Wall clock time and date at job start Tue Mar 31 2020 10:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99871 * 2 1 4 4 H 1.48490 * 109.47387 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47218 * 120.00070 * 3 2 1 6 6 H 1.48504 * 109.46930 * 239.99629 * 3 2 1 7 7 C 1.38812 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99563 * 169.37989 * 7 2 1 9 9 N 1.36935 * 120.00312 * 349.38111 * 7 2 1 10 10 C 1.47148 * 120.98048 * 328.70959 * 9 7 2 11 11 C 1.52881 * 108.60890 * 230.50124 * 10 9 7 12 12 O 1.42958 * 109.29678 * 307.93848 * 11 10 9 13 13 C 1.42961 * 114.17049 * 62.44501 * 12 11 10 14 14 C 1.47147 * 120.98108 * 148.99179 * 9 7 2 15 15 H 1.08999 * 109.68399 * 249.16063 * 14 9 7 16 16 C 1.53005 * 109.68609 * 9.68203 * 14 9 7 17 17 N 1.46495 * 109.46989 * 299.32244 * 16 14 9 18 18 C 1.34772 * 120.00136 * 179.97438 * 17 16 14 19 19 O 1.21718 * 119.99923 * 0.02562 * 18 17 16 20 20 C 1.46521 * 120.00397 * 179.97438 * 18 17 16 21 21 C 1.36611 * 125.98302 * 180.02562 * 20 18 17 22 22 C 1.40253 * 106.74110 * 179.97438 * 21 20 18 23 23 C 1.35369 * 107.11548 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 125.63281 * 180.02562 * 23 22 21 25 25 O 1.33958 * 108.73888 * 359.77083 * 23 22 21 26 26 H 0.97000 * 119.99783 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.68697 * 350.28427 * 10 9 7 28 28 H 1.09004 * 109.67988 * 110.83542 * 10 9 7 29 29 H 1.09002 * 109.58471 * 187.92650 * 11 10 9 30 30 H 1.08996 * 109.36749 * 67.81753 * 11 10 9 31 31 H 1.08997 * 109.51594 * 177.49221 * 13 12 11 32 32 H 1.09001 * 109.54816 * 57.37172 * 13 12 11 33 33 H 1.09003 * 109.46514 * 59.31812 * 16 14 9 34 34 H 1.09000 * 109.47291 * 179.31510 * 16 14 9 35 35 H 0.97006 * 119.99863 * 0.02562 * 17 16 14 36 36 H 1.07994 * 126.62850 * 359.97438 * 21 20 18 37 37 H 1.07990 * 126.43972 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0763 -1.2102 -0.1718 9 7 1.3431 -2.3778 0.2196 10 6 0.1530 -2.4238 1.0838 11 6 0.3334 -3.5490 2.1029 12 8 0.6679 -4.7581 1.4175 13 6 1.9021 -4.7009 0.6982 14 6 1.7988 -3.6336 -0.3974 15 1 1.0817 -3.9524 -1.1538 16 6 3.1696 -3.4227 -1.0433 17 7 3.0668 -2.3958 -2.0830 18 6 4.1577 -2.0416 -2.7907 19 8 5.2283 -2.5754 -2.5663 20 6 4.0548 -1.0149 -3.8309 21 6 5.0764 -0.5647 -4.6182 22 6 4.5325 0.4098 -5.4677 23 6 3.2167 0.5113 -5.1666 24 17 2.0833 1.5798 -5.9329 25 8 2.9323 -0.3529 -4.1833 26 1 -0.4850 0.8401 -0.0004 27 1 0.0405 -1.4729 1.6047 28 1 -0.7326 -2.6186 0.4790 29 1 -0.5934 -3.6903 2.6591 30 1 1.1361 -3.2872 2.7922 31 1 2.1040 -5.6708 0.2437 32 1 2.7111 -4.4438 1.3819 33 1 3.8832 -3.1014 -0.2845 34 1 3.5092 -4.3579 -1.4886 35 1 2.2136 -1.9701 -2.2615 36 1 6.1042 -0.8952 -4.5915 37 1 5.0637 0.9731 -6.2205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050819925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:13 Heat of formation + Delta-G solvation = -49.860135 kcal Electronic energy + Delta-G solvation = -24738.415414 eV Core-core repulsion = 20930.264698 eV Total energy + Delta-G solvation = -3808.150716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.87926 -40.81671 -39.84838 -38.15135 -37.02860 -35.43395 -34.34388 -33.37720 -32.26728 -30.83072 -29.02307 -27.19278 -25.26784 -24.30772 -23.21111 -22.96518 -21.51783 -21.27327 -19.79666 -18.55387 -17.86424 -17.74983 -17.53572 -17.30814 -16.51758 -16.27480 -16.12153 -15.59033 -15.38227 -15.19798 -14.80300 -14.57742 -14.47019 -14.19770 -14.10346 -13.61287 -13.28144 -13.14028 -12.92407 -12.74879 -12.54555 -12.52587 -12.19685 -12.01588 -11.87663 -11.52512 -11.27347 -11.23062 -10.69321 -10.58272 -10.12077 -9.64609 -8.63726 -7.90447 -5.40683 -0.22157 -0.02051 1.09600 1.37498 1.40886 1.44479 1.85627 2.07111 2.36547 2.43535 3.03710 3.26392 3.42495 3.67102 3.76718 3.98649 4.21067 4.26524 4.31932 4.39235 4.47780 4.57904 4.63485 4.65967 4.71266 4.75350 5.00595 5.09816 5.11374 5.28391 5.33178 5.54747 5.62486 5.65462 6.29024 6.35197 6.46565 6.99161 7.08572 7.74334 8.30019 9.13824 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005185 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.995679 B = 5398.722591 C = 6460.996508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 0.937 3.063 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.148 3.852 11 C 0.047 3.953 12 O -0.397 6.397 13 C 0.059 3.941 14 C 0.123 3.877 15 H 0.036 0.964 16 C 0.138 3.862 17 N -0.684 5.684 18 C 0.594 3.406 19 O -0.557 6.557 20 C -0.079 4.079 21 C -0.110 4.110 22 C -0.169 4.169 23 C 0.030 3.970 24 Cl 0.042 6.958 25 O -0.172 6.172 26 H 0.250 0.750 27 H 0.065 0.935 28 H 0.005 0.995 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.121 0.879 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.413 0.587 36 H 0.189 0.811 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -2.031 -8.622 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.767 3.233 4 H -0.219 1.219 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.030 4.030 12 O -0.316 6.316 13 C -0.020 4.020 14 C 0.017 3.983 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.333 5.333 18 C 0.380 3.620 19 O -0.439 6.439 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.189 4.189 23 C -0.048 4.048 24 Cl 0.070 6.930 25 O -0.070 6.070 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.250 0.750 36 H 0.207 0.793 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.170 -2.407 -8.355 10.661 hybrid contribution -0.422 1.941 -0.075 1.988 sum 5.748 -0.467 -8.430 10.214 Atomic orbital electron populations 1.70076 1.06024 1.25624 1.55092 1.25559 0.95714 1.00128 1.01061 0.85809 0.78031 0.81453 0.78050 1.21867 1.20797 1.20934 1.19211 0.91046 0.84076 1.43153 0.91410 1.44254 1.31757 1.03583 1.53478 1.21162 0.88067 0.97092 0.91390 1.23127 1.00574 0.85180 0.94163 1.87809 1.40895 1.35599 1.67274 1.22987 0.86122 0.99586 0.93289 1.21598 0.93722 0.88449 0.94512 0.94603 1.21309 0.96956 0.90808 0.89459 1.46059 1.11902 1.40042 1.35251 1.16622 0.84426 0.80787 0.80173 1.90813 1.28206 1.55709 1.69216 1.22284 0.85307 1.01702 1.03810 1.22247 1.00756 0.96197 0.93823 1.21920 0.90523 1.02138 1.04310 1.23349 0.92775 0.95138 0.93575 1.98439 1.61372 1.57869 1.75272 1.84052 1.36159 1.42704 1.44046 0.94075 0.91622 0.97705 0.87777 0.93722 0.86162 0.92935 0.92086 0.88956 0.74977 0.79335 0.77760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.15 11.14 21.65 0.24 -50.91 16 2 C -0.03 -1.44 5.06 84.86 0.43 -1.01 16 3 Si 0.94 44.02 29.57 68.60 2.03 46.05 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.24 -12.21 7.07 84.03 0.59 -11.61 16 8 H 0.07 3.42 5.80 -2.91 -0.02 3.40 16 9 N -0.60 -27.62 3.04 -674.52 -2.05 -29.67 16 10 C 0.15 6.75 5.35 86.22 0.46 7.21 16 11 C 0.05 1.73 6.97 71.94 0.50 2.24 16 12 O -0.40 -14.29 10.74 -148.98 -1.60 -15.89 16 13 C 0.06 1.87 6.29 72.08 0.45 2.32 16 14 C 0.12 4.61 3.21 44.97 0.14 4.75 16 15 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 16 C 0.14 4.82 4.45 86.38 0.38 5.20 16 17 N -0.68 -26.13 3.77 -467.23 -1.76 -27.89 16 18 C 0.59 22.33 7.78 86.40 0.67 23.00 16 19 O -0.56 -22.19 16.86 -4.41 -0.07 -22.27 16 20 C -0.08 -2.70 7.13 24.05 0.17 -2.53 16 21 C -0.11 -2.93 10.62 22.38 0.24 -2.70 16 22 C -0.17 -3.88 10.84 22.10 0.24 -3.64 16 23 C 0.03 0.86 7.93 67.16 0.53 1.39 16 24 Cl 0.04 1.02 29.30 -2.72 -0.08 0.94 16 25 O -0.17 -6.12 10.40 -6.13 -0.06 -6.19 16 26 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 27 H 0.07 3.34 6.33 -2.39 -0.02 3.32 16 28 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 29 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 2.28 7.56 -2.39 -0.02 2.26 16 34 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.41 17.34 7.08 -92.70 -0.66 16.69 16 36 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.21 2.89 8.06 -2.92 -0.02 2.87 16 Total: -1.00 -61.86 327.01 1.92 -59.94 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.46 Total: 21.26 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 4.82 Total: 24.63 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -3.57 Total: -108.47 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.74 Total: -44.34 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: 1.02 SS G_CDS: -0.08 Total: 0.94 kcal Total: -61.86 1.92 -59.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050819925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.078 kcal (2) G-P(sol) polarization free energy of solvation -61.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds