Wall clock time and date at job start Tue Mar 31 2020 10:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86799 * 120.00142 * 2 1 4 4 H 1.48494 * 109.47097 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46877 * 120.00172 * 3 2 1 6 6 H 1.48502 * 109.47305 * 239.99839 * 3 2 1 7 7 C 1.39869 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00141 * 206.85265 * 7 2 1 9 9 C 1.41198 * 119.99542 * 26.85749 * 7 2 1 10 10 C 1.40793 * 120.55996 * 204.06938 * 9 7 2 11 11 N 1.31475 * 120.38425 * 179.70086 * 10 9 7 12 12 C 1.32746 * 121.74337 * 0.59207 * 11 10 9 13 13 N 1.38402 * 119.43950 * 179.72122 * 12 11 10 14 14 C 1.47063 * 110.99891 * 359.97192 * 13 12 11 15 15 C 1.53749 * 107.94374 * 123.86436 * 14 13 12 16 16 H 1.08997 * 115.04462 * 246.61912 * 15 14 13 17 17 C 1.54882 * 104.59127 * 15.88008 * 15 14 13 18 18 H 1.09001 * 116.66669 * 205.50411 * 17 15 14 19 19 C 1.56957 * 85.80915 * 88.16390 * 17 15 14 20 20 C 1.53729 * 87.23587 * 25.29818 * 19 17 15 21 21 F 1.39899 * 113.57778 * 219.94526 * 20 19 17 22 22 F 1.39901 * 113.64602 * 89.17168 * 20 19 17 23 23 C 1.47154 * 111.00578 * 121.63510 * 13 12 11 24 24 C 1.39796 * 121.12186 * 359.69107 * 12 11 10 25 25 Cl 1.73593 * 120.25942 * 179.97438 * 24 12 11 26 26 C 1.36662 * 119.47316 * 0.02562 * 24 12 11 27 27 H 0.96997 * 120.00587 * 185.89671 * 1 2 3 28 28 H 1.08005 * 119.80998 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.76788 * 243.48381 * 14 13 12 30 30 H 1.08993 * 109.77237 * 4.24199 * 14 13 12 31 31 H 1.09004 * 113.53354 * 270.72461 * 19 17 15 32 32 H 1.08997 * 113.73823 * 139.90420 * 19 17 15 33 33 H 1.09010 * 110.00103 * 338.58421 * 23 13 12 34 34 H 1.09001 * 110.00689 * 99.94164 * 23 13 12 35 35 H 1.08007 * 120.79613 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 1.2781 2.7464 0.0006 5 1 3.0968 1.6963 1.2126 6 1 3.0968 1.6964 -1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0010 -1.2616 0.4230 9 6 1.4164 -2.3684 -0.5514 10 6 1.8298 -3.6497 -0.1398 11 7 1.2722 -4.7247 -0.6517 12 6 0.3192 -4.6461 -1.5724 13 7 -0.2308 -5.8089 -2.0831 14 6 0.3841 -6.9961 -1.4706 15 6 -0.7384 -7.8448 -0.8514 16 1 -0.7197 -7.9118 0.2364 17 6 -2.0389 -7.2983 -1.4909 18 1 -2.9579 -7.4307 -0.9200 19 6 -1.7769 -8.3397 -2.6357 20 6 -0.9871 -9.1624 -1.6048 21 9 0.1774 -9.7392 -2.1228 22 9 -1.7739 -10.0742 -0.8929 23 6 -1.6848 -5.8471 -1.8599 24 6 -0.1388 -3.4087 -2.0345 25 17 -1.3858 -3.3320 -3.2397 26 6 0.4038 -2.2601 -1.5306 27 1 -0.4851 -0.8355 0.0863 28 1 2.6064 -3.7502 0.6041 29 1 0.9067 -7.5750 -2.2321 30 1 1.0852 -6.6893 -0.6946 31 1 -1.1614 -7.9497 -3.4464 32 1 -2.6793 -8.8369 -2.9915 33 1 -1.9542 -5.1782 -1.0423 34 1 -2.2096 -5.5549 -2.7695 35 1 0.0663 -1.2928 -1.8725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165298067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:32 Heat of formation + Delta-G solvation = -41.110798 kcal Electronic energy + Delta-G solvation = -23943.590982 eV Core-core repulsion = 20024.732150 eV Total energy + Delta-G solvation = -3918.858832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.81337 -47.13894 -40.45271 -38.53017 -35.79155 -35.21826 -33.65010 -30.86173 -29.50685 -29.02472 -26.88762 -24.90862 -23.91425 -22.07385 -22.02317 -20.50790 -19.27631 -18.32647 -17.49997 -16.86717 -16.64058 -16.29491 -15.71601 -14.97456 -14.44213 -14.25811 -14.14484 -13.99282 -13.48750 -13.47496 -13.32256 -13.04616 -12.81435 -12.63275 -12.50711 -12.04307 -11.79751 -11.42355 -11.31945 -11.22772 -11.15242 -10.90882 -10.88013 -10.56748 -10.25430 -10.13687 -9.84180 -9.55517 -8.90407 -8.52563 -8.41715 -7.59836 -7.34230 -4.72106 2.17443 2.43149 2.97069 3.01297 3.07648 3.22256 3.41239 3.75559 3.80248 4.08612 4.13527 4.20758 4.31054 4.50146 5.08249 5.14888 5.18855 5.30298 5.42516 5.49087 5.59171 5.66581 5.90578 5.97832 6.09051 6.13495 6.23988 6.27729 6.40052 6.61142 6.76434 7.03535 7.28404 7.37244 7.56224 7.67540 7.89803 8.22377 8.43185 9.12151 9.70099 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.027609 B = 0.003711 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.918511 B = 7543.621443 C = 8117.766087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.037 3.963 3 Si 1.066 2.934 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.087 0.913 9 C 0.047 3.953 10 C -0.001 4.001 11 N -0.466 5.466 12 C 0.145 3.855 13 N -0.448 5.448 14 C 0.052 3.948 15 C -0.154 4.154 16 H 0.105 0.895 17 C -0.116 4.116 18 H 0.116 0.884 19 C -0.148 4.148 20 C 0.261 3.739 21 F -0.189 7.189 22 F -0.184 7.184 23 C 0.059 3.941 24 C -0.023 4.023 25 Cl -0.097 7.097 26 C -0.174 4.174 27 H 0.300 0.700 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -8.402 -2.274 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.187 4.187 3 Si 0.889 3.111 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.521 4.521 8 H 0.105 0.895 9 C 0.041 3.959 10 C -0.165 4.165 11 N -0.177 5.177 12 C -0.084 4.084 13 N -0.168 5.168 14 C -0.075 4.075 15 C -0.174 4.174 16 H 0.123 0.877 17 C -0.135 4.135 18 H 0.134 0.866 19 C -0.186 4.186 20 C 0.225 3.775 21 F -0.170 7.170 22 F -0.165 7.165 23 C -0.067 4.067 24 C -0.053 4.053 25 Cl -0.069 7.069 26 C -0.200 4.200 27 H 0.113 0.887 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.622 -7.635 -2.715 8.876 hybrid contribution -0.315 -1.140 0.554 1.306 sum -3.938 -8.775 -2.160 9.858 Atomic orbital electron populations 1.70523 1.08266 1.34396 1.26620 1.27215 0.95566 1.04778 0.91157 0.83602 0.75752 0.73415 0.78370 1.19570 1.19756 1.19638 1.20551 1.03835 0.93822 1.33846 0.89499 1.18454 0.91810 0.94317 0.91332 1.22393 1.04220 0.87127 1.02783 1.66781 1.09173 1.33956 1.07830 1.18554 1.01310 0.88164 1.00381 1.60493 1.02903 1.00311 1.53043 1.22456 0.95763 0.89333 0.99965 1.24663 0.98653 0.92607 1.01475 0.87651 1.24017 0.97758 0.95275 0.96498 0.86564 1.24530 1.01046 0.95225 0.97813 1.21994 0.79170 0.83561 0.92810 1.92983 1.49800 1.87023 1.87198 1.92988 1.74087 1.69882 1.79501 1.22754 0.88521 0.93761 1.01690 1.20836 0.94865 0.94476 0.95150 1.98264 1.53322 1.98555 1.56776 1.21099 1.02504 0.96474 0.99939 0.88683 0.84622 0.90074 0.87372 0.86149 0.89160 0.92560 0.89042 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.77 12.32 55.54 0.68 -18.09 16 2 C 0.04 0.84 4.94 -17.34 -0.09 0.75 16 3 Si 1.07 19.42 30.01 -169.99 -5.10 14.32 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.49 -11.64 8.98 -37.85 -0.34 -11.98 16 8 H 0.09 1.96 7.97 -52.49 -0.42 1.54 16 9 C 0.05 1.11 5.32 -106.65 -0.57 0.55 16 10 C 0.00 -0.03 10.97 -16.74 -0.18 -0.21 16 11 N -0.47 -10.30 7.88 -11.75 -0.09 -10.39 16 12 C 0.14 3.08 6.14 -155.06 -0.95 2.13 16 13 N -0.45 -8.09 4.78 -171.74 -0.82 -8.91 16 14 C 0.05 0.86 5.78 -3.35 -0.02 0.84 16 15 C -0.15 -2.14 4.90 -88.82 -0.44 -2.58 16 16 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 17 C -0.12 -1.47 5.16 -87.03 -0.45 -1.92 16 18 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.15 -1.73 7.19 -24.21 -0.17 -1.90 16 20 C 0.26 3.45 3.07 -25.93 -0.08 3.37 16 21 F -0.19 -2.75 16.23 2.25 0.04 -2.71 16 22 F -0.18 -2.49 17.39 2.25 0.04 -2.45 16 23 C 0.06 0.93 4.73 -3.23 -0.02 0.91 16 24 C -0.02 -0.49 6.01 -39.57 -0.24 -0.73 16 25 Cl -0.10 -1.82 25.75 -51.86 -1.34 -3.16 16 26 C -0.17 -4.09 7.81 -39.00 -0.30 -4.39 16 27 H 0.30 7.46 6.77 -40.82 -0.28 7.19 16 28 H 0.14 2.84 8.06 -52.48 -0.42 2.41 16 29 H 0.08 1.32 6.96 -51.93 -0.36 0.95 16 30 H 0.11 2.00 5.86 -51.93 -0.30 1.69 16 31 H 0.12 1.48 7.77 -51.93 -0.40 1.07 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.97 7.58 -51.92 -0.39 0.57 16 34 H 0.09 1.37 6.64 -51.93 -0.34 1.03 16 35 H 0.13 3.07 6.57 -52.48 -0.34 2.73 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -24.56 305.27 -9.17 -33.73 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.33 Total: 8.23 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -3.84 Total: -15.16 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.23 Total: -37.39 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.08 Total: -5.16 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.10 Total: 14.32 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.34 Total: -3.16 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.56 -9.17 -33.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165298067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.384 kcal (2) G-P(sol) polarization free energy of solvation -24.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds