Wall clock time and date at job start Tue Mar 31 2020 10:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00473 * 2 1 4 4 H 1.48495 * 109.47338 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47336 * 119.99436 * 3 2 1 7 7 C 1.38815 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99747 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.47030 * 125.64649 * 0.03561 * 9 7 2 11 11 C 1.54375 * 107.28750 * 181.05791 * 10 9 7 12 12 H 1.09003 * 110.70070 * 263.79549 * 11 10 9 13 13 O 1.42900 * 110.75449 * 140.50885 * 11 10 9 14 14 C 1.55153 * 102.91839 * 22.13991 * 11 10 9 15 15 H 1.08997 * 111.00229 * 82.64206 * 14 11 10 16 16 C 1.53005 * 111.00146 * 206.45058 * 14 11 10 17 17 N 1.46501 * 109.46969 * 181.82245 * 16 14 11 18 18 C 1.34780 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21717 * 120.00213 * 359.97438 * 18 17 16 20 20 C 1.46493 * 119.99975 * 179.97438 * 18 17 16 21 21 O 1.34996 * 126.00826 * 0.02562 * 20 18 17 22 22 C 1.33939 * 109.40358 * 179.97438 * 21 20 18 23 23 C 1.35076 * 108.82218 * 0.26799 * 22 21 20 24 24 C 1.36708 * 126.01317 * 179.97438 * 20 18 17 25 25 Cl 1.73606 * 126.66376 * 0.02562 * 24 20 18 26 26 C 1.47424 * 125.65327 * 179.97438 * 9 7 2 27 27 H 0.96999 * 119.99745 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.87994 * 300.44252 * 10 9 7 29 29 H 1.08997 * 109.87972 * 61.45503 * 10 9 7 30 30 H 0.96704 * 113.99913 * 66.48117 * 13 11 10 31 31 H 1.09004 * 109.47083 * 61.82431 * 16 14 11 32 32 H 1.09002 * 109.47274 * 301.82421 * 16 14 11 33 33 H 0.96994 * 120.00186 * 0.02562 * 17 16 14 34 34 H 1.08002 * 125.58495 * 179.97438 * 22 21 20 35 35 H 1.08003 * 126.43652 * 179.70126 * 23 22 21 36 36 H 1.09004 * 110.36517 * 37.06617 * 26 9 7 37 37 H 1.08996 * 110.36510 * 274.74561 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0007 11 6 -0.4493 -4.0444 0.0270 12 1 -0.6322 -4.4187 -0.9803 13 8 -1.5638 -4.3162 0.8790 14 6 0.8511 -4.6559 0.6122 15 1 0.8555 -4.5963 1.7005 16 6 1.0365 -6.1008 0.1442 17 7 2.2484 -6.6585 0.7497 18 6 2.6148 -7.9269 0.4786 19 8 1.9385 -8.6092 -0.2688 20 6 3.8269 -8.4844 1.0836 21 8 4.6622 -7.8398 1.9257 22 6 5.6613 -8.6602 2.2759 23 6 5.4868 -9.8483 1.6573 24 6 4.3105 -9.7491 0.8954 25 17 3.6112 -10.9893 -0.0980 26 6 1.9332 -3.7312 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5584 -2.0519 0.8823 29 1 -0.5539 -2.0822 -0.9018 30 1 -2.4015 -3.9552 0.5581 31 1 1.1300 -6.1219 -0.9416 32 1 0.1734 -6.6941 0.4462 33 1 2.7871 -6.1149 1.3456 34 1 6.4758 -8.4109 2.9399 35 1 6.1294 -10.7128 1.7357 36 1 2.8325 -3.7406 0.6165 37 1 2.1666 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958379874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:57 Heat of formation + Delta-G solvation = -69.746042 kcal Electronic energy + Delta-G solvation = -23504.864576 eV Core-core repulsion = 19695.851542 eV Total energy + Delta-G solvation = -3809.013033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.82320 -40.78242 -39.71109 -37.75319 -36.65387 -36.18658 -34.14200 -33.86011 -31.91780 -30.72059 -29.26438 -27.31275 -25.59417 -23.86211 -22.90987 -22.24847 -21.66660 -21.25277 -19.70276 -18.84427 -18.24052 -17.61795 -17.48638 -17.20026 -16.73546 -16.26065 -15.78992 -15.71313 -15.22765 -14.83763 -14.68184 -14.54346 -14.38862 -13.99841 -13.97020 -13.70102 -13.41986 -13.21613 -13.10243 -12.68485 -12.46111 -12.34246 -12.17381 -11.92596 -11.80064 -11.54518 -11.24309 -10.82473 -10.74452 -10.72121 -10.31247 -9.73115 -8.93844 -7.86227 -5.22847 -0.20227 0.88193 1.21110 1.46940 1.49974 1.56118 1.63535 1.94788 2.13482 2.48473 3.22954 3.34037 3.54769 3.56056 3.65676 3.75883 3.88240 4.14243 4.17998 4.37691 4.40142 4.45461 4.60437 4.73175 4.74889 4.86427 4.93819 5.12456 5.17345 5.32268 5.41788 5.48678 5.62543 5.71242 6.16448 6.34327 6.88992 6.93279 7.07075 7.73906 8.37264 9.23664 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.002965 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.714695 B = 9440.324052 C =10448.571935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.098 3.902 12 H 0.077 0.923 13 O -0.569 6.569 14 C -0.090 4.090 15 H 0.087 0.913 16 C 0.147 3.853 17 N -0.704 5.704 18 C 0.594 3.406 19 O -0.541 6.541 20 C -0.090 4.090 21 O -0.155 6.155 22 C 0.036 3.964 23 C -0.225 4.225 24 C -0.060 4.060 25 Cl -0.019 7.019 26 C 0.139 3.861 27 H 0.247 0.753 28 H 0.020 0.980 29 H 0.014 0.986 30 H 0.393 0.607 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.269 0.731 35 H 0.192 0.808 36 H 0.055 0.945 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -19.628 4.928 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.034 3.966 11 C 0.037 3.963 12 H 0.095 0.905 13 O -0.376 6.376 14 C -0.110 4.110 15 H 0.105 0.895 16 C 0.023 3.977 17 N -0.355 5.355 18 C 0.381 3.619 19 O -0.421 6.421 20 C -0.143 4.143 21 O -0.050 6.050 22 C -0.033 4.033 23 C -0.244 4.244 24 C -0.090 4.090 25 Cl 0.010 6.990 26 C 0.014 3.986 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.243 0.757 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.284 0.716 35 H 0.209 0.791 36 H 0.074 0.926 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.204 -19.972 4.736 22.922 hybrid contribution -0.160 1.461 -0.353 1.512 sum 10.044 -18.511 4.383 21.511 Atomic orbital electron populations 1.70154 1.06333 1.25413 1.58114 1.25673 0.96643 1.01134 1.02449 0.85131 0.77124 0.78648 0.78299 1.20261 1.22228 1.20122 1.19460 0.91155 0.83506 1.43276 0.89530 1.44601 1.02104 1.01260 1.87250 1.21616 0.84660 0.91810 0.98482 1.22878 0.86138 0.94172 0.93063 0.90496 1.86390 1.19501 1.79914 1.51844 1.22412 0.94448 0.92871 1.01236 0.89490 1.21225 0.86636 0.91797 0.98030 1.45811 1.27735 1.12763 1.49185 1.16627 0.82480 0.82017 0.80780 1.90909 1.53366 1.60313 1.37465 1.21553 0.96801 0.92964 1.02986 1.84210 1.31067 1.40324 1.49377 1.25441 0.91263 0.87509 0.99115 1.22045 0.98100 1.02400 1.01867 1.21679 0.97531 0.90497 0.99343 1.98384 1.83400 1.50180 1.67068 1.21790 0.95109 0.83892 0.97816 0.94380 0.96222 0.96825 0.75699 0.90884 0.90567 0.74887 0.71560 0.79054 0.92628 0.95154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.46 10.31 21.65 0.22 -56.24 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.98 44.97 29.55 68.60 2.03 46.99 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.25 -13.44 10.28 84.04 0.86 -12.58 16 8 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -31.25 3.39 -691.85 -2.35 -33.60 16 10 C 0.16 7.71 5.16 86.75 0.45 8.16 16 11 C 0.10 3.52 3.80 31.80 0.12 3.64 16 12 H 0.08 2.51 8.04 -2.39 -0.02 2.49 16 13 O -0.57 -18.90 13.39 -148.98 -1.99 -20.89 16 14 C -0.09 -2.95 2.79 -9.40 -0.03 -2.97 16 15 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.15 4.11 5.12 86.38 0.44 4.55 16 17 N -0.70 -18.03 5.44 -467.23 -2.54 -20.57 16 18 C 0.59 16.68 7.78 86.39 0.67 17.36 16 19 O -0.54 -18.27 15.54 -4.40 -0.07 -18.33 16 20 C -0.09 -2.10 7.13 24.06 0.17 -1.93 16 21 O -0.15 -2.73 10.40 -5.96 -0.06 -2.80 16 22 C 0.04 0.35 12.07 67.09 0.81 1.16 16 23 C -0.23 -2.92 10.88 22.09 0.24 -2.68 16 24 C -0.06 -1.30 6.76 22.46 0.15 -1.15 16 25 Cl -0.02 -0.46 27.84 -2.72 -0.08 -0.53 16 26 C 0.14 5.30 6.56 86.86 0.57 5.87 16 27 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.02 1.08 7.29 -2.39 -0.02 1.06 16 29 H 0.01 0.73 7.50 -2.39 -0.02 0.71 16 30 H 0.39 10.07 9.12 -74.05 -0.68 9.39 16 31 H 0.07 2.09 8.04 -2.38 -0.02 2.07 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.41 9.28 8.19 -92.71 -0.76 8.52 16 34 H 0.27 -0.37 8.06 -2.91 -0.02 -0.39 16 35 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.03 1.14 7.96 -2.39 -0.02 1.13 16 Total: -1.00 -74.16 333.80 -0.22 -74.38 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.30 Total: 15.39 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 4.93 Total: 16.20 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.67 Total: -110.40 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -2.13 Total: -42.02 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.53 kcal Total: -74.16 -0.22 -74.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958379874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.632 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds