Wall clock time and date at job start Tue Mar 31 2020 10:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48497 * 109.47280 * 240.00457 * 3 2 1 5 5 H 1.48504 * 109.46874 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47000 * 120.00097 * 3 2 1 7 7 C 1.38813 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99525 * 169.18984 * 7 2 1 9 9 N 1.36930 * 120.00084 * 349.18751 * 7 2 1 10 10 C 1.47148 * 120.98415 * 328.42439 * 9 7 2 11 11 C 1.53297 * 108.38770 * 230.55872 * 10 9 7 12 12 O 1.42965 * 109.21958 * 307.69561 * 11 10 9 13 13 C 1.42962 * 114.16333 * 62.58308 * 12 11 10 14 14 C 1.47154 * 120.98243 * 148.44666 * 9 7 2 15 15 H 1.08997 * 109.68533 * 249.16315 * 14 9 7 16 16 C 1.53005 * 109.71060 * 9.70571 * 14 9 7 17 17 N 1.46501 * 109.46762 * 298.63210 * 16 14 9 18 18 C 1.34781 * 119.99817 * 180.02562 * 17 16 14 19 19 O 1.21634 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.47206 * 119.99803 * 179.97438 * 18 17 16 21 21 C 1.47085 * 127.20917 * 0.02562 * 20 18 17 22 22 C 1.34118 * 105.97312 * 179.97438 * 21 20 18 23 23 O 1.34290 * 109.17899 * 359.97438 * 22 21 20 24 24 C 1.33683 * 110.91550 * 359.76380 * 23 22 21 25 25 Cl 1.73596 * 125.82780 * 180.24711 * 24 23 22 26 26 H 0.96998 * 119.99777 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.68422 * 110.83457 * 10 9 7 28 28 H 1.09006 * 109.68333 * 350.28382 * 10 9 7 29 29 H 1.09004 * 109.51227 * 187.77494 * 11 10 9 30 30 H 1.08993 * 109.51112 * 67.62109 * 11 10 9 31 31 H 1.09007 * 109.50824 * 177.49366 * 13 12 11 32 32 H 1.08995 * 109.55833 * 57.36938 * 13 12 11 33 33 H 1.09000 * 109.47129 * 58.63421 * 16 14 9 34 34 H 1.09005 * 109.46829 * 178.63183 * 16 14 9 35 35 H 0.96996 * 120.00257 * 359.97438 * 17 16 14 36 36 H 1.08002 * 127.01039 * 359.93708 * 21 20 18 37 37 H 1.08000 * 125.41017 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0759 -1.2103 -0.1760 9 7 1.3438 -2.3776 0.2214 10 6 0.1599 -2.4241 1.0941 11 6 0.3531 -3.5545 2.1113 12 8 0.6781 -4.7615 1.4175 13 6 1.9044 -4.7033 0.6849 14 6 1.7906 -3.6317 -0.4054 15 1 1.0647 -3.9465 -1.1551 16 6 3.1548 -3.4213 -1.0654 17 7 3.0392 -2.4020 -2.1112 18 6 4.1224 -2.0503 -2.8322 19 8 5.1957 -2.5796 -2.6147 20 6 4.0061 -1.0264 -3.8834 21 6 2.7955 -0.2899 -4.2777 22 6 3.1698 0.5311 -5.2700 23 8 4.4802 0.3633 -5.5109 24 6 5.0019 -0.5564 -4.6928 25 17 6.6601 -1.0694 -4.6665 26 1 -0.4850 0.8400 0.0004 27 1 -0.7302 -2.6172 0.4953 28 1 0.0520 -1.4739 1.6173 29 1 -0.5677 -3.6965 2.6771 30 1 1.1638 -3.2966 2.7926 31 1 2.0997 -5.6719 0.2244 32 1 2.7214 -4.4501 1.3605 33 1 3.8744 -3.0927 -0.3156 34 1 3.4931 -4.3586 -1.5073 35 1 2.1831 -1.9807 -2.2854 36 1 1.8068 -0.3904 -3.8549 37 1 2.5205 1.2181 -5.7922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050881238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:36 Heat of formation + Delta-G solvation = -49.887537 kcal Electronic energy + Delta-G solvation = -24787.803590 eV Core-core repulsion = 20979.651686 eV Total energy + Delta-G solvation = -3808.151904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.65484 -40.71305 -39.76645 -38.10599 -36.91293 -35.29550 -34.21239 -33.09432 -32.07215 -30.63579 -28.99117 -27.31748 -25.23157 -24.50098 -23.27920 -22.36010 -21.44339 -21.05269 -19.67337 -18.46379 -17.65648 -17.46095 -17.39516 -17.16485 -16.47368 -16.24844 -16.06753 -15.90878 -15.34970 -15.31028 -14.95746 -14.64413 -14.33738 -14.08778 -13.88656 -13.54173 -13.24565 -13.09799 -12.86792 -12.72090 -12.49272 -12.33767 -12.14501 -11.98768 -11.83814 -11.29890 -11.09108 -10.98723 -10.63356 -10.54537 -9.93064 -9.66161 -8.59167 -7.85123 -5.36078 -0.02529 0.04262 1.01463 1.42654 1.46916 1.51395 2.16825 2.31922 2.45701 2.50963 3.05302 3.30832 3.45564 3.63716 3.70342 4.04770 4.20143 4.23126 4.33108 4.47345 4.49914 4.63091 4.65920 4.68062 4.71670 4.78150 5.02446 5.13311 5.17668 5.32012 5.54294 5.64736 5.69328 5.71565 6.31607 6.39433 6.66433 7.13338 7.26878 7.78326 8.34949 9.18910 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.005235 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.385928 B = 5347.523148 C = 6542.518251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.064 0.936 9 N -0.603 5.603 10 C 0.150 3.850 11 C 0.045 3.955 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.039 0.961 16 C 0.143 3.857 17 N -0.684 5.684 18 C 0.574 3.426 19 O -0.573 6.573 20 C -0.220 4.220 21 C -0.194 4.194 22 C 0.001 3.999 23 O -0.169 6.169 24 C 0.077 3.923 25 Cl 0.054 6.946 26 H 0.251 0.749 27 H 0.009 0.991 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.412 0.588 36 H 0.171 0.829 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -2.032 -8.264 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.221 4.221 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.082 0.918 9 N -0.329 5.329 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.057 0.943 16 C 0.019 3.981 17 N -0.334 5.334 18 C 0.361 3.639 19 O -0.456 6.456 20 C -0.225 4.225 21 C -0.214 4.214 22 C -0.064 4.064 23 O -0.066 6.066 24 C -0.002 4.002 25 Cl 0.083 6.917 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.188 0.812 37 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 4.776 -2.333 -8.302 9.858 hybrid contribution 0.067 1.545 0.280 1.572 sum 4.842 -0.788 -8.022 9.403 Atomic orbital electron populations 1.70078 1.05903 1.25677 1.55126 1.25505 0.95645 0.99866 1.01074 0.85806 0.77925 0.81438 0.78070 1.20208 1.21756 1.21959 1.19169 0.90935 0.84084 1.43061 0.91837 1.44252 1.32347 1.03694 1.52649 1.21236 0.88252 0.96854 0.91242 1.23223 1.00500 0.85350 0.94165 1.87808 1.41501 1.35854 1.66419 1.22984 0.86223 0.99643 0.93256 1.21556 0.93795 0.88397 0.94252 0.94350 1.21163 0.96700 0.90951 0.89326 1.45776 1.12015 1.40842 1.34786 1.17309 0.84044 0.81498 0.81012 1.90744 1.27997 1.56497 1.70355 1.21268 0.94443 1.04528 1.02292 1.23127 0.98985 0.99053 1.00198 1.24856 0.79667 1.02150 0.99775 1.83730 1.25262 1.47603 1.50019 1.22608 0.89029 0.94193 0.94367 1.98452 1.09256 1.86842 1.97135 0.93967 0.97334 0.91660 0.87787 0.93930 0.86411 0.93285 0.92962 0.89892 0.75045 0.81154 0.71794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.62 11.17 21.65 0.24 -48.38 16 2 C -0.02 -1.19 5.05 84.86 0.43 -0.77 16 3 Si 0.94 42.25 29.57 68.60 2.03 44.28 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.24 -11.75 7.09 84.03 0.60 -11.16 16 8 H 0.06 3.19 5.84 -2.91 -0.02 3.17 16 9 N -0.60 -26.91 3.03 -673.71 -2.04 -28.95 16 10 C 0.15 6.64 5.38 86.36 0.46 7.10 16 11 C 0.05 1.65 6.99 72.08 0.50 2.15 16 12 O -0.40 -14.28 10.74 -148.98 -1.60 -15.88 16 13 C 0.06 1.86 6.29 72.08 0.45 2.31 16 14 C 0.13 4.68 3.20 44.97 0.14 4.82 16 15 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 16 C 0.14 5.08 4.44 86.38 0.38 5.46 16 17 N -0.68 -25.66 3.81 -466.56 -1.78 -27.44 16 18 C 0.57 22.09 7.81 86.60 0.68 22.77 16 19 O -0.57 -24.14 15.65 -4.14 -0.06 -24.20 16 20 C -0.22 -7.49 6.32 -18.97 -0.12 -7.61 16 21 C -0.19 -5.49 10.60 23.65 0.25 -5.24 16 22 C 0.00 0.01 12.03 66.88 0.80 0.82 16 23 O -0.17 -4.42 10.53 3.47 0.04 -4.38 16 24 C 0.08 2.41 7.99 67.45 0.54 2.95 16 25 Cl 0.05 1.59 27.91 -2.72 -0.08 1.51 16 26 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 27 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.07 3.24 6.36 -2.38 -0.02 3.22 16 29 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 2.05 7.52 -2.39 -0.02 2.03 16 34 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.41 16.00 6.55 -92.71 -0.61 15.39 16 36 H 0.17 4.73 7.74 -2.91 -0.02 4.70 16 37 H 0.27 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -61.77 324.27 2.38 -59.39 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.51 Total: 20.44 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 5.12 Total: 23.61 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -3.58 Total: -104.77 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.63 Total: -44.46 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: 1.59 SS G_CDS: -0.08 Total: 1.51 kcal Total: -61.77 2.38 -59.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050881238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.505 kcal (2) G-P(sol) polarization free energy of solvation -61.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds