Wall clock time and date at job start Tue Mar 31 2020 10:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38227 * 120.41721 * 2 1 4 4 N 1.31851 * 120.76453 * 179.74019 * 3 2 1 5 5 C 1.31891 * 121.72549 * 0.26267 * 4 3 2 6 6 C 1.50697 * 119.61997 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.46790 * 89.99337 * 6 5 4 8 8 C 1.42899 * 113.99865 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47056 * 30.00862 * 8 7 6 10 10 C 1.50701 * 109.47093 * 150.00234 * 8 7 6 11 11 H 1.07995 * 120.00011 * 5.45972 * 10 8 7 12 12 C 1.37877 * 120.00096 * 185.45623 * 10 8 7 13 13 N 1.31509 * 119.99893 * 9.49337 * 12 10 8 14 14 Si 1.86803 * 120.00124 * 189.49465 * 12 10 8 15 15 H 1.48498 * 109.47392 * 84.99193 * 14 12 10 16 16 H 1.48498 * 109.46978 * 204.99547 * 14 12 10 17 17 H 1.48500 * 109.47029 * 324.99446 * 14 12 10 18 18 C 1.52996 * 109.47564 * 270.00619 * 8 7 6 19 19 Cl 1.80296 * 109.47365 * 66.52972 * 18 8 7 20 20 C 1.38186 * 120.76288 * 359.97438 * 5 4 3 21 21 C 1.50701 * 120.41777 * 180.02562 * 20 5 4 22 22 C 1.38624 * 120.41839 * 180.24826 * 2 1 3 23 23 N 1.48017 * 120.79460 * 359.97438 * 22 2 1 24 24 O 1.21793 * 119.99769 * 270.27006 * 23 22 2 25 25 O 1.21796 * 119.99928 * 90.27114 * 23 22 2 26 26 H 1.09004 * 109.46915 * 90.00122 * 1 2 3 27 27 H 1.09006 * 109.46910 * 209.99623 * 1 2 3 28 28 H 1.08994 * 109.47160 * 329.99708 * 1 2 3 29 29 H 1.08003 * 119.61535 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47458 * 209.99334 * 6 5 4 31 31 H 1.09003 * 109.46764 * 330.00110 * 6 5 4 32 32 H 0.97007 * 120.00087 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.47465 * 186.53204 * 18 8 7 34 34 H 1.09001 * 109.46882 * 306.52979 * 18 8 7 35 35 H 1.09000 * 109.47183 * 90.00249 * 21 20 5 36 36 H 1.09004 * 109.46722 * 210.00547 * 21 20 5 37 37 H 1.09006 * 109.47001 * 330.00272 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 0.0051 5 6 4.2257 0.0824 0.0053 6 6 5.7313 0.1469 0.0119 7 8 6.2013 0.1640 1.3613 8 6 7.6241 0.2242 1.4804 9 1 8.0381 0.7579 0.6249 10 6 7.9918 0.9481 2.7499 11 1 7.2202 1.2469 3.4440 12 6 9.3132 1.2290 3.0254 13 7 10.2321 1.0366 2.1045 14 14 9.7983 1.8830 4.7066 15 1 9.9926 0.7466 5.6426 16 1 11.0634 2.6521 4.5924 17 1 8.7244 2.7701 5.2214 18 6 8.1931 -1.1955 1.5197 19 17 7.9204 -1.9967 -0.0723 20 6 3.5948 -1.1470 0.0006 21 6 4.4027 -2.4192 0.0014 22 6 2.2089 -1.1954 -0.0052 23 7 1.4961 -2.4926 -0.0102 24 8 1.1990 -3.0283 1.0425 25 8 1.2068 -3.0244 -1.0671 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6674 2.1276 0.0004 30 1 6.1346 -0.7254 -0.5023 31 1 6.0583 1.0530 -0.4983 32 1 11.1618 1.2345 2.2982 33 1 9.2625 -1.1528 1.7265 34 1 7.6940 -1.7653 2.3035 35 1 4.5935 -2.7278 1.0292 36 1 3.8482 -3.2020 -0.5162 37 1 5.3509 -2.2478 -0.5084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224185334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:26 Heat of formation + Delta-G solvation = -43.867528 kcal Electronic energy + Delta-G solvation = -24089.289046 eV Core-core repulsion = 20281.398189 eV Total energy + Delta-G solvation = -3807.890857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.64766 -41.82924 -39.10524 -37.82522 -36.65880 -35.81937 -35.38063 -34.92845 -31.57176 -30.18723 -29.45179 -27.52172 -27.22306 -26.36197 -23.70738 -22.99816 -22.50584 -20.23893 -20.11514 -19.60822 -18.71053 -17.92375 -17.58437 -16.75995 -16.40829 -16.14415 -15.93240 -15.81232 -15.35769 -14.71678 -14.61095 -14.26322 -14.15128 -13.89041 -13.77781 -13.64923 -13.32908 -13.15467 -13.00882 -12.91604 -12.80421 -12.69821 -12.51565 -12.46599 -12.19306 -11.79644 -11.46255 -11.38337 -11.23064 -10.98512 -10.61111 -10.22090 -10.05741 -8.35124 -6.47191 -0.83230 -0.76113 -0.53463 -0.02564 1.37589 1.43465 1.51193 1.54880 1.99065 2.34239 2.71667 2.93004 2.98068 3.07188 3.25907 3.39757 3.68191 3.74407 3.86929 4.16824 4.17936 4.26150 4.39487 4.41669 4.42642 4.47975 4.56346 4.60080 4.73784 4.80211 4.86335 4.88055 5.16325 5.26787 5.56113 5.90196 6.21727 6.35802 6.47003 6.74170 7.24107 8.72736 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.003863 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.741495 B = 7246.568503 C = 7999.963099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C 0.117 3.883 4 N -0.455 5.455 5 C 0.133 3.867 6 C 0.097 3.903 7 O -0.389 6.389 8 C 0.220 3.780 9 H 0.017 0.983 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.030 3.970 13 N -0.906 5.906 14 Si 0.967 3.033 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.271 1.271 18 C -0.017 4.017 19 Cl -0.221 7.221 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.007 4.007 23 N 0.027 4.973 24 O -0.151 6.151 25 O -0.132 6.132 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.223 0.777 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.273 0.727 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 -2.320 -5.264 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C -0.042 4.042 4 N -0.163 5.163 5 C -0.005 4.005 6 C 0.020 3.980 7 O -0.309 6.309 8 C 0.163 3.837 9 H 0.034 0.966 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.172 4.172 13 N -0.543 5.543 14 Si 0.791 3.209 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.196 1.196 18 C -0.080 4.080 19 Cl -0.195 7.195 20 C -0.077 4.077 21 C -0.184 4.184 22 C -0.095 4.095 23 N 0.557 4.443 24 O -0.370 6.370 25 O -0.357 6.357 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.239 0.761 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.519 -0.907 -5.224 15.457 hybrid contribution 0.271 -0.964 0.470 1.106 sum -14.247 -1.871 -4.754 15.135 Atomic orbital electron populations 1.21095 0.85644 1.05756 1.05476 1.21234 1.00462 0.90189 0.96182 1.23609 0.88224 0.98373 0.93963 1.67555 1.09737 1.30747 1.08254 1.20880 0.96358 0.86687 0.96550 1.21564 0.86973 1.02744 0.86763 1.87881 1.24281 1.94979 1.23750 1.19814 0.76065 0.90403 0.97380 0.96560 1.21172 0.93063 1.38470 1.05567 0.92192 1.25670 0.95792 0.94872 1.00899 1.70025 1.02342 1.47927 1.34029 0.85429 0.77676 0.78686 0.79141 1.19267 1.20289 1.19605 1.25417 1.04408 0.95715 0.82419 1.98597 1.96921 1.83799 1.40140 1.20532 0.90906 0.98859 0.97359 1.21081 1.00827 0.91960 1.04571 1.21187 0.92133 0.83976 1.12207 1.43505 0.98617 1.01896 1.00284 1.94592 1.56296 1.65049 1.21097 1.94553 1.55657 1.65087 1.20410 0.87372 0.92203 0.85770 0.76053 0.89092 0.92521 0.91731 0.88722 0.89768 0.89108 0.90812 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.82 71.24 0.70 -0.89 16 2 C -0.08 -1.61 5.90 -19.77 -0.12 -1.73 16 3 C 0.12 2.48 10.86 84.69 0.92 3.40 16 4 N -0.45 -13.87 10.27 -183.88 -1.89 -15.76 16 5 C 0.13 4.42 6.41 42.54 0.27 4.69 16 6 C 0.10 3.64 5.43 71.23 0.39 4.03 16 7 O -0.39 -17.58 9.94 -148.98 -1.48 -19.06 16 8 C 0.22 10.66 2.22 29.85 0.07 10.73 16 9 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 10 C -0.55 -28.84 8.81 25.60 0.23 -28.62 16 11 H 0.06 3.26 7.83 -2.91 -0.02 3.23 16 12 C 0.03 1.51 5.14 84.66 0.44 1.95 16 13 N -0.91 -47.87 12.17 21.45 0.26 -47.61 16 14 Si 0.97 40.70 29.55 68.60 2.03 42.73 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 16 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 C -0.02 -0.72 6.23 71.98 0.45 -0.27 16 19 Cl -0.22 -8.12 25.07 -2.72 -0.07 -8.19 16 20 C -0.07 -2.22 5.90 -19.77 -0.12 -2.34 16 21 C -0.13 -3.68 9.41 71.24 0.67 -3.01 16 22 C -0.01 -0.19 6.15 36.57 0.22 0.03 16 23 N 0.03 0.75 2.50 -45.99 -0.12 0.63 16 24 O -0.15 -4.39 19.21 18.89 0.36 -4.03 16 25 O -0.13 -3.61 19.22 18.89 0.36 -3.25 16 26 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.06 0.94 7.49 -2.38 -0.02 0.93 16 28 H 0.12 0.84 8.09 -2.39 -0.02 0.82 16 29 H 0.22 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.09 3.23 3.17 -2.39 -0.01 3.22 16 31 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 32 H 0.27 13.62 8.31 -92.70 -0.77 12.84 16 33 H 0.09 4.45 6.78 -2.38 -0.02 4.44 16 34 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 1.94 7.49 -2.38 -0.02 1.93 16 37 H 0.10 2.83 4.78 -2.38 -0.01 2.82 16 Total: -1.00 -59.82 333.78 4.69 -55.13 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.12 Total: 11.42 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 4.12 Total: -12.02 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -1.74 Total: -62.74 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.76 Total: -26.33 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 17 Polarization: -8.12 SS G_CDS: -0.07 Total: -8.19 kcal Total: -59.82 4.69 -55.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224185334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.261 kcal (2) G-P(sol) polarization free energy of solvation -59.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds