Wall clock time and date at job start Tue Mar 31 2020 10:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99871 * 2 1 4 4 H 1.48490 * 109.47387 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47218 * 120.00070 * 3 2 1 6 6 H 1.48504 * 109.46930 * 239.99629 * 3 2 1 7 7 C 1.38812 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99563 * 169.37989 * 7 2 1 9 9 N 1.36935 * 120.00312 * 349.38111 * 7 2 1 10 10 C 1.47148 * 120.98048 * 328.70959 * 9 7 2 11 11 C 1.52881 * 108.60890 * 230.50124 * 10 9 7 12 12 O 1.42958 * 109.29678 * 307.93848 * 11 10 9 13 13 C 1.42961 * 114.17049 * 62.44501 * 12 11 10 14 14 C 1.47147 * 120.98108 * 148.99179 * 9 7 2 15 15 H 1.08999 * 109.68399 * 249.16063 * 14 9 7 16 16 C 1.53005 * 109.68609 * 9.68203 * 14 9 7 17 17 N 1.46495 * 109.46989 * 299.32244 * 16 14 9 18 18 C 1.34772 * 120.00136 * 179.97438 * 17 16 14 19 19 O 1.21718 * 119.99923 * 0.02562 * 18 17 16 20 20 C 1.46521 * 120.00397 * 179.97438 * 18 17 16 21 21 C 1.36611 * 125.98302 * 180.02562 * 20 18 17 22 22 C 1.40253 * 106.74110 * 179.97438 * 21 20 18 23 23 C 1.35369 * 107.11548 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 125.63281 * 180.02562 * 23 22 21 25 25 O 1.33958 * 108.73888 * 359.77083 * 23 22 21 26 26 H 0.97000 * 119.99783 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.68697 * 350.28427 * 10 9 7 28 28 H 1.09004 * 109.67988 * 110.83542 * 10 9 7 29 29 H 1.09002 * 109.58471 * 187.92650 * 11 10 9 30 30 H 1.08996 * 109.36749 * 67.81753 * 11 10 9 31 31 H 1.08997 * 109.51594 * 177.49221 * 13 12 11 32 32 H 1.09001 * 109.54816 * 57.37172 * 13 12 11 33 33 H 1.09003 * 109.46514 * 59.31812 * 16 14 9 34 34 H 1.09000 * 109.47291 * 179.31510 * 16 14 9 35 35 H 0.97006 * 119.99863 * 0.02562 * 17 16 14 36 36 H 1.07994 * 126.62850 * 359.97438 * 21 20 18 37 37 H 1.07990 * 126.43972 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0763 -1.2102 -0.1718 9 7 1.3431 -2.3778 0.2196 10 6 0.1530 -2.4238 1.0838 11 6 0.3334 -3.5490 2.1029 12 8 0.6679 -4.7581 1.4175 13 6 1.9021 -4.7009 0.6982 14 6 1.7988 -3.6336 -0.3974 15 1 1.0817 -3.9524 -1.1538 16 6 3.1696 -3.4227 -1.0433 17 7 3.0668 -2.3958 -2.0830 18 6 4.1577 -2.0416 -2.7907 19 8 5.2283 -2.5754 -2.5663 20 6 4.0548 -1.0149 -3.8309 21 6 5.0764 -0.5647 -4.6182 22 6 4.5325 0.4098 -5.4677 23 6 3.2167 0.5113 -5.1666 24 17 2.0833 1.5798 -5.9329 25 8 2.9323 -0.3529 -4.1833 26 1 -0.4850 0.8401 -0.0004 27 1 0.0405 -1.4729 1.6047 28 1 -0.7326 -2.6186 0.4790 29 1 -0.5934 -3.6903 2.6591 30 1 1.1361 -3.2872 2.7922 31 1 2.1040 -5.6708 0.2437 32 1 2.7111 -4.4438 1.3819 33 1 3.8832 -3.1014 -0.2845 34 1 3.5092 -4.3579 -1.4886 35 1 2.2136 -1.9701 -2.2615 36 1 6.1042 -0.8952 -4.5915 37 1 5.0637 0.9731 -6.2205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050819925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:13 Heat of formation + Delta-G solvation = -31.275436 kcal Electronic energy + Delta-G solvation = -24737.609521 eV Core-core repulsion = 20930.264698 eV Total energy + Delta-G solvation = -3807.344823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.67719 -39.30967 -38.31284 -37.07832 -35.45674 -33.76343 -33.12732 -31.71489 -30.57439 -29.57146 -27.26911 -25.73339 -23.49690 -22.92668 -21.95421 -21.55058 -20.09029 -19.70217 -18.43081 -16.96419 -16.53861 -16.33858 -15.96748 -15.76969 -15.01541 -14.66380 -14.37628 -14.12716 -13.77703 -13.67816 -13.49046 -13.20983 -13.04948 -12.92450 -12.66073 -12.23238 -11.94363 -11.61717 -11.46368 -11.07742 -10.89727 -10.81517 -10.45753 -10.29698 -10.10657 -10.09893 -10.01842 -9.68283 -9.05127 -8.79385 -8.60879 -8.33255 -6.76623 -5.94257 -3.44259 1.02787 1.09491 2.20877 3.13875 3.28454 3.34134 3.36550 3.44914 3.72054 4.31843 4.49722 4.75419 4.98989 5.11468 5.24415 5.40250 5.50601 5.57787 5.66539 5.71505 5.80696 5.96256 6.00200 6.10913 6.16167 6.17317 6.31191 6.48160 6.66103 6.67870 6.88679 7.03737 7.46260 7.65348 7.83262 7.97153 8.25269 8.48957 9.01903 9.62373 10.21178 11.12224 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005185 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.995679 B = 5398.722591 C = 6460.996508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.016 3.984 3 Si 0.893 3.107 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.262 4.262 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.133 3.867 17 N -0.677 5.677 18 C 0.593 3.407 19 O -0.538 6.538 20 C -0.039 4.039 21 C -0.128 4.128 22 C -0.188 4.188 23 C 0.046 3.954 24 Cl 0.028 6.972 25 O -0.144 6.144 26 H 0.257 0.743 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -1.484 -7.859 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.185 4.185 3 Si 0.723 3.277 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.010 3.990 17 N -0.327 5.327 18 C 0.377 3.623 19 O -0.419 6.419 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.208 4.208 23 C -0.033 4.033 24 Cl 0.057 6.943 25 O -0.040 6.040 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.261 0.739 36 H 0.186 0.814 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.673 -1.836 -7.594 9.104 hybrid contribution 0.014 1.779 -0.212 1.792 sum 4.688 -0.057 -7.806 9.106 Atomic orbital electron populations 1.69959 1.05167 1.25878 1.52890 1.25111 0.95276 0.98165 0.99931 0.86504 0.79148 0.83604 0.78487 1.21363 1.20804 1.20594 1.19140 0.91200 0.83344 1.45445 0.91087 1.44045 1.31962 1.02800 1.52843 1.21333 0.88882 0.96864 0.91093 1.23281 0.99170 0.86508 0.95325 1.87805 1.39987 1.36060 1.67193 1.22851 0.86705 0.98631 0.94065 1.21442 0.93442 0.89502 0.93936 0.93964 1.21295 0.98095 0.89876 0.89774 1.46017 1.12178 1.39686 1.34813 1.16454 0.84934 0.80751 0.80120 1.90843 1.27890 1.54774 1.68369 1.22403 0.84260 1.00242 1.02298 1.21843 1.00499 0.97254 0.95324 1.21455 0.91527 1.03185 1.04644 1.22817 0.91412 0.95203 0.93869 1.98436 1.61578 1.58544 1.75777 1.84104 1.35488 1.41671 1.42752 0.93312 0.88948 0.95263 0.90178 0.94117 0.89831 0.93423 0.90908 0.91669 0.73913 0.81435 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 11.14 55.49 0.62 -23.52 16 2 C 0.02 0.40 5.06 -17.43 -0.09 0.31 16 3 Si 0.89 21.11 29.57 -169.99 -5.03 16.09 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -6.47 7.07 -15.06 -0.11 -6.58 16 8 H 0.07 1.78 5.80 -52.48 -0.30 1.48 16 9 N -0.59 -13.44 3.04 -164.55 -0.50 -13.94 16 10 C 0.14 3.23 5.35 -3.75 -0.02 3.21 16 11 C 0.04 0.66 6.97 37.10 0.26 0.92 16 12 O -0.39 -7.48 10.74 -35.23 -0.38 -7.86 16 13 C 0.06 0.97 6.29 37.31 0.23 1.21 16 14 C 0.12 2.37 3.21 -67.42 -0.22 2.15 16 15 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.13 2.39 4.45 -4.04 -0.02 2.37 16 17 N -0.68 -12.91 3.77 -61.67 -0.23 -13.15 16 18 C 0.59 11.23 7.78 -12.92 -0.10 11.13 16 19 O -0.54 -10.92 16.86 5.17 0.09 -10.84 16 20 C -0.04 -0.68 7.13 -36.83 -0.26 -0.94 16 21 C -0.13 -1.86 10.62 -39.41 -0.42 -2.28 16 22 C -0.19 -2.42 10.84 -39.85 -0.43 -2.85 16 23 C 0.05 0.69 7.93 29.71 0.24 0.92 16 24 Cl 0.03 0.36 29.30 -51.86 -1.52 -1.16 16 25 O -0.14 -2.57 10.40 4.69 0.05 -2.53 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.39 7.56 -51.93 -0.39 1.00 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.42 8.67 7.08 -40.82 -0.29 8.38 16 36 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -28.45 327.01 -7.16 -35.61 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.25 Total: 6.78 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.93 Total: 9.58 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.11 Total: -50.60 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.24 Total: -21.22 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.45 -7.16 -35.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050819925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.335 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds