Wall clock time and date at job start Tue Mar 31 2020 10:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48501 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47059 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.47295 * 59.99636 * 3 2 1 7 7 C 1.39886 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 196.42732 * 7 2 1 9 9 C 1.41216 * 120.00347 * 16.42964 * 7 2 1 10 10 C 1.40836 * 120.17874 * 205.22081 * 9 7 2 11 11 C 1.36444 * 119.80800 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18744 * 359.97438 * 11 10 9 13 13 O 1.35669 * 119.81528 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99711 * 185.24554 * 13 12 11 15 15 H 1.09001 * 110.34868 * 33.09597 * 14 13 12 16 16 C 1.54342 * 110.30425 * 155.22501 * 14 13 12 17 17 C 1.54336 * 102.57447 * 92.66856 * 16 14 13 18 18 C 1.51380 * 105.17156 * 26.25700 * 17 16 14 19 19 C 1.38511 * 130.37616 * 162.84729 * 18 17 16 20 20 C 1.38077 * 120.22979 * 179.97438 * 19 18 17 21 21 C 1.38375 * 119.92489 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 120.04737 * 180.02562 * 21 20 19 23 23 C 1.38224 * 119.90398 * 359.97438 * 21 20 19 24 24 C 1.38223 * 109.75100 * 342.80597 * 18 17 16 25 25 C 1.39314 * 120.36187 * 0.25434 * 12 11 10 26 26 C 1.36439 * 120.18583 * 359.48491 * 25 12 11 27 27 H 0.97007 * 120.00154 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.09692 * 0.04151 * 10 9 7 29 29 H 1.07997 * 119.90244 * 179.97438 * 11 10 9 30 30 H 1.09001 * 110.82499 * 334.34271 * 16 14 13 31 31 H 1.09000 * 110.82509 * 210.99442 * 16 14 13 32 32 H 1.09002 * 110.30854 * 145.17589 * 17 16 14 33 33 H 1.09000 * 110.30638 * 267.23526 * 17 16 14 34 34 H 1.07997 * 119.88329 * 359.96068 * 19 18 17 35 35 H 1.08004 * 120.03701 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.89281 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.90188 * 179.72246 * 25 12 11 38 38 H 1.08002 * 120.09382 * 180.25991 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0551 -1.2305 0.2651 9 6 1.3453 -2.4096 -0.3448 10 6 1.8203 -3.6453 0.1357 11 6 1.1744 -4.7984 -0.2031 12 6 0.0477 -4.7557 -1.0215 13 8 -0.5884 -5.9069 -1.3541 14 6 -1.6658 -5.8064 -2.2875 15 1 -1.4720 -5.0097 -3.0057 16 6 -1.8674 -7.1501 -3.0196 17 6 -2.9301 -7.8517 -2.1476 18 6 -3.6974 -6.7307 -1.4796 19 6 -4.9325 -6.7379 -0.8527 20 6 -5.4413 -5.5768 -0.3057 21 6 -4.7157 -4.4011 -0.3839 22 17 -5.3520 -2.9396 0.3034 23 6 -3.4830 -4.3925 -1.0091 24 6 -2.9717 -5.5569 -1.5572 25 6 -0.4257 -3.5379 -1.5049 26 6 0.2055 -2.3753 -1.1711 27 1 -0.4851 0.8401 0.0004 28 1 2.6931 -3.6801 0.7707 29 1 1.5375 -5.7469 0.1641 30 1 -0.9410 -7.7241 -3.0381 31 1 -2.2411 -6.9882 -4.0306 32 1 -3.5972 -8.4476 -2.7705 33 1 -2.4495 -8.4815 -1.3990 34 1 -5.4997 -7.6550 -0.7919 35 1 -6.4049 -5.5859 0.1820 36 1 -2.9166 -3.4750 -1.0697 37 1 -1.2971 -3.5139 -2.1424 38 1 -0.1654 -1.4316 -1.5433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:28 Heat of formation + Delta-G solvation = -1.044039 kcal Electronic energy + Delta-G solvation = -22945.059181 eV Core-core repulsion = 19549.874553 eV Total energy + Delta-G solvation = -3395.184628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43877 -38.42221 -36.87488 -36.16180 -34.63101 -33.22613 -31.29856 -29.61053 -29.23579 -28.72674 -26.76725 -24.77060 -22.83043 -21.84408 -21.16160 -20.78302 -19.73958 -17.51018 -17.21374 -16.65900 -15.63811 -15.34008 -15.28347 -14.64512 -14.31228 -14.15071 -13.92970 -13.52538 -13.23002 -12.89263 -12.72740 -12.49030 -12.15295 -11.84941 -11.76689 -11.55907 -11.48169 -11.21404 -11.10751 -11.07608 -10.90555 -10.76857 -10.68429 -10.49601 -9.89648 -9.78287 -9.39327 -9.03600 -8.83601 -8.40645 -7.65734 -7.01232 -6.71443 -4.25664 1.17827 1.32090 2.25351 2.75382 2.95842 3.09159 3.14130 3.19903 3.56631 3.95751 4.12333 4.43594 4.53723 4.64736 4.94814 5.01853 5.04318 5.26475 5.31466 5.56006 5.61359 5.67454 5.76526 5.84175 5.86049 6.01654 6.08005 6.09868 6.24539 6.27155 6.34745 6.62636 6.71983 6.82984 6.89673 7.06834 7.28209 7.40699 7.55337 7.89876 8.00002 8.14910 8.43409 8.64678 8.90615 8.98643 10.23005 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.004379 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.498036 B = 6392.036946 C = 8045.257815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.112 4.112 12 C -0.010 4.010 13 O -0.310 6.310 14 C 0.129 3.871 15 H 0.080 0.920 16 C -0.115 4.115 17 C -0.079 4.079 18 C -0.081 4.081 19 C -0.106 4.106 20 C -0.108 4.108 21 C -0.039 4.039 22 Cl -0.069 7.069 23 C -0.078 4.078 24 C -0.104 4.104 25 C -0.175 4.175 26 C -0.132 4.132 27 H 0.279 0.721 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -10.191 -4.506 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.131 4.131 12 C -0.053 4.053 13 O -0.225 6.225 14 C 0.071 3.929 15 H 0.098 0.902 16 C -0.153 4.153 17 C -0.115 4.115 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.065 4.065 22 Cl -0.040 7.040 23 C -0.096 4.096 24 C -0.105 4.105 25 C -0.194 4.194 26 C -0.151 4.151 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.114 0.886 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.930 -10.077 -4.358 14.803 hybrid contribution 0.025 1.293 0.217 1.311 sum -9.904 -8.784 -4.140 13.871 Atomic orbital electron populations 1.69836 1.07450 1.28935 1.36346 1.25861 0.94724 1.01166 0.92445 0.86299 0.80969 0.81184 0.78492 1.18465 1.19814 1.20071 1.19502 0.97574 0.91030 1.41135 0.90509 1.17598 0.91847 0.92173 0.89786 1.20597 1.03015 0.92340 1.05606 1.19599 0.95157 0.97634 1.00698 1.18573 0.97065 0.83923 1.05782 1.85936 1.44929 1.31215 1.60467 1.21537 0.83116 0.98220 0.90002 0.90200 1.22365 0.99885 0.94991 0.98010 1.21053 0.96290 0.95781 0.98415 1.20681 0.94192 0.95786 0.97519 1.20472 0.95181 0.97760 0.99004 1.20907 1.00098 0.91067 1.00564 1.20761 0.95811 0.88254 1.01692 1.98372 1.86378 1.35846 1.83448 1.20874 0.93565 0.99378 0.95790 1.21055 0.96849 0.92975 0.99629 1.20640 1.01392 0.92983 1.04360 1.20961 0.98298 0.96382 0.99470 0.91045 0.88262 0.88610 0.89119 0.89640 0.90472 0.89592 0.85455 0.85011 0.84120 0.88640 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 10.91 55.54 0.61 -20.11 16 2 C 0.07 1.88 5.16 -17.34 -0.09 1.79 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.24 9.04 -37.83 -0.34 -12.59 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.09 2.34 5.57 -106.80 -0.60 1.75 16 10 C -0.20 -4.81 9.74 -39.25 -0.38 -5.20 16 11 C -0.11 -2.59 9.92 -39.83 -0.40 -2.99 16 12 C -0.01 -0.24 6.68 -38.78 -0.26 -0.50 16 13 O -0.31 -6.18 9.82 -18.71 -0.18 -6.36 16 14 C 0.13 2.08 2.75 -26.70 -0.07 2.01 16 15 H 0.08 1.31 6.19 -51.93 -0.32 0.99 16 16 C -0.12 -1.37 6.79 -25.33 -0.17 -1.54 16 17 C -0.08 -0.86 6.77 -26.85 -0.18 -1.05 16 18 C -0.08 -1.10 6.14 -104.19 -0.64 -1.74 16 19 C -0.11 -1.28 10.04 -39.54 -0.40 -1.67 16 20 C -0.11 -1.38 9.83 -39.59 -0.39 -1.77 16 21 C -0.04 -0.59 6.32 -39.54 -0.25 -0.84 16 22 Cl -0.07 -1.04 28.96 -51.86 -1.50 -2.55 16 23 C -0.08 -1.33 9.22 -39.50 -0.36 -1.69 16 24 C -0.10 -1.68 5.68 -104.06 -0.59 -2.27 16 25 C -0.18 -4.02 7.73 -39.83 -0.31 -4.33 16 26 C -0.13 -3.38 8.64 -39.25 -0.34 -3.72 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.14 2.67 6.07 -52.49 -0.32 2.35 16 37 H 0.10 1.98 4.57 -52.49 -0.24 1.74 16 38 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -28.33 330.57 -11.03 -39.36 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.13 Total: 7.30 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -5.77 Total: -36.36 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.61 Total: -20.11 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.18 Total: -6.36 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.33 -11.03 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.318 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds