.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906749808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.424 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds