Wall clock time and date at job start Tue Mar 31 2020 10:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38227 * 120.41721 * 2 1 4 4 N 1.31851 * 120.76453 * 179.74019 * 3 2 1 5 5 C 1.31891 * 121.72549 * 0.26267 * 4 3 2 6 6 C 1.50697 * 119.61997 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.46790 * 89.99337 * 6 5 4 8 8 C 1.42899 * 113.99865 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47056 * 30.00862 * 8 7 6 10 10 C 1.50701 * 109.47093 * 150.00234 * 8 7 6 11 11 H 1.07995 * 120.00011 * 5.45972 * 10 8 7 12 12 C 1.37877 * 120.00096 * 185.45623 * 10 8 7 13 13 N 1.31509 * 119.99893 * 9.49337 * 12 10 8 14 14 Si 1.86803 * 120.00124 * 189.49465 * 12 10 8 15 15 H 1.48498 * 109.47392 * 84.99193 * 14 12 10 16 16 H 1.48498 * 109.46978 * 204.99547 * 14 12 10 17 17 H 1.48500 * 109.47029 * 324.99446 * 14 12 10 18 18 C 1.52996 * 109.47564 * 270.00619 * 8 7 6 19 19 Cl 1.80296 * 109.47365 * 66.52972 * 18 8 7 20 20 C 1.38186 * 120.76288 * 359.97438 * 5 4 3 21 21 C 1.50701 * 120.41777 * 180.02562 * 20 5 4 22 22 C 1.38624 * 120.41839 * 180.24826 * 2 1 3 23 23 N 1.48017 * 120.79460 * 359.97438 * 22 2 1 24 24 O 1.21793 * 119.99769 * 270.27006 * 23 22 2 25 25 O 1.21796 * 119.99928 * 90.27114 * 23 22 2 26 26 H 1.09004 * 109.46915 * 90.00122 * 1 2 3 27 27 H 1.09006 * 109.46910 * 209.99623 * 1 2 3 28 28 H 1.08994 * 109.47160 * 329.99708 * 1 2 3 29 29 H 1.08003 * 119.61535 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47458 * 209.99334 * 6 5 4 31 31 H 1.09003 * 109.46764 * 330.00110 * 6 5 4 32 32 H 0.97007 * 120.00087 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.47465 * 186.53204 * 18 8 7 34 34 H 1.09001 * 109.46882 * 306.52979 * 18 8 7 35 35 H 1.09000 * 109.47183 * 90.00249 * 21 20 5 36 36 H 1.09004 * 109.46722 * 210.00547 * 21 20 5 37 37 H 1.09006 * 109.47001 * 330.00272 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 0.0051 5 6 4.2257 0.0824 0.0053 6 6 5.7313 0.1469 0.0119 7 8 6.2013 0.1640 1.3613 8 6 7.6241 0.2242 1.4804 9 1 8.0381 0.7579 0.6249 10 6 7.9918 0.9481 2.7499 11 1 7.2202 1.2469 3.4440 12 6 9.3132 1.2290 3.0254 13 7 10.2321 1.0366 2.1045 14 14 9.7983 1.8830 4.7066 15 1 9.9926 0.7466 5.6426 16 1 11.0634 2.6521 4.5924 17 1 8.7244 2.7701 5.2214 18 6 8.1931 -1.1955 1.5197 19 17 7.9204 -1.9967 -0.0723 20 6 3.5948 -1.1470 0.0006 21 6 4.4027 -2.4192 0.0014 22 6 2.2089 -1.1954 -0.0052 23 7 1.4961 -2.4926 -0.0102 24 8 1.1990 -3.0283 1.0425 25 8 1.2068 -3.0244 -1.0671 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6674 2.1276 0.0004 30 1 6.1346 -0.7254 -0.5023 31 1 6.0583 1.0530 -0.4983 32 1 11.1618 1.2345 2.2982 33 1 9.2625 -1.1528 1.7265 34 1 7.6940 -1.7653 2.3035 35 1 4.5935 -2.7278 1.0292 36 1 3.8482 -3.2020 -0.5162 37 1 5.3509 -2.2478 -0.5084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224185334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:27 Heat of formation + Delta-G solvation = -29.811850 kcal Electronic energy + Delta-G solvation = -24088.679546 eV Core-core repulsion = 20281.398189 eV Total energy + Delta-G solvation = -3807.281357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.53065 -40.71210 -37.46194 -36.68369 -35.08088 -34.54996 -34.27269 -33.17600 -30.01109 -28.99230 -28.19258 -26.43004 -25.43524 -25.06509 -22.57968 -21.48267 -21.12878 -19.06775 -18.98529 -18.48795 -16.85276 -16.55492 -16.12201 -15.45808 -15.00674 -14.90841 -14.57812 -14.40615 -13.97387 -13.65873 -13.27203 -13.04973 -12.83546 -12.78812 -12.56185 -12.32713 -11.94736 -11.85622 -11.63820 -11.52524 -11.30694 -11.11339 -11.07644 -10.90653 -10.49358 -10.35158 -10.17099 -9.84263 -9.58231 -9.53782 -9.14597 -8.67714 -8.38826 -6.41197 -4.45670 0.32200 0.32926 0.54151 1.08947 3.10109 3.10943 3.21087 3.22677 3.27655 3.80729 3.99282 4.09418 4.16427 4.28959 4.60042 4.73477 4.84612 4.92743 4.98864 5.02608 5.26948 5.37937 5.38755 5.46699 5.53557 5.75536 5.85869 5.95705 6.04666 6.14164 6.24434 6.28390 6.60912 7.10456 7.37481 7.54821 7.56539 7.79908 8.14527 8.69880 9.21060 10.66887 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.003863 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.741495 B = 7246.568503 C = 7999.963099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 C 0.110 3.890 4 N -0.430 5.430 5 C 0.157 3.843 6 C 0.095 3.905 7 O -0.375 6.375 8 C 0.214 3.786 9 H 0.043 0.957 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.026 4.026 19 Cl -0.248 7.248 20 C -0.063 4.063 21 C -0.132 4.132 22 C 0.008 3.992 23 N 0.022 4.978 24 O -0.133 6.133 25 O -0.138 6.138 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.270 0.730 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 -2.733 -5.317 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 C -0.048 4.048 4 N -0.138 5.138 5 C 0.019 3.981 6 C 0.017 3.983 7 O -0.295 6.295 8 C 0.157 3.843 9 H 0.061 0.939 10 C -0.557 4.557 11 H 0.092 0.908 12 C -0.139 4.139 13 N -0.520 5.520 14 Si 0.734 3.266 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.088 4.088 19 Cl -0.222 7.222 20 C -0.067 4.067 21 C -0.189 4.189 22 C -0.079 4.079 23 N 0.553 4.447 24 O -0.357 6.357 25 O -0.360 6.360 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.195 0.805 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.722 -1.296 -5.298 13.842 hybrid contribution -0.130 -0.857 0.625 1.069 sum -12.852 -2.153 -4.673 13.844 Atomic orbital electron populations 1.20916 0.88575 1.04591 1.03938 1.20715 0.98501 0.91306 0.99340 1.22856 0.89476 0.96611 0.95894 1.67610 1.07755 1.30846 1.07548 1.21260 0.97386 0.85720 0.93768 1.21566 0.85127 1.02987 0.88597 1.87929 1.25351 1.94906 1.21283 1.20088 0.75149 0.89718 0.99338 0.93893 1.20961 0.92805 1.37201 1.04761 0.90843 1.24990 0.96088 0.94902 0.97881 1.69949 1.02054 1.47452 1.32573 0.86334 0.78093 0.79111 0.83039 1.20127 1.20908 1.19489 1.25878 1.05798 0.96365 0.80789 1.98601 1.97001 1.84524 1.42083 1.20593 0.90140 0.99255 0.96679 1.21146 1.00981 0.91817 1.04934 1.21009 0.92306 0.83408 1.11217 1.43480 0.98865 1.01908 1.00482 1.94586 1.55458 1.64707 1.20928 1.94564 1.55943 1.65105 1.20402 0.89357 0.91256 0.89043 0.80492 0.89735 0.91498 0.92020 0.86992 0.90449 0.88519 0.91603 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.82 36.01 0.35 -0.68 16 2 C -0.10 -1.13 5.90 -104.48 -0.62 -1.74 16 3 C 0.11 1.32 10.86 -17.55 -0.19 1.13 16 4 N -0.43 -6.76 10.27 -9.47 -0.10 -6.86 16 5 C 0.16 2.62 6.41 -82.59 -0.53 2.09 16 6 C 0.09 1.73 5.43 36.00 0.20 1.93 16 7 O -0.38 -8.22 9.94 -35.23 -0.35 -8.57 16 8 C 0.21 5.01 2.22 -27.88 -0.06 4.94 16 9 H 0.04 1.09 7.73 -51.93 -0.40 0.69 16 10 C -0.52 -13.41 8.81 -34.44 -0.30 -13.72 16 11 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 12 C 0.07 1.66 5.14 -17.82 -0.09 1.57 16 13 N -0.88 -23.04 12.17 55.43 0.67 -22.36 16 14 Si 0.91 19.85 29.55 -169.99 -5.02 14.83 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 C -0.03 -0.55 6.23 37.16 0.23 -0.31 16 19 Cl -0.25 -4.55 25.07 -51.86 -1.30 -5.85 16 20 C -0.06 -0.97 5.90 -104.48 -0.62 -1.58 16 21 C -0.13 -1.90 9.41 36.01 0.34 -1.56 16 22 C 0.01 0.12 6.15 -79.64 -0.49 -0.37 16 23 N 0.02 0.32 2.50 34.11 0.09 0.41 16 24 O -0.13 -2.01 19.21 -29.46 -0.57 -2.57 16 25 O -0.14 -2.00 19.22 -29.46 -0.57 -2.56 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.65 7.49 -51.93 -0.39 0.26 16 28 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.18 1.41 8.06 -52.48 -0.42 0.98 16 30 H 0.09 1.46 3.17 -51.93 -0.16 1.30 16 31 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.11 2.58 6.78 -51.93 -0.35 2.22 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 37 H 0.10 1.49 4.78 -51.93 -0.25 1.24 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -27.34 333.78 -7.91 -35.26 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.02 Total: 1.56 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.78 Total: -8.31 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.66 Total: -28.82 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.48 Total: -13.71 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 17 Polarization: -4.55 SS G_CDS: -1.30 Total: -5.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.34 -7.91 -35.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224185334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.447 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds