Wall clock time and date at job start Tue Mar 31 2020 10:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00473 * 2 1 4 4 H 1.48495 * 109.47338 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47336 * 119.99436 * 3 2 1 7 7 C 1.38815 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99747 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.47030 * 125.64649 * 0.03561 * 9 7 2 11 11 C 1.54375 * 107.28750 * 181.05791 * 10 9 7 12 12 H 1.09003 * 110.70070 * 263.79549 * 11 10 9 13 13 O 1.42900 * 110.75449 * 140.50885 * 11 10 9 14 14 C 1.55153 * 102.91839 * 22.13991 * 11 10 9 15 15 H 1.08997 * 111.00229 * 82.64206 * 14 11 10 16 16 C 1.53005 * 111.00146 * 206.45058 * 14 11 10 17 17 N 1.46501 * 109.46969 * 181.82245 * 16 14 11 18 18 C 1.34780 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21717 * 120.00213 * 359.97438 * 18 17 16 20 20 C 1.46493 * 119.99975 * 179.97438 * 18 17 16 21 21 O 1.34996 * 126.00826 * 0.02562 * 20 18 17 22 22 C 1.33939 * 109.40358 * 179.97438 * 21 20 18 23 23 C 1.35076 * 108.82218 * 0.26799 * 22 21 20 24 24 C 1.36708 * 126.01317 * 179.97438 * 20 18 17 25 25 Cl 1.73606 * 126.66376 * 0.02562 * 24 20 18 26 26 C 1.47424 * 125.65327 * 179.97438 * 9 7 2 27 27 H 0.96999 * 119.99745 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.87994 * 300.44252 * 10 9 7 29 29 H 1.08997 * 109.87972 * 61.45503 * 10 9 7 30 30 H 0.96704 * 113.99913 * 66.48117 * 13 11 10 31 31 H 1.09004 * 109.47083 * 61.82431 * 16 14 11 32 32 H 1.09002 * 109.47274 * 301.82421 * 16 14 11 33 33 H 0.96994 * 120.00186 * 0.02562 * 17 16 14 34 34 H 1.08002 * 125.58495 * 179.97438 * 22 21 20 35 35 H 1.08003 * 126.43652 * 179.70126 * 23 22 21 36 36 H 1.09004 * 110.36517 * 37.06617 * 26 9 7 37 37 H 1.08996 * 110.36510 * 274.74561 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0007 11 6 -0.4493 -4.0444 0.0270 12 1 -0.6322 -4.4187 -0.9803 13 8 -1.5638 -4.3162 0.8790 14 6 0.8511 -4.6559 0.6122 15 1 0.8555 -4.5963 1.7005 16 6 1.0365 -6.1008 0.1442 17 7 2.2484 -6.6585 0.7497 18 6 2.6148 -7.9269 0.4786 19 8 1.9385 -8.6092 -0.2688 20 6 3.8269 -8.4844 1.0836 21 8 4.6622 -7.8398 1.9257 22 6 5.6613 -8.6602 2.2759 23 6 5.4868 -9.8483 1.6573 24 6 4.3105 -9.7491 0.8954 25 17 3.6112 -10.9893 -0.0980 26 6 1.9332 -3.7312 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5584 -2.0519 0.8823 29 1 -0.5539 -2.0822 -0.9018 30 1 -2.4015 -3.9552 0.5581 31 1 1.1300 -6.1219 -0.9416 32 1 0.1734 -6.6941 0.4462 33 1 2.7871 -6.1149 1.3456 34 1 6.4758 -8.4109 2.9399 35 1 6.1294 -10.7128 1.7357 36 1 2.8325 -3.7406 0.6165 37 1 2.1666 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958379874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:58 Heat of formation + Delta-G solvation = -43.861080 kcal Electronic energy + Delta-G solvation = -23503.742119 eV Core-core repulsion = 19695.851542 eV Total energy + Delta-G solvation = -3807.890577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.09637 -39.61316 -38.21340 -36.87818 -35.23332 -34.73524 -33.22374 -32.29953 -30.67236 -29.43356 -27.59368 -25.71151 -24.12061 -22.78322 -22.15116 -20.80083 -20.26801 -19.99680 -18.69562 -17.01219 -16.89498 -16.80061 -16.54969 -15.86264 -15.24346 -14.90359 -14.45955 -14.22991 -14.06672 -13.84909 -13.57745 -13.37108 -13.20042 -12.67579 -12.55676 -12.46247 -12.05766 -11.51176 -11.27892 -11.23124 -11.00258 -10.82313 -10.64578 -10.31992 -10.09090 -10.03135 -9.84580 -9.84152 -9.26391 -9.22108 -8.89528 -8.68020 -6.93038 -5.78071 -3.12697 0.63429 1.71465 1.83865 2.44442 2.96648 3.06993 3.36955 3.41159 3.42490 4.27908 4.40412 4.45235 4.70461 4.78682 4.96877 5.14507 5.18918 5.29002 5.40537 5.47136 5.64091 5.67356 5.81948 5.95224 6.00062 6.17240 6.23242 6.32171 6.37658 6.50523 6.78459 7.36525 7.37150 7.46584 7.72047 7.97847 8.16275 8.17514 9.13319 9.73876 10.38027 11.33471 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.002965 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.714695 B = 9440.324052 C =10448.571935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.058 0.942 13 O -0.566 6.566 14 C -0.108 4.108 15 H 0.091 0.909 16 C 0.133 3.867 17 N -0.709 5.709 18 C 0.595 3.405 19 O -0.507 6.507 20 C -0.056 4.056 21 O -0.149 6.149 22 C 0.008 3.992 23 C -0.216 4.216 24 C -0.054 4.054 25 Cl -0.006 7.006 26 C 0.141 3.859 27 H 0.254 0.746 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.376 0.624 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.219 0.781 35 H 0.166 0.834 36 H 0.043 0.957 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -18.544 3.938 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.371 6.371 14 C -0.128 4.128 15 H 0.109 0.891 16 C 0.010 3.990 17 N -0.360 5.360 18 C 0.379 3.621 19 O -0.383 6.383 20 C -0.109 4.109 21 O -0.044 6.044 22 C -0.062 4.062 23 C -0.235 4.235 24 C -0.084 4.084 25 Cl 0.023 6.977 26 C 0.014 3.986 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.223 0.777 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.235 0.765 35 H 0.183 0.817 36 H 0.061 0.939 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.932 -18.867 3.736 20.805 hybrid contribution 0.451 1.173 -0.104 1.261 sum 8.383 -17.695 3.632 19.914 Atomic orbital electron populations 1.69927 1.04943 1.25307 1.56793 1.24817 0.95757 0.97787 1.01974 0.86163 0.78448 0.82984 0.77933 1.21112 1.21559 1.21093 1.19022 0.90445 0.82249 1.44298 0.90298 1.44294 1.01321 0.99924 1.87395 1.21843 0.85188 0.88492 1.01870 1.23114 0.85030 0.97904 0.91614 0.92453 1.86421 1.18873 1.80118 1.51719 1.22621 0.96297 0.92119 1.01779 0.89114 1.21487 0.85877 0.93564 0.98101 1.45935 1.28122 1.12725 1.49198 1.16413 0.82069 0.82306 0.81279 1.90938 1.51974 1.59566 1.35866 1.22009 0.96093 0.92315 1.00531 1.84210 1.30596 1.39819 1.49758 1.24378 0.92210 0.88730 1.00887 1.21672 0.98880 1.00766 1.02213 1.21281 0.96566 0.91058 0.99535 1.98391 1.82970 1.49765 1.66550 1.21627 0.94058 0.85795 0.97075 0.93604 0.92400 0.93572 0.77665 0.90859 0.90673 0.75778 0.76462 0.81687 0.93892 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.31 55.49 0.57 -25.98 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -14.94 3.39 -170.03 -0.58 -15.51 16 10 C 0.15 3.55 5.16 -3.03 -0.02 3.54 16 11 C 0.08 1.52 3.80 -24.87 -0.09 1.43 16 12 H 0.06 0.97 8.04 -51.93 -0.42 0.56 16 13 O -0.57 -9.66 13.39 -35.23 -0.47 -10.13 16 14 C -0.11 -1.83 2.79 -88.46 -0.25 -2.08 16 15 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 16 C 0.13 1.95 5.12 -4.04 -0.02 1.93 16 17 N -0.71 -9.51 5.44 -61.67 -0.34 -9.84 16 18 C 0.59 8.55 7.78 -12.93 -0.10 8.45 16 19 O -0.51 -8.58 15.54 5.17 0.08 -8.50 16 20 C -0.06 -0.69 7.13 -36.81 -0.26 -0.95 16 21 O -0.15 -1.51 10.40 4.74 0.05 -1.46 16 22 C 0.01 0.05 12.07 29.61 0.36 0.41 16 23 C -0.22 -1.74 10.88 -39.86 -0.43 -2.18 16 24 C -0.05 -0.63 6.76 -39.28 -0.27 -0.89 16 25 Cl -0.01 -0.07 27.84 -51.86 -1.44 -1.51 16 26 C 0.14 2.75 6.56 -2.52 -0.02 2.73 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.06 1.53 7.29 -51.93 -0.38 1.15 16 29 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 30 H 0.38 4.97 9.12 45.56 0.42 5.38 16 31 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 4.87 8.19 -40.82 -0.33 4.54 16 34 H 0.22 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -33.20 333.80 -7.06 -40.26 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.59 Total: 5.34 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.35 Total: 5.61 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.34 Total: -51.33 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.34 Total: -20.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.44 Total: -1.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.20 -7.06 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958379874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.602 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds