Wall clock time and date at job start Tue Mar 31 2020 10:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46988 * 2 1 4 4 C 1.35682 * 125.68508 * 264.50799 * 3 2 1 5 5 C 1.35551 * 108.86649 * 180.26858 * 4 3 2 6 6 Cl 1.73604 * 126.06884 * 179.73535 * 5 4 3 7 7 C 1.39859 * 107.86395 * 359.75645 * 5 4 3 8 8 C 1.37658 * 125.68072 * 84.35710 * 3 2 1 9 9 C 1.46539 * 126.23040 * 359.97438 * 8 3 2 10 10 O 1.21736 * 120.00093 * 352.58583 * 9 8 3 11 11 N 1.34775 * 119.99893 * 172.57877 * 9 8 3 12 12 C 1.36873 * 120.00106 * 2.69187 * 11 9 8 13 13 H 1.08002 * 120.00213 * 305.32530 * 12 11 9 14 14 C 1.39008 * 120.00070 * 125.33191 * 12 11 9 15 15 N 1.31396 * 120.00179 * 182.12495 * 14 12 11 16 16 Si 1.86804 * 120.00084 * 2.11600 * 14 12 11 17 17 H 1.48502 * 109.46526 * 94.08983 * 16 14 12 18 18 H 1.48500 * 109.47512 * 214.08706 * 16 14 12 19 19 H 1.48492 * 109.46979 * 334.09337 * 16 14 12 20 20 C 1.46503 * 119.99941 * 182.68954 * 11 9 8 21 21 C 1.50697 * 109.47085 * 84.62447 * 20 11 9 22 22 O 1.20821 * 120.00162 * 0.02562 * 21 20 11 23 23 O 1.34230 * 119.99720 * 179.97438 * 21 20 11 24 24 C 1.45203 * 116.99808 * 179.97438 * 23 21 20 25 25 H 1.08993 * 109.47387 * 305.00997 * 1 2 3 26 26 H 1.09004 * 109.46918 * 65.01784 * 1 2 3 27 27 H 1.09000 * 109.46918 * 185.00893 * 1 2 3 28 28 H 1.09003 * 109.47161 * 240.00281 * 2 1 3 29 29 H 1.09003 * 109.47233 * 119.99918 * 2 1 3 30 30 H 1.08005 * 125.56593 * 0.02617 * 4 3 2 31 31 H 1.07999 * 126.45243 * 179.97438 * 7 5 4 32 32 H 0.97005 * 120.00269 * 180.02562 * 15 14 12 33 33 H 1.09005 * 109.47163 * 204.62599 * 20 11 9 34 34 H 1.09004 * 109.47111 * 324.62486 * 20 11 9 35 35 H 1.09005 * 109.47387 * 300.00552 * 24 23 21 36 36 H 1.09009 * 109.47077 * 60.00099 * 24 23 21 37 37 H 1.08995 * 109.47278 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3816 2.0922 -1.0970 5 6 2.7843 3.3261 -0.7060 6 17 3.3486 4.5949 -1.7479 7 6 2.6650 3.3953 0.6857 8 6 2.1823 2.1748 1.1128 9 6 1.9010 1.7917 2.4989 10 8 1.3551 0.7302 2.7382 11 7 2.2467 2.6144 3.5089 12 6 2.8104 3.8318 3.2375 13 1 3.6952 3.8919 2.6209 14 6 2.2442 4.9909 3.7554 15 7 2.7606 6.1627 3.4609 16 14 0.7491 4.8827 4.8701 17 1 1.1894 4.8645 6.2882 18 1 -0.1270 6.0592 4.6389 19 1 -0.0033 3.6383 4.5694 20 6 2.0192 2.2057 4.8972 21 6 3.1762 1.3631 5.3688 22 8 4.0966 1.1285 4.6221 23 8 3.1846 0.8742 6.6189 24 6 4.3307 0.0704 7.0045 25 1 -0.3634 0.5895 0.8416 26 1 -0.3633 0.4340 -0.9316 27 1 -0.3633 -1.0238 0.0897 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.3578 1.7325 -2.1151 31 1 2.9057 4.2439 1.3090 32 1 2.3657 6.9715 3.8226 33 1 1.9339 3.0911 5.5273 34 1 1.0984 1.6257 4.9590 35 1 4.4024 -0.7981 6.3498 36 1 5.2389 0.6670 6.9173 37 1 4.2118 -0.2607 8.0362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906749808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:06 Heat of formation + Delta-G solvation = -67.866451 kcal Electronic energy + Delta-G solvation = -24908.917511 eV Core-core repulsion = 21099.985983 eV Total energy + Delta-G solvation = -3808.931528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.42539 -41.57442 -39.99375 -37.60037 -37.24786 -36.86485 -34.78341 -34.05756 -31.46992 -30.05147 -29.54087 -27.82262 -26.98108 -24.41902 -23.37094 -22.33252 -21.41445 -20.62344 -19.55949 -18.97265 -18.16752 -17.58454 -17.26668 -17.02812 -16.79368 -16.31182 -15.81805 -15.36356 -15.29948 -15.02572 -14.71976 -14.54482 -14.27839 -14.13659 -13.80450 -13.57734 -13.52482 -13.35776 -13.07577 -12.94591 -12.89512 -12.30436 -12.25320 -12.07646 -11.93973 -11.83057 -11.64797 -11.52839 -11.09074 -10.71208 -9.76702 -9.44334 -9.03921 -8.43650 -6.34746 0.55114 1.10423 1.25096 1.29113 1.35864 1.43534 1.51913 1.70850 2.00579 2.19126 2.51857 2.69767 2.93189 3.83207 3.87586 3.89987 4.03849 4.09272 4.18150 4.22260 4.29822 4.30337 4.42485 4.50411 4.64333 4.75411 4.85524 5.10906 5.24491 5.25927 5.28054 5.39552 5.78215 5.99446 6.02423 6.13716 6.33937 6.69978 6.90489 7.19796 7.56874 8.64283 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.006123 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.432038 B = 4571.478393 C = 5725.468873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 N -0.409 5.409 4 C 0.046 3.954 5 C -0.155 4.155 6 Cl -0.056 7.056 7 C -0.124 4.124 8 C -0.050 4.050 9 C 0.570 3.430 10 O -0.601 6.601 11 N -0.453 5.453 12 C -0.343 4.343 13 H 0.082 0.918 14 C 0.036 3.964 15 N -0.890 5.890 16 Si 0.916 3.084 17 H -0.246 1.246 18 H -0.281 1.281 19 H -0.252 1.252 20 C 0.107 3.893 21 C 0.453 3.547 22 O -0.526 6.526 23 O -0.363 6.363 24 C 0.028 3.972 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.216 0.784 31 H 0.168 0.832 32 H 0.283 0.717 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -9.796 -2.356 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 N -0.084 5.084 4 C -0.091 4.091 5 C -0.188 4.188 6 Cl -0.028 7.028 7 C -0.150 4.150 8 C -0.162 4.162 9 C 0.363 3.637 10 O -0.488 6.488 11 N -0.174 5.174 12 C -0.471 4.471 13 H 0.099 0.901 14 C -0.170 4.170 15 N -0.526 5.526 16 Si 0.740 3.260 17 H -0.170 1.170 18 H -0.207 1.207 19 H -0.175 1.175 20 C -0.017 4.017 21 C 0.295 3.705 22 O -0.414 6.414 23 O -0.279 6.279 24 C -0.065 4.065 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.146 0.854 29 H 0.096 0.904 30 H 0.232 0.768 31 H 0.185 0.815 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.231 -10.473 -2.426 11.225 hybrid contribution 0.105 0.685 0.581 0.905 sum -3.127 -9.788 -1.845 10.439 Atomic orbital electron populations 1.22002 0.93353 1.03722 1.01970 1.22163 0.96597 0.78033 1.05189 1.44198 1.47414 1.12368 1.04395 1.22143 1.03355 0.90576 0.93032 1.20216 1.14788 0.92374 0.91463 1.98267 1.88415 1.50669 1.65411 1.22676 1.00294 0.98382 0.93603 1.19691 1.15357 0.93111 0.88023 1.17281 0.78431 0.83583 0.84409 1.90621 1.47253 1.25223 1.85705 1.42918 1.56135 1.16605 1.01723 1.18885 1.11533 0.80924 1.35734 0.90052 1.26067 0.98983 0.94287 0.97634 1.69702 1.41446 0.98467 1.42945 0.86245 0.80270 0.79169 0.80351 1.17029 1.20699 1.17532 1.21525 0.95441 0.98588 0.86155 1.24635 0.88186 0.77656 0.80046 1.90609 1.37667 1.56813 1.56304 1.86494 1.47323 1.63326 1.30796 1.23563 0.86221 0.93762 1.02953 0.94724 0.90983 0.88765 0.85417 0.90426 0.76787 0.81508 0.90708 0.87017 0.85657 0.92359 0.92397 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 10.11 71.98 0.73 -3.10 16 2 C 0.10 2.73 6.08 86.38 0.53 3.26 16 3 N -0.41 -14.30 2.77 -510.80 -1.41 -15.71 16 4 C 0.05 1.42 11.35 83.48 0.95 2.37 16 5 C -0.16 -5.84 6.66 22.04 0.15 -5.69 16 6 Cl -0.06 -1.89 29.30 -2.72 -0.08 -1.97 16 7 C -0.12 -5.65 9.10 22.61 0.21 -5.45 16 8 C -0.05 -2.23 6.80 40.34 0.27 -1.95 16 9 C 0.57 27.42 7.41 86.41 0.64 28.06 16 10 O -0.60 -28.62 13.85 -4.46 -0.06 -28.68 16 11 N -0.45 -22.02 1.57 -644.26 -1.01 -23.03 16 12 C -0.34 -17.98 6.73 84.09 0.57 -17.41 16 13 H 0.08 4.78 6.15 -2.91 -0.02 4.76 16 14 C 0.04 1.85 5.48 84.94 0.47 2.32 16 15 N -0.89 -48.05 13.96 21.67 0.30 -47.74 16 16 Si 0.92 38.67 24.82 68.60 1.70 40.38 16 17 H -0.25 -9.44 7.06 99.48 0.70 -8.73 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.25 -10.36 6.50 99.48 0.65 -9.72 16 20 C 0.11 4.55 4.08 85.63 0.35 4.90 16 21 C 0.45 18.99 7.99 71.24 0.57 19.56 16 22 O -0.53 -25.41 16.06 21.98 0.35 -25.06 16 23 O -0.36 -12.31 10.57 -51.42 -0.54 -12.85 16 24 C 0.03 0.71 10.56 113.37 1.20 1.90 16 25 H 0.03 1.13 7.53 -2.39 -0.02 1.11 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.13 2.32 8.12 -2.39 -0.02 2.30 16 29 H 0.08 2.54 6.84 -2.39 -0.02 2.52 16 30 H 0.22 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.17 8.77 4.71 -2.91 -0.01 8.76 16 32 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 33 H 0.11 4.52 4.20 -2.38 -0.01 4.51 16 34 H 0.13 4.89 7.52 -2.39 -0.02 4.88 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 36 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 37 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -67.28 328.03 6.91 -60.36 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.05 Total: 25.53 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 6.61 Total: 28.77 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.12 Total: -86.48 kcal Atomic # 8 Polarization: -66.34 SS G_CDS: -0.25 Total: -66.59 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.70 Total: 40.38 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -67.28 6.91 -60.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906749808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.502 kcal (2) G-P(sol) polarization free energy of solvation -67.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds