Wall clock time and date at job start Tue Mar 31 2020 10:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48497 * 109.47280 * 240.00457 * 3 2 1 5 5 H 1.48504 * 109.46874 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47000 * 120.00097 * 3 2 1 7 7 C 1.38813 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99525 * 169.18984 * 7 2 1 9 9 N 1.36930 * 120.00084 * 349.18751 * 7 2 1 10 10 C 1.47148 * 120.98415 * 328.42439 * 9 7 2 11 11 C 1.53297 * 108.38770 * 230.55872 * 10 9 7 12 12 O 1.42965 * 109.21958 * 307.69561 * 11 10 9 13 13 C 1.42962 * 114.16333 * 62.58308 * 12 11 10 14 14 C 1.47154 * 120.98243 * 148.44666 * 9 7 2 15 15 H 1.08997 * 109.68533 * 249.16315 * 14 9 7 16 16 C 1.53005 * 109.71060 * 9.70571 * 14 9 7 17 17 N 1.46501 * 109.46762 * 298.63210 * 16 14 9 18 18 C 1.34781 * 119.99817 * 180.02562 * 17 16 14 19 19 O 1.21634 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.47206 * 119.99803 * 179.97438 * 18 17 16 21 21 C 1.47085 * 127.20917 * 0.02562 * 20 18 17 22 22 C 1.34118 * 105.97312 * 179.97438 * 21 20 18 23 23 O 1.34290 * 109.17899 * 359.97438 * 22 21 20 24 24 C 1.33683 * 110.91550 * 359.76380 * 23 22 21 25 25 Cl 1.73596 * 125.82780 * 180.24711 * 24 23 22 26 26 H 0.96998 * 119.99777 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.68422 * 110.83457 * 10 9 7 28 28 H 1.09006 * 109.68333 * 350.28382 * 10 9 7 29 29 H 1.09004 * 109.51227 * 187.77494 * 11 10 9 30 30 H 1.08993 * 109.51112 * 67.62109 * 11 10 9 31 31 H 1.09007 * 109.50824 * 177.49366 * 13 12 11 32 32 H 1.08995 * 109.55833 * 57.36938 * 13 12 11 33 33 H 1.09000 * 109.47129 * 58.63421 * 16 14 9 34 34 H 1.09005 * 109.46829 * 178.63183 * 16 14 9 35 35 H 0.96996 * 120.00257 * 359.97438 * 17 16 14 36 36 H 1.08002 * 127.01039 * 359.93708 * 21 20 18 37 37 H 1.08000 * 125.41017 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0759 -1.2103 -0.1760 9 7 1.3438 -2.3776 0.2214 10 6 0.1599 -2.4241 1.0941 11 6 0.3531 -3.5545 2.1113 12 8 0.6781 -4.7615 1.4175 13 6 1.9044 -4.7033 0.6849 14 6 1.7906 -3.6317 -0.4054 15 1 1.0647 -3.9465 -1.1551 16 6 3.1548 -3.4213 -1.0654 17 7 3.0392 -2.4020 -2.1112 18 6 4.1224 -2.0503 -2.8322 19 8 5.1957 -2.5796 -2.6147 20 6 4.0061 -1.0264 -3.8834 21 6 2.7955 -0.2899 -4.2777 22 6 3.1698 0.5311 -5.2700 23 8 4.4802 0.3633 -5.5109 24 6 5.0019 -0.5564 -4.6928 25 17 6.6601 -1.0694 -4.6665 26 1 -0.4850 0.8400 0.0004 27 1 -0.7302 -2.6172 0.4953 28 1 0.0520 -1.4739 1.6173 29 1 -0.5677 -3.6965 2.6771 30 1 1.1638 -3.2966 2.7926 31 1 2.0997 -5.6719 0.2244 32 1 2.7214 -4.4501 1.3605 33 1 3.8744 -3.0927 -0.3156 34 1 3.4931 -4.3586 -1.5073 35 1 2.1831 -1.9807 -2.2854 36 1 1.8068 -0.3904 -3.8549 37 1 2.5205 1.2181 -5.7922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050881238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:37 Heat of formation + Delta-G solvation = -31.073640 kcal Electronic energy + Delta-G solvation = -24786.987758 eV Core-core repulsion = 20979.651686 eV Total energy + Delta-G solvation = -3807.336072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.50978 -39.18153 -38.22935 -36.91685 -35.31705 -33.61243 -32.94963 -31.43314 -30.43665 -29.48094 -27.25829 -25.82321 -23.48629 -23.12184 -21.84477 -21.12009 -19.88563 -19.61105 -18.34651 -16.79520 -16.40938 -15.99216 -15.89387 -15.70425 -15.05233 -14.66253 -14.63713 -14.32058 -13.82660 -13.70839 -13.43954 -13.10355 -12.85865 -12.78861 -12.54659 -12.10187 -11.86619 -11.57667 -11.16426 -11.07343 -10.89501 -10.78121 -10.44281 -10.29429 -10.07667 -9.77154 -9.69817 -9.56821 -9.00839 -8.71404 -8.60810 -8.25521 -6.75753 -5.94058 -3.44146 1.15052 1.29924 2.12585 3.27810 3.33057 3.37717 3.44800 3.67699 3.81361 4.32132 4.51434 4.76605 4.95782 5.13181 5.23809 5.35341 5.57156 5.64146 5.69581 5.76079 5.86008 6.00548 6.08300 6.13940 6.20910 6.27285 6.30967 6.50132 6.73185 6.81057 7.04247 7.06777 7.45495 7.67892 7.84489 8.17738 8.26281 8.77356 9.02688 9.62711 10.22135 11.12173 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.005235 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.385928 B = 5347.523148 C = 6542.518251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.012 3.988 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.137 3.863 17 N -0.684 5.684 18 C 0.577 3.423 19 O -0.550 6.550 20 C -0.192 4.192 21 C -0.169 4.169 22 C -0.029 4.029 23 O -0.174 6.174 24 C 0.085 3.915 25 Cl 0.051 6.949 26 H 0.256 0.744 27 H 0.030 0.970 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.415 0.585 36 H 0.171 0.829 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -1.854 -7.503 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.335 5.335 18 C 0.363 3.637 19 O -0.430 6.430 20 C -0.198 4.198 21 C -0.189 4.189 22 C -0.095 4.095 23 O -0.071 6.071 24 C 0.006 3.994 25 Cl 0.080 6.920 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.253 0.747 36 H 0.188 0.812 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.623 -2.137 -7.538 9.097 hybrid contribution 0.102 1.514 0.084 1.520 sum 4.725 -0.623 -7.454 8.847 Atomic orbital electron populations 1.69975 1.05129 1.25765 1.53478 1.25113 0.95246 0.98102 1.00283 0.86512 0.79072 0.83519 0.78699 1.20392 1.21540 1.20943 1.19179 0.91317 0.83298 1.44660 0.91003 1.44072 1.32524 1.03007 1.52028 1.21408 0.88987 0.96726 0.90987 1.23354 0.99178 0.86597 0.95211 1.87804 1.40733 1.36221 1.66339 1.22861 0.86800 0.98679 0.93962 1.21438 0.93727 0.89343 0.93730 0.94067 1.21190 0.97665 0.90163 0.89695 1.45765 1.12201 1.40742 1.34744 1.17009 0.84485 0.81377 0.80787 1.90774 1.27330 1.55455 1.69461 1.21241 0.92660 1.03940 1.01942 1.23046 0.99517 0.97771 0.98526 1.23915 0.80454 1.03597 1.01531 1.83680 1.24364 1.48418 1.50682 1.22554 0.88846 0.93824 0.94183 1.98456 1.09673 1.86791 1.97129 0.93412 0.95235 0.89053 0.90248 0.94111 0.89882 0.93466 0.91288 0.92106 0.74667 0.81188 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.43 11.17 55.49 0.62 -22.81 16 2 C 0.01 0.31 5.05 -17.43 -0.09 0.22 16 3 Si 0.89 20.47 29.57 -169.99 -5.03 15.45 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.17 7.09 -15.06 -0.11 -6.28 16 8 H 0.07 1.80 5.84 -52.49 -0.31 1.49 16 9 N -0.59 -13.22 3.03 -164.30 -0.50 -13.72 16 10 C 0.14 3.20 5.38 -3.53 -0.02 3.18 16 11 C 0.03 0.65 6.99 37.31 0.26 0.91 16 12 O -0.39 -7.49 10.74 -35.23 -0.38 -7.87 16 13 C 0.06 0.97 6.29 37.31 0.23 1.20 16 14 C 0.12 2.38 3.20 -67.42 -0.22 2.16 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.49 4.44 -4.04 -0.02 2.48 16 17 N -0.68 -12.87 3.81 -61.45 -0.23 -13.11 16 18 C 0.58 11.14 7.81 -12.62 -0.10 11.04 16 19 O -0.55 -11.58 15.65 5.25 0.08 -11.50 16 20 C -0.19 -3.34 6.32 -103.24 -0.65 -3.99 16 21 C -0.17 -2.51 10.60 -37.45 -0.40 -2.90 16 22 C -0.03 -0.36 12.03 29.28 0.35 -0.01 16 23 O -0.17 -2.47 10.53 7.37 0.08 -2.40 16 24 C 0.08 1.37 7.99 30.16 0.24 1.61 16 25 Cl 0.05 0.76 27.91 -51.86 -1.45 -0.69 16 26 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.23 6.36 -51.93 -0.33 1.90 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.37 7.52 -51.93 -0.39 0.97 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.42 8.03 6.55 -40.82 -0.27 7.76 16 36 H 0.17 2.42 7.74 -52.49 -0.41 2.01 16 37 H 0.22 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -28.78 324.27 -6.64 -35.42 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.22 Total: 6.71 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.51 Total: 9.62 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.11 Total: -49.64 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.22 Total: -21.77 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -1.45 Total: -0.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.78 -6.64 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050881238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.348 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds