Wall clock time and date at job start Tue Mar 31 2020 10:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86799 * 120.00142 * 2 1 4 4 H 1.48494 * 109.47097 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46877 * 120.00172 * 3 2 1 6 6 H 1.48502 * 109.47305 * 239.99839 * 3 2 1 7 7 C 1.39869 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00141 * 206.85265 * 7 2 1 9 9 C 1.41198 * 119.99542 * 26.85749 * 7 2 1 10 10 C 1.40793 * 120.55996 * 204.06938 * 9 7 2 11 11 N 1.31475 * 120.38425 * 179.70086 * 10 9 7 12 12 C 1.32746 * 121.74337 * 0.59207 * 11 10 9 13 13 N 1.38402 * 119.43950 * 179.72122 * 12 11 10 14 14 C 1.47063 * 110.99891 * 359.97192 * 13 12 11 15 15 C 1.53749 * 107.94374 * 123.86436 * 14 13 12 16 16 H 1.08997 * 115.04462 * 246.61912 * 15 14 13 17 17 C 1.54882 * 104.59127 * 15.88008 * 15 14 13 18 18 H 1.09001 * 116.66669 * 205.50411 * 17 15 14 19 19 C 1.56957 * 85.80915 * 88.16390 * 17 15 14 20 20 C 1.53729 * 87.23587 * 25.29818 * 19 17 15 21 21 F 1.39899 * 113.57778 * 219.94526 * 20 19 17 22 22 F 1.39901 * 113.64602 * 89.17168 * 20 19 17 23 23 C 1.47154 * 111.00578 * 121.63510 * 13 12 11 24 24 C 1.39796 * 121.12186 * 359.69107 * 12 11 10 25 25 Cl 1.73593 * 120.25942 * 179.97438 * 24 12 11 26 26 C 1.36662 * 119.47316 * 0.02562 * 24 12 11 27 27 H 0.96997 * 120.00587 * 185.89671 * 1 2 3 28 28 H 1.08005 * 119.80998 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.76788 * 243.48381 * 14 13 12 30 30 H 1.08993 * 109.77237 * 4.24199 * 14 13 12 31 31 H 1.09004 * 113.53354 * 270.72461 * 19 17 15 32 32 H 1.08997 * 113.73823 * 139.90420 * 19 17 15 33 33 H 1.09010 * 110.00103 * 338.58421 * 23 13 12 34 34 H 1.09001 * 110.00689 * 99.94164 * 23 13 12 35 35 H 1.08007 * 120.79613 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 1.2781 2.7464 0.0006 5 1 3.0968 1.6963 1.2126 6 1 3.0968 1.6964 -1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0010 -1.2616 0.4230 9 6 1.4164 -2.3684 -0.5514 10 6 1.8298 -3.6497 -0.1398 11 7 1.2722 -4.7247 -0.6517 12 6 0.3192 -4.6461 -1.5724 13 7 -0.2308 -5.8089 -2.0831 14 6 0.3841 -6.9961 -1.4706 15 6 -0.7384 -7.8448 -0.8514 16 1 -0.7197 -7.9118 0.2364 17 6 -2.0389 -7.2983 -1.4909 18 1 -2.9579 -7.4307 -0.9200 19 6 -1.7769 -8.3397 -2.6357 20 6 -0.9871 -9.1624 -1.6048 21 9 0.1774 -9.7392 -2.1228 22 9 -1.7739 -10.0742 -0.8929 23 6 -1.6848 -5.8471 -1.8599 24 6 -0.1388 -3.4087 -2.0345 25 17 -1.3858 -3.3320 -3.2397 26 6 0.4038 -2.2601 -1.5306 27 1 -0.4851 -0.8355 0.0863 28 1 2.6064 -3.7502 0.6041 29 1 0.9067 -7.5750 -2.2321 30 1 1.0852 -6.6893 -0.6946 31 1 -1.1614 -7.9497 -3.4464 32 1 -2.6793 -8.8369 -2.9915 33 1 -1.9542 -5.1782 -1.0423 34 1 -2.2096 -5.5549 -2.7695 35 1 0.0663 -1.2928 -1.8725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165298067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:31 Heat of formation + Delta-G solvation = -51.841668 kcal Electronic energy + Delta-G solvation = -23944.056307 eV Core-core repulsion = 20024.732150 eV Total energy + Delta-G solvation = -3919.324157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.88482 -48.21938 -41.84587 -40.08830 -37.42651 -36.80339 -35.17807 -32.59986 -31.17301 -30.30491 -28.24900 -26.42582 -25.22641 -23.69091 -23.49582 -21.98968 -20.42992 -20.07379 -18.69599 -18.20619 -17.81428 -17.41038 -17.31986 -16.69017 -15.76833 -15.72543 -15.61938 -15.12413 -14.89246 -14.78332 -14.58944 -14.52355 -14.21772 -14.17675 -13.87818 -13.53573 -13.22310 -12.92636 -12.86080 -12.67785 -12.38448 -12.20025 -12.02865 -11.98668 -11.77393 -11.47144 -11.19857 -11.17738 -10.56070 -10.26737 -10.11415 -9.36323 -9.02034 -6.52609 0.41388 0.65072 1.27728 1.53576 1.61441 1.81990 2.29244 2.34023 2.48910 2.71384 2.84156 3.05177 3.18440 3.23380 3.34750 3.86212 4.00345 4.16777 4.24044 4.28832 4.33862 4.43962 4.47380 4.65959 4.70414 4.78374 4.83456 4.86848 4.95342 5.12070 5.14588 5.34011 5.51357 5.68604 5.86747 5.93442 6.20380 6.48712 6.67652 7.35696 7.88861 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.027609 B = 0.003711 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.918511 B = 7543.621443 C = 8117.766087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.007 3.993 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.253 1.253 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.091 0.909 9 C 0.025 3.975 10 C -0.011 4.011 11 N -0.473 5.473 12 C 0.154 3.846 13 N -0.453 5.453 14 C 0.054 3.946 15 C -0.158 4.158 16 H 0.108 0.892 17 C -0.104 4.104 18 H 0.143 0.857 19 C -0.136 4.136 20 C 0.263 3.737 21 F -0.198 7.198 22 F -0.183 7.183 23 C 0.060 3.940 24 C -0.034 4.034 25 Cl -0.070 7.070 26 C -0.183 4.183 27 H 0.284 0.716 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.039 0.961 34 H 0.100 0.900 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -9.357 -2.860 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.211 4.211 3 Si 0.932 3.068 4 H -0.198 1.198 5 H -0.177 1.177 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.109 0.891 9 C 0.020 3.980 10 C -0.174 4.174 11 N -0.184 5.184 12 C -0.076 4.076 13 N -0.172 5.172 14 C -0.073 4.073 15 C -0.178 4.178 16 H 0.126 0.874 17 C -0.123 4.123 18 H 0.161 0.839 19 C -0.174 4.174 20 C 0.227 3.773 21 F -0.179 7.179 22 F -0.164 7.164 23 C -0.067 4.067 24 C -0.065 4.065 25 Cl -0.041 7.041 26 C -0.210 4.210 27 H 0.097 0.903 28 H 0.165 0.835 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.363 -8.623 -3.295 10.210 hybrid contribution -0.143 -1.028 0.658 1.229 sum -4.505 -9.651 -2.637 10.973 Atomic orbital electron populations 1.70632 1.09036 1.33341 1.29028 1.28499 0.95498 1.07589 0.89544 0.83012 0.74840 0.69594 0.79390 1.19777 1.17729 1.18793 1.20753 1.04304 0.94519 1.35208 0.89096 1.18710 0.92394 0.95045 0.91881 1.22631 1.04574 0.87037 1.03139 1.66912 1.09655 1.33637 1.08205 1.18940 1.00347 0.89260 0.99054 1.60447 1.04389 0.99639 1.52725 1.22369 0.96348 0.89118 0.99465 1.24611 0.98377 0.93154 1.01704 0.87390 1.24064 0.98030 0.93141 0.97035 0.83896 1.24498 1.01830 0.94139 0.96888 1.22019 0.79131 0.83076 0.93082 1.92970 1.50497 1.87139 1.87286 1.92993 1.73930 1.69828 1.79618 1.22745 0.86693 0.95721 1.01513 1.20928 0.95543 0.94224 0.95846 1.98259 1.51908 1.98539 1.55401 1.21051 1.03043 0.96482 1.00412 0.90337 0.83450 0.89796 0.89432 0.86606 0.86240 0.94273 0.88231 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.60 12.32 21.82 0.27 -39.33 16 2 C 0.01 0.34 4.94 85.23 0.42 0.76 16 3 Si 1.12 38.89 30.01 68.60 2.06 40.95 16 4 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.25 -8.00 7.11 99.48 0.71 -7.30 16 6 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 7 C -0.52 -25.09 8.98 23.39 0.21 -24.88 16 8 H 0.09 4.17 7.97 -2.91 -0.02 4.14 16 9 C 0.03 1.24 5.32 -21.18 -0.11 1.12 16 10 C -0.01 -0.50 10.97 85.37 0.94 0.43 16 11 N -0.47 -21.04 7.88 -191.08 -1.51 -22.55 16 12 C 0.15 6.53 6.14 133.32 0.82 7.35 16 13 N -0.45 -15.85 4.78 -697.27 -3.34 -19.19 16 14 C 0.05 1.74 5.78 86.52 0.50 2.24 16 15 C -0.16 -4.10 4.90 -9.63 -0.05 -4.14 16 16 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 17 C -0.10 -2.31 5.16 -8.47 -0.04 -2.36 16 18 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 19 C -0.14 -2.69 7.19 32.23 0.23 -2.46 16 20 C 0.26 6.25 3.07 31.11 0.10 6.35 16 21 F -0.20 -5.37 16.23 44.97 0.73 -4.64 16 22 F -0.18 -4.40 17.39 44.97 0.78 -3.62 16 23 C 0.06 1.74 4.73 86.55 0.41 2.15 16 24 C -0.03 -1.51 6.01 22.28 0.13 -1.37 16 25 Cl -0.07 -2.54 25.75 -2.72 -0.07 -2.61 16 26 C -0.18 -8.83 7.81 22.65 0.18 -8.66 16 27 H 0.28 14.74 6.77 -92.71 -0.63 14.11 16 28 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 29 H 0.08 2.63 6.96 -2.39 -0.02 2.61 16 30 H 0.09 3.22 5.86 -2.39 -0.01 3.20 16 31 H 0.12 2.48 7.77 -2.38 -0.02 2.46 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.30 7.58 -2.38 -0.02 1.28 16 34 H 0.10 2.76 6.64 -2.39 -0.02 2.74 16 35 H 0.11 5.68 6.57 -2.91 -0.02 5.66 16 Total: -1.00 -53.19 305.27 3.94 -49.25 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 1.29 Total: 25.21 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.73 Total: -23.47 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -4.57 Total: -81.06 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 1.51 Total: -8.26 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.06 Total: 40.95 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.07 Total: -2.61 kcal Total: -53.19 3.94 -49.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165298067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.592 kcal (2) G-P(sol) polarization free energy of solvation -53.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds