Wall clock time and date at job start Tue Mar 31 2020 10:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48497 * 109.47366 * 240.00577 * 3 2 1 5 5 H 1.48502 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47207 * 120.00069 * 3 2 1 7 7 C 1.40067 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99654 * 163.66037 * 7 2 1 9 9 C 1.40897 * 120.00310 * 343.65236 * 7 2 1 10 10 C 1.40272 * 120.69908 * 335.00141 * 9 7 2 11 11 C 1.40228 * 118.13885 * 180.02562 * 10 9 7 12 12 C 1.40847 * 120.57417 * 179.97438 * 11 10 9 13 13 C 1.36135 * 119.70926 * 180.02562 * 12 11 10 14 14 C 1.39299 * 120.76941 * 359.97438 * 13 12 11 15 15 C 1.36277 * 121.07059 * 0.03922 * 14 13 12 16 16 C 1.40438 * 119.96909 * 359.96479 * 15 14 13 17 17 N 1.34026 * 120.11999 * 179.97438 * 16 15 14 18 18 C 1.31366 * 121.96840 * 179.97438 * 17 16 15 19 19 N 1.38088 * 119.76911 * 179.97438 * 18 17 16 20 20 C 1.46502 * 119.99715 * 359.97438 * 19 18 17 21 21 H 1.09006 * 109.23362 * 34.30177 * 20 19 18 22 22 C 1.52964 * 109.24907 * 153.75394 * 20 19 18 23 23 C 1.53945 * 106.95215 * 156.48566 * 22 20 19 24 24 S 1.81921 * 104.34164 * 327.08039 * 23 22 20 25 25 C 1.50443 * 109.24841 * 274.84948 * 20 19 18 26 26 O 1.21328 * 125.75734 * 37.84624 * 25 20 19 27 27 H 0.96999 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.92516 * 359.97438 * 10 9 7 29 29 H 1.07998 * 120.14543 * 0.04363 * 12 11 10 30 30 H 1.07995 * 119.61707 * 179.97438 * 13 12 11 31 31 H 1.08000 * 119.46462 * 180.02562 * 14 13 12 32 32 H 1.08001 * 120.01962 * 179.97438 * 15 14 13 33 33 H 0.96991 * 120.00172 * 179.97438 * 19 18 17 34 34 H 1.09005 * 109.96997 * 275.78271 * 22 20 19 35 35 H 1.09004 * 109.96902 * 37.04881 * 22 20 19 36 36 H 1.08999 * 110.42037 * 208.39867 * 23 22 20 37 37 H 1.08996 * 110.62929 * 85.87069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2770 2.7464 0.0006 6 1 3.0957 1.6963 1.2125 7 6 2.0082 -1.2131 -0.0005 8 1 3.0555 -1.2318 -0.2637 9 6 1.3464 -2.4087 0.3424 10 6 0.2068 -2.3874 1.1599 11 6 -0.4091 -3.6090 1.4679 12 6 -1.5559 -3.6472 2.2847 13 6 -2.1394 -4.8430 2.5729 14 6 -1.6158 -6.0313 2.0687 15 6 -0.5076 -6.0310 1.2757 16 6 0.1248 -4.8189 0.9543 17 7 1.2152 -4.8152 0.1751 18 6 1.8349 -3.7030 -0.1486 19 7 2.9553 -3.7520 -0.9543 20 6 3.4493 -5.0412 -1.4445 21 1 2.6033 -5.7042 -1.6262 22 6 4.2108 -4.8249 -2.7533 23 6 5.1797 -6.0109 -2.9102 24 16 5.6517 -6.4356 -1.2054 25 6 4.3470 -5.6559 -0.4055 26 8 4.1781 -5.6085 0.7951 27 1 -0.4849 0.8401 0.0004 28 1 -0.1848 -1.4562 1.5421 29 1 -1.9707 -2.7320 2.6804 30 1 -3.0184 -4.8706 3.1997 31 1 -2.0959 -6.9680 2.3104 32 1 -0.1158 -6.9624 0.8943 33 1 3.4153 -2.9329 -1.1957 34 1 3.5132 -4.8026 -3.5906 35 1 4.7695 -3.8900 -2.7088 36 1 6.0564 -5.7122 -3.4848 37 1 4.6808 -6.8537 -3.3885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167951486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:00 Heat of formation + Delta-G solvation = 13.321874 kcal Electronic energy + Delta-G solvation = -23232.591764 eV Core-core repulsion = 19872.366546 eV Total energy + Delta-G solvation = -3360.225218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.55873 -38.80627 -36.87839 -35.61232 -34.13670 -32.57161 -31.52730 -29.40785 -28.44242 -26.83586 -25.55062 -24.15179 -22.21366 -21.73924 -20.97643 -20.28285 -18.22977 -17.41286 -17.06601 -16.54465 -16.18607 -15.64750 -15.16411 -14.77390 -14.35562 -14.13361 -13.94596 -13.58896 -13.37018 -13.11471 -13.02921 -12.93296 -12.55033 -12.28804 -11.85770 -11.64035 -11.36673 -11.28476 -11.21383 -10.92224 -10.78940 -10.77430 -10.44154 -9.94147 -9.73453 -9.52134 -8.86708 -8.62711 -8.46202 -8.24792 -7.26763 -6.98772 -6.66684 -4.47221 1.36571 1.77373 1.81306 2.04379 2.23877 2.87789 2.94080 2.96880 3.49035 3.71488 3.75339 3.99953 4.22487 4.58922 4.71675 4.74228 4.81251 5.25042 5.34550 5.57648 5.59754 5.67998 5.78295 5.80130 5.86202 6.15118 6.25742 6.42850 6.50822 6.78400 6.89383 7.06708 7.18876 7.25538 7.39723 7.46755 7.60197 7.76233 7.80047 8.00841 8.14802 8.37932 8.51990 8.64401 9.40795 9.94583 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.006140 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.971362 B = 4559.352535 C = 7090.245005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.078 0.922 9 C 0.050 3.950 10 C -0.182 4.182 11 C -0.064 4.064 12 C -0.119 4.119 13 C -0.138 4.138 14 C -0.165 4.165 15 C -0.085 4.085 16 C 0.084 3.916 17 N -0.548 5.548 18 C 0.380 3.620 19 N -0.701 5.701 20 C 0.107 3.893 21 H 0.127 0.873 22 C -0.128 4.128 23 C -0.082 4.082 24 S -0.220 6.220 25 C 0.358 3.642 26 O -0.380 6.380 27 H 0.286 0.714 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 -4.902 -6.785 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.472 4.472 8 H 0.096 0.904 9 C 0.043 3.957 10 C -0.208 4.208 11 C -0.067 4.067 12 C -0.139 4.139 13 C -0.156 4.156 14 C -0.185 4.185 15 C -0.105 4.105 16 C -0.034 4.034 17 N -0.267 5.267 18 C 0.128 3.872 19 N -0.340 5.340 20 C -0.009 4.009 21 H 0.144 0.856 22 C -0.167 4.167 23 C -0.231 4.231 24 S 0.011 5.989 25 C 0.119 3.881 26 O -0.252 6.252 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.250 0.750 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.598 -6.349 -5.963 10.927 hybrid contribution -0.837 2.469 -0.189 2.614 sum 5.761 -3.880 -6.152 9.278 Atomic orbital electron populations 1.69777 1.07621 1.29827 1.32738 1.25892 0.94818 1.01346 0.92547 0.86297 0.80132 0.79912 0.80119 1.18855 1.20079 1.18645 1.19235 0.97015 0.90864 1.40101 0.90370 1.18883 0.94384 0.89787 0.92611 1.21259 1.00399 0.95606 1.03508 1.18644 0.95833 0.94220 0.98013 1.20843 0.96154 0.97016 0.99840 1.20452 1.00239 0.92979 1.01976 1.20311 0.98559 0.97131 1.02477 1.20408 0.95515 0.95958 0.98582 1.17997 0.93526 0.92360 0.99519 1.66866 1.11433 1.28365 1.20036 1.20020 0.87274 0.90103 0.89849 1.43773 1.29490 1.05620 1.55132 1.21873 0.98105 0.89906 0.91046 0.85568 1.22225 0.98416 0.98668 0.97380 1.23965 1.03190 1.01543 0.94389 1.86196 1.38274 1.67923 1.06500 1.26685 0.87014 0.80387 0.94026 1.90636 1.68606 1.50990 1.14993 0.90326 0.85041 0.87422 0.87995 0.87869 0.87462 0.74966 0.87692 0.89084 0.86815 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.62 10.94 55.55 0.61 -18.01 16 2 C 0.07 1.69 5.19 -17.31 -0.09 1.60 16 3 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.44 -10.47 8.58 -37.89 -0.33 -10.79 16 8 H 0.08 1.69 6.78 -52.49 -0.36 1.33 16 9 C 0.05 1.25 5.73 -104.67 -0.60 0.65 16 10 C -0.18 -4.68 8.52 -38.07 -0.32 -5.01 16 11 C -0.06 -1.57 5.74 -106.77 -0.61 -2.19 16 12 C -0.12 -2.60 9.75 -39.35 -0.38 -2.99 16 13 C -0.14 -2.68 9.96 -39.94 -0.40 -3.08 16 14 C -0.16 -3.19 9.95 -39.89 -0.40 -3.59 16 15 C -0.08 -1.83 9.94 -39.46 -0.39 -2.22 16 16 C 0.08 2.05 6.60 -84.69 -0.56 1.49 16 17 N -0.55 -13.12 9.06 -8.55 -0.08 -13.20 16 18 C 0.38 8.83 7.46 -153.66 -1.15 7.68 16 19 N -0.70 -12.96 5.06 -53.41 -0.27 -13.23 16 20 C 0.11 1.61 2.84 -69.22 -0.20 1.42 16 21 H 0.13 2.05 7.49 -51.93 -0.39 1.66 16 22 C -0.13 -1.24 6.17 -26.26 -0.16 -1.40 16 23 C -0.08 -0.67 7.22 37.65 0.27 -0.40 16 24 S -0.22 -2.84 22.85 -107.50 -2.46 -5.30 16 25 C 0.36 6.09 7.44 35.88 0.27 6.36 16 26 O -0.38 -8.24 17.77 5.52 0.10 -8.14 16 27 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 28 H 0.13 3.46 6.24 -52.48 -0.33 3.13 16 29 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.41 6.99 6.75 -40.82 -0.28 6.72 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -29.90 327.77 -11.09 -40.99 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.85 Total: 12.38 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -5.05 Total: -12.47 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.26 Total: -44.44 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.10 Total: -8.14 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.46 Total: -5.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.90 -11.09 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167951486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.311 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds