Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81009 * 1 3 3 C 1.76198 * 99.99845 * 2 1 4 4 N 1.33155 * 120.04433 * 359.97438 * 3 2 1 5 5 C 1.32264 * 120.06661 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.92857 * 179.72449 * 5 4 3 7 7 N 1.32332 * 120.14906 * 0.02562 * 5 4 3 8 8 C 1.33088 * 120.08361 * 0.02562 * 7 5 4 9 9 N 1.38002 * 120.03246 * 179.97438 * 8 7 5 10 10 C 1.46848 * 110.99819 * 124.20409 * 9 8 7 11 11 C 1.53044 * 109.52052 * 174.15752 * 10 9 8 12 12 C 1.53119 * 109.27424 * 59.18204 * 11 10 9 13 13 C 1.53120 * 109.16219 * 302.34197 * 12 11 10 14 14 H 1.09004 * 109.50153 * 297.71863 * 13 12 11 15 15 C 1.50700 * 109.53665 * 177.61805 * 13 12 11 16 16 H 1.08005 * 119.99805 * 0.17504 * 15 13 12 17 17 C 1.37873 * 120.00247 * 180.17581 * 15 13 12 18 18 N 1.31518 * 119.99693 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00101 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46750 * 90.00469 * 19 17 15 21 21 H 1.48493 * 109.47267 * 210.00129 * 19 17 15 22 22 H 1.48496 * 109.47154 * 330.00955 * 19 17 15 23 23 C 1.46846 * 110.99918 * 359.97438 * 9 8 7 24 24 N 1.32860 * 119.93202 * 359.97438 * 8 7 5 25 25 H 1.08995 * 109.47110 * 300.00221 * 1 2 3 26 26 H 1.09001 * 109.46866 * 59.99794 * 1 2 3 27 27 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46811 * 294.17400 * 10 9 8 29 29 H 1.08999 * 109.46339 * 54.14574 * 10 9 8 30 30 H 1.09004 * 109.50461 * 299.24144 * 11 10 9 31 31 H 1.09000 * 109.53463 * 179.14187 * 11 10 9 32 32 H 1.09003 * 109.51994 * 182.44052 * 12 11 10 33 33 H 1.08999 * 109.52234 * 62.25067 * 12 11 10 34 34 H 0.97001 * 119.99887 * 179.97438 * 18 17 15 35 35 H 1.08991 * 109.46466 * 305.85582 * 23 9 8 36 36 H 1.09000 * 109.46245 * 65.83519 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0966 2.5919 -0.0005 5 6 1.3258 3.8945 0.0000 6 17 -0.0059 5.0082 -0.0079 7 7 2.5679 4.3509 0.0005 8 6 3.5912 3.5000 0.0000 9 7 4.8862 3.9770 0.0000 10 6 5.6465 3.4353 1.1335 11 6 7.1104 3.8673 1.0205 12 6 7.1871 5.3965 1.0145 13 6 6.3477 5.9374 -0.1463 14 1 6.7596 5.5806 -1.0904 15 6 6.3698 7.4440 -0.1251 16 1 6.9289 7.9652 0.6380 17 6 5.6762 8.1572 -1.0796 18 7 4.9949 7.5226 -2.0085 19 14 5.7030 10.0248 -1.0528 20 1 6.8412 10.5153 -1.8710 21 1 4.4303 10.5462 -1.6126 22 1 5.8591 10.4976 0.3462 23 6 4.9060 5.4454 0.0000 24 7 3.3648 2.1908 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 5.2273 3.8132 2.0659 29 1 5.5873 2.3470 1.1236 30 1 7.5343 3.4780 0.0948 31 1 7.6719 3.4780 1.8698 32 1 8.2241 5.7087 0.8906 33 1 6.7990 5.7844 1.9564 34 1 4.5067 8.0243 -2.6799 35 1 4.3091 5.8167 -0.8329 36 1 4.4903 5.8142 0.9377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = 68.450083 kcal Electronic energy + Delta-G solvation = -21824.224779 eV Core-core repulsion = 18496.250001 eV Total energy + Delta-G solvation = -3327.974778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55136 -38.55956 -36.99511 -34.63257 -33.68813 -32.89195 -31.47633 -29.74829 -29.14213 -25.82783 -25.18855 -24.67413 -22.58847 -21.69132 -19.24887 -18.70908 -18.35963 -16.72724 -15.98958 -15.95199 -15.47151 -14.66189 -14.51228 -14.15191 -14.04843 -13.85144 -13.65977 -13.37931 -12.93022 -12.76542 -12.47986 -12.39720 -11.98990 -11.55917 -11.22194 -11.04177 -10.97709 -10.89071 -10.54341 -10.50393 -10.33013 -10.27627 -9.84710 -9.72715 -9.49125 -9.10718 -9.02276 -8.47663 -8.21833 -8.15861 -6.05213 -4.12831 0.71129 0.84360 0.89037 1.31718 1.95273 3.27030 3.33518 3.36682 3.38961 3.65490 4.16910 4.38807 4.46894 4.92542 4.99769 5.24519 5.31867 5.39786 5.51849 5.61592 5.68422 5.93297 6.22705 6.24317 6.29078 6.42426 6.53166 6.59111 6.76617 6.85195 6.96677 7.19467 7.52568 7.67448 7.85212 8.00742 8.17048 8.36964 8.91165 9.53324 11.00708 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.004566 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.305049 B = 6130.294065 C = 7591.695624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S 0.033 5.967 3 C 0.366 3.634 4 N -0.588 5.588 5 C 0.444 3.556 6 Cl 0.034 6.966 7 N -0.565 5.565 8 C 0.572 3.428 9 N -0.444 5.444 10 C 0.072 3.928 11 C -0.117 4.117 12 C -0.116 4.116 13 C 0.051 3.949 14 H 0.037 0.963 15 C -0.518 4.518 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.068 3.932 24 N -0.555 5.555 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.263 0.737 35 H 0.125 0.875 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 -13.410 5.385 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.263 5.737 3 C -0.019 4.019 4 N -0.320 5.320 5 C 0.137 3.863 6 Cl 0.062 6.938 7 N -0.296 5.296 8 C 0.209 3.791 9 N -0.162 5.162 10 C -0.054 4.054 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.032 3.968 14 H 0.055 0.945 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.056 4.056 24 N -0.285 5.285 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.143 0.857 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.442 -14.332 4.812 16.850 hybrid contribution -1.466 2.604 0.292 3.003 sum -8.908 -11.728 5.104 15.587 Atomic orbital electron populations 1.23630 0.94066 1.06450 1.07703 1.85863 1.06768 0.91596 1.89504 1.25192 0.86121 1.00739 0.89861 1.68842 1.35565 1.02667 1.24914 1.23050 0.88434 0.86793 0.88064 1.98446 1.41121 1.58648 1.95582 1.68771 0.98553 1.40371 1.21877 1.21522 0.90348 0.84084 0.83196 1.58458 1.03331 1.15364 1.39045 1.22185 0.94609 0.99949 0.88662 1.21679 0.93426 0.98475 1.01880 1.21760 1.00826 0.92371 1.00451 1.18785 0.89057 0.95120 0.93801 0.94516 1.21079 1.31123 0.90396 1.13034 0.92231 1.25008 0.95036 0.98570 0.95143 1.69842 1.31469 1.35357 1.15478 0.86579 0.77449 0.85635 0.78286 1.20633 1.21165 1.19871 1.22854 1.03259 0.76166 1.03321 1.68828 1.21580 1.15255 1.22795 0.88818 0.88765 0.87358 0.93922 0.89763 0.91145 0.91813 0.92509 0.93252 0.92728 0.85693 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.66 101.05 0.98 -0.24 16 2 S 0.03 0.38 22.92 -107.50 -2.46 -2.09 16 3 C 0.37 5.97 7.90 -89.99 -0.71 5.26 16 4 N -0.59 -9.65 9.30 -11.83 -0.11 -9.76 16 5 C 0.44 8.05 8.25 -91.29 -0.75 7.29 16 6 Cl 0.03 0.53 29.30 -51.86 -1.52 -0.99 16 7 N -0.56 -11.79 8.82 -12.42 -0.11 -11.90 16 8 C 0.57 11.80 7.19 -322.15 -2.32 9.48 16 9 N -0.44 -9.37 4.71 -175.29 -0.82 -10.19 16 10 C 0.07 1.26 5.33 -3.83 -0.02 1.24 16 11 C -0.12 -1.94 6.09 -26.65 -0.16 -2.10 16 12 C -0.12 -2.30 5.23 -26.61 -0.14 -2.44 16 13 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 14 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.52 -13.77 8.57 -34.44 -0.30 -14.06 16 16 H 0.06 1.56 7.75 -52.48 -0.41 1.15 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.97 11.33 55.43 0.63 -24.34 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.07 1.63 3.69 -3.84 -0.01 1.61 16 24 N -0.56 -10.36 9.77 -14.17 -0.14 -10.49 16 25 H 0.09 0.79 8.13 -51.92 -0.42 0.37 16 26 H 0.09 0.82 8.13 -51.92 -0.42 0.40 16 27 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.13 3.41 5.65 -51.93 -0.29 3.11 16 36 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -29.03 327.12 -12.82 -41.85 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.45 Total: -1.71 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -3.74 Total: 8.74 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.55 Total: -66.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.46 Total: -2.09 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -1.52 Total: -0.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.03 -12.82 -41.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.303 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds