Wall clock time and date at job start Tue Mar 31 2020 10:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81009 * 1 3 3 C 1.76198 * 99.99845 * 2 1 4 4 N 1.33155 * 120.04433 * 359.97438 * 3 2 1 5 5 C 1.32264 * 120.06661 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.92857 * 179.72449 * 5 4 3 7 7 N 1.32332 * 120.14906 * 0.02562 * 5 4 3 8 8 C 1.33088 * 120.08361 * 0.02562 * 7 5 4 9 9 N 1.38002 * 120.03246 * 179.97438 * 8 7 5 10 10 C 1.46848 * 110.99819 * 124.20409 * 9 8 7 11 11 C 1.53044 * 109.52052 * 174.15752 * 10 9 8 12 12 C 1.53119 * 109.27424 * 59.18204 * 11 10 9 13 13 C 1.53120 * 109.16219 * 302.34197 * 12 11 10 14 14 H 1.09004 * 109.50153 * 297.71863 * 13 12 11 15 15 C 1.50700 * 109.53665 * 177.61805 * 13 12 11 16 16 H 1.08005 * 119.99805 * 0.17504 * 15 13 12 17 17 C 1.37873 * 120.00247 * 180.17581 * 15 13 12 18 18 N 1.31518 * 119.99693 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00101 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46750 * 90.00469 * 19 17 15 21 21 H 1.48493 * 109.47267 * 210.00129 * 19 17 15 22 22 H 1.48496 * 109.47154 * 330.00955 * 19 17 15 23 23 C 1.46846 * 110.99918 * 359.97438 * 9 8 7 24 24 N 1.32860 * 119.93202 * 359.97438 * 8 7 5 25 25 H 1.08995 * 109.47110 * 300.00221 * 1 2 3 26 26 H 1.09001 * 109.46866 * 59.99794 * 1 2 3 27 27 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46811 * 294.17400 * 10 9 8 29 29 H 1.08999 * 109.46339 * 54.14574 * 10 9 8 30 30 H 1.09004 * 109.50461 * 299.24144 * 11 10 9 31 31 H 1.09000 * 109.53463 * 179.14187 * 11 10 9 32 32 H 1.09003 * 109.51994 * 182.44052 * 12 11 10 33 33 H 1.08999 * 109.52234 * 62.25067 * 12 11 10 34 34 H 0.97001 * 119.99887 * 179.97438 * 18 17 15 35 35 H 1.08991 * 109.46466 * 305.85582 * 23 9 8 36 36 H 1.09000 * 109.46245 * 65.83519 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0966 2.5919 -0.0005 5 6 1.3258 3.8945 0.0000 6 17 -0.0059 5.0082 -0.0079 7 7 2.5679 4.3509 0.0005 8 6 3.5912 3.5000 0.0000 9 7 4.8862 3.9770 0.0000 10 6 5.6465 3.4353 1.1335 11 6 7.1104 3.8673 1.0205 12 6 7.1871 5.3965 1.0145 13 6 6.3477 5.9374 -0.1463 14 1 6.7596 5.5806 -1.0904 15 6 6.3698 7.4440 -0.1251 16 1 6.9289 7.9652 0.6380 17 6 5.6762 8.1572 -1.0796 18 7 4.9949 7.5226 -2.0085 19 14 5.7030 10.0248 -1.0528 20 1 6.8412 10.5153 -1.8710 21 1 4.4303 10.5462 -1.6126 22 1 5.8591 10.4976 0.3462 23 6 4.9060 5.4454 0.0000 24 7 3.3648 2.1908 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 5.2273 3.8132 2.0659 29 1 5.5873 2.3470 1.1236 30 1 7.5343 3.4780 0.0948 31 1 7.6719 3.4780 1.8698 32 1 8.2241 5.7087 0.8906 33 1 6.7990 5.7844 1.9564 34 1 4.5067 8.0243 -2.6799 35 1 4.3091 5.8167 -0.8329 36 1 4.4903 5.8142 0.9377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:56 Heat of formation + Delta-G solvation = 53.396801 kcal Electronic energy + Delta-G solvation = -21824.877538 eV Core-core repulsion = 18496.250001 eV Total energy + Delta-G solvation = -3328.627537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.94900 -40.12236 -38.30871 -36.22905 -35.12545 -34.65162 -32.99145 -31.51348 -29.86580 -27.42785 -26.77913 -26.27548 -24.12170 -23.33037 -20.80499 -20.10872 -19.84836 -18.45374 -17.51745 -17.34161 -16.93766 -16.41598 -15.89120 -15.58542 -15.44853 -15.16770 -14.95294 -14.52826 -14.50444 -14.21765 -13.77713 -13.57858 -13.56310 -12.89146 -12.83031 -12.72394 -12.57546 -12.28465 -12.23390 -11.89824 -11.86682 -11.85970 -11.44692 -11.20566 -11.01877 -10.92650 -10.78763 -10.47330 -9.84973 -9.14112 -8.11032 -6.25962 -0.63827 -0.56112 -0.26735 0.08219 1.07310 1.41641 1.43284 1.52968 1.89303 2.24500 2.43074 2.78241 3.04321 3.21263 3.86819 3.99867 4.12320 4.23288 4.33715 4.38315 4.43724 4.68946 4.72254 4.82490 4.91123 4.95415 4.98303 5.05911 5.20393 5.24803 5.27685 5.59279 5.61710 5.88925 5.96530 6.04773 6.33169 6.76148 6.86224 7.43781 8.93283 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.004566 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.305049 B = 6130.294065 C = 7591.695624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S 0.068 5.932 3 C 0.347 3.653 4 N -0.575 5.575 5 C 0.435 3.565 6 Cl 0.054 6.946 7 N -0.603 5.603 8 C 0.560 3.440 9 N -0.458 5.458 10 C 0.071 3.929 11 C -0.107 4.107 12 C -0.110 4.110 13 C 0.047 3.953 14 H 0.002 0.998 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.017 3.983 18 N -0.913 5.913 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.094 3.906 24 N -0.564 5.564 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 -15.091 6.519 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.298 5.702 3 C -0.035 4.035 4 N -0.307 5.307 5 C 0.128 3.872 6 Cl 0.082 6.918 7 N -0.336 5.336 8 C 0.195 3.805 9 N -0.176 5.176 10 C -0.053 4.053 11 C -0.144 4.144 12 C -0.148 4.148 13 C 0.028 3.972 14 H 0.020 0.980 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.032 4.032 24 N -0.294 5.294 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.164 0.836 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.971 -16.055 5.960 18.890 hybrid contribution -1.457 2.955 -0.065 3.295 sum -9.427 -13.100 5.896 17.183 Atomic orbital electron populations 1.23837 0.91273 1.08841 1.07654 1.85841 1.09689 0.87188 1.87471 1.26270 0.85450 1.03102 0.88700 1.68993 1.35224 1.01864 1.24618 1.23376 0.88350 0.87825 0.87669 1.98442 1.39744 1.58244 1.95400 1.68712 0.99702 1.41444 1.23709 1.21539 0.90101 0.85031 0.83798 1.58444 1.04561 1.13612 1.40998 1.22336 0.94628 1.00767 0.87608 1.21650 0.93299 0.95932 1.03558 1.21646 1.00095 0.94727 0.98313 1.18738 0.90078 0.94251 0.94095 0.97980 1.21474 1.30838 0.92015 1.12913 0.92084 1.25771 0.94774 1.02826 0.94908 1.70010 1.32268 1.36761 1.16126 0.85624 0.77325 0.80574 0.78580 1.20001 1.21293 1.18991 1.22228 1.01927 0.78315 1.00695 1.68891 1.22794 1.13990 1.23745 0.88650 0.88976 0.83562 0.93759 0.88050 0.91470 0.87635 0.91853 0.93032 0.93077 0.89443 0.96335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.66 113.37 1.09 -0.82 16 2 S 0.07 1.40 22.92 -56.49 -1.29 0.10 16 3 C 0.35 10.95 7.90 180.13 1.42 12.37 16 4 N -0.58 -18.44 9.30 -191.35 -1.78 -20.22 16 5 C 0.43 15.88 8.25 180.58 1.49 17.37 16 6 Cl 0.05 1.65 29.30 -2.72 -0.08 1.57 16 7 N -0.60 -25.96 8.82 -193.21 -1.70 -27.66 16 8 C 0.56 23.54 7.19 261.26 1.88 25.42 16 9 N -0.46 -19.75 4.71 -708.49 -3.33 -23.09 16 10 C 0.07 2.45 5.33 86.33 0.46 2.91 16 11 C -0.11 -3.38 6.09 30.65 0.19 -3.19 16 12 C -0.11 -4.30 5.23 30.67 0.16 -4.14 16 13 C 0.05 2.38 2.26 -11.49 -0.03 2.35 16 14 H 0.00 0.11 8.14 -2.38 -0.02 0.10 16 15 C -0.53 -29.09 8.57 25.60 0.22 -28.87 16 16 H 0.06 3.22 7.75 -2.91 -0.02 3.20 16 17 C 0.02 0.93 5.30 84.65 0.45 1.38 16 18 N -0.91 -53.62 11.33 21.45 0.24 -53.38 16 19 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 C 0.09 4.68 3.69 86.32 0.32 5.00 16 24 N -0.56 -20.87 9.77 -198.73 -1.94 -22.81 16 25 H 0.09 1.31 8.13 -2.40 -0.02 1.29 16 26 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 27 H 0.15 0.87 8.14 -2.40 -0.02 0.85 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 3.14 7.58 -2.39 -0.02 3.12 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.09 5.04 5.65 -2.39 -0.01 5.02 16 36 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 Total: -1.00 -65.66 327.12 0.89 -64.76 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.10 Total: 5.21 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 7.65 Total: 29.78 kcal Atomic # 7 Polarization: -138.64 SS G_CDS: -8.51 Total: -147.15 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.29 Total: 0.10 kcal Atomic # 17 Polarization: 1.65 SS G_CDS: -0.08 Total: 1.57 kcal Total: -65.66 0.89 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.158 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds