Wall clock time and date at job start Tue Mar 31 2020 10:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48501 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47059 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.47295 * 59.99636 * 3 2 1 7 7 C 1.39886 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 196.42732 * 7 2 1 9 9 C 1.41216 * 120.00347 * 16.42964 * 7 2 1 10 10 C 1.40836 * 120.17874 * 205.22081 * 9 7 2 11 11 C 1.36444 * 119.80800 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18744 * 359.97438 * 11 10 9 13 13 O 1.35669 * 119.81528 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99711 * 185.24554 * 13 12 11 15 15 H 1.09001 * 110.34868 * 33.09597 * 14 13 12 16 16 C 1.54342 * 110.30425 * 155.22501 * 14 13 12 17 17 C 1.54336 * 102.57447 * 92.66856 * 16 14 13 18 18 C 1.51380 * 105.17156 * 26.25700 * 17 16 14 19 19 C 1.38511 * 130.37616 * 162.84729 * 18 17 16 20 20 C 1.38077 * 120.22979 * 179.97438 * 19 18 17 21 21 C 1.38375 * 119.92489 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 120.04737 * 180.02562 * 21 20 19 23 23 C 1.38224 * 119.90398 * 359.97438 * 21 20 19 24 24 C 1.38223 * 109.75100 * 342.80597 * 18 17 16 25 25 C 1.39314 * 120.36187 * 0.25434 * 12 11 10 26 26 C 1.36439 * 120.18583 * 359.48491 * 25 12 11 27 27 H 0.97007 * 120.00154 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.09692 * 0.04151 * 10 9 7 29 29 H 1.07997 * 119.90244 * 179.97438 * 11 10 9 30 30 H 1.09001 * 110.82499 * 334.34271 * 16 14 13 31 31 H 1.09000 * 110.82509 * 210.99442 * 16 14 13 32 32 H 1.09002 * 110.30854 * 145.17589 * 17 16 14 33 33 H 1.09000 * 110.30638 * 267.23526 * 17 16 14 34 34 H 1.07997 * 119.88329 * 359.96068 * 19 18 17 35 35 H 1.08004 * 120.03701 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.89281 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.90188 * 179.72246 * 25 12 11 38 38 H 1.08002 * 120.09382 * 180.25991 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0551 -1.2305 0.2651 9 6 1.3453 -2.4096 -0.3448 10 6 1.8203 -3.6453 0.1357 11 6 1.1744 -4.7984 -0.2031 12 6 0.0477 -4.7557 -1.0215 13 8 -0.5884 -5.9069 -1.3541 14 6 -1.6658 -5.8064 -2.2875 15 1 -1.4720 -5.0097 -3.0057 16 6 -1.8674 -7.1501 -3.0196 17 6 -2.9301 -7.8517 -2.1476 18 6 -3.6974 -6.7307 -1.4796 19 6 -4.9325 -6.7379 -0.8527 20 6 -5.4413 -5.5768 -0.3057 21 6 -4.7157 -4.4011 -0.3839 22 17 -5.3520 -2.9396 0.3034 23 6 -3.4830 -4.3925 -1.0091 24 6 -2.9717 -5.5569 -1.5572 25 6 -0.4257 -3.5379 -1.5049 26 6 0.2055 -2.3753 -1.1711 27 1 -0.4851 0.8401 0.0004 28 1 2.6931 -3.6801 0.7707 29 1 1.5375 -5.7469 0.1641 30 1 -0.9410 -7.7241 -3.0381 31 1 -2.2411 -6.9882 -4.0306 32 1 -3.5972 -8.4476 -2.7705 33 1 -2.4495 -8.4815 -1.3990 34 1 -5.4997 -7.6550 -0.7919 35 1 -6.4049 -5.5859 0.1820 36 1 -2.9166 -3.4750 -1.0697 37 1 -1.2971 -3.5139 -2.1424 38 1 -0.1654 -1.4316 -1.5433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:27 Heat of formation + Delta-G solvation = -13.265740 kcal Electronic energy + Delta-G solvation = -22945.589154 eV Core-core repulsion = 19549.874553 eV Total energy + Delta-G solvation = -3395.714601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66202 -39.99547 -38.34428 -37.52587 -35.88165 -35.01900 -32.48030 -31.44698 -31.02517 -29.85178 -27.97515 -26.61492 -23.88932 -23.44366 -22.84363 -21.99192 -21.17027 -19.32051 -18.90292 -17.88400 -17.07901 -16.74408 -16.54176 -16.01267 -15.81017 -15.59630 -15.34661 -14.81369 -14.51806 -14.35914 -14.22840 -13.96716 -13.84929 -13.50876 -13.18903 -12.81100 -12.79062 -12.74285 -12.49325 -12.38422 -12.26125 -12.04411 -11.98484 -11.81797 -11.63916 -11.44905 -11.19642 -10.87336 -9.98848 -9.57399 -9.49553 -8.91160 -8.59886 -6.24315 0.08137 0.20069 0.91723 1.03459 1.10463 1.37750 1.48727 1.53018 2.21394 2.38913 2.71396 2.82449 3.33616 3.51007 3.70232 3.85677 3.98391 4.04349 4.22420 4.25799 4.32028 4.40918 4.51290 4.57396 4.74258 4.86975 4.88506 4.98519 5.00783 5.03146 5.13729 5.18760 5.21274 5.26889 5.35998 5.52036 5.53740 5.65655 5.79321 5.96916 6.05434 6.22307 6.54935 6.78148 6.94560 7.08445 8.36352 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.004379 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.498036 B = 6392.036946 C = 8045.257815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.056 3.944 10 C -0.204 4.204 11 C -0.121 4.121 12 C 0.002 3.998 13 O -0.314 6.314 14 C 0.114 3.886 15 H 0.067 0.933 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.078 4.078 19 C -0.095 4.095 20 C -0.101 4.101 21 C -0.055 4.055 22 Cl -0.078 7.078 23 C -0.106 4.106 24 C -0.131 4.131 25 C -0.172 4.172 26 C -0.153 4.153 27 H 0.285 0.715 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 -12.663 -4.986 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.054 3.946 10 C -0.224 4.224 11 C -0.140 4.140 12 C -0.042 4.042 13 O -0.230 6.230 14 C 0.058 3.942 15 H 0.085 0.915 16 C -0.145 4.145 17 C -0.110 4.110 18 C -0.078 4.078 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.081 4.081 22 Cl -0.049 7.049 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.191 4.191 26 C -0.173 4.173 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.178 0.822 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.209 -12.573 -4.846 17.528 hybrid contribution 0.287 1.890 0.331 1.940 sum -10.922 -10.683 -4.514 15.931 Atomic orbital electron populations 1.69906 1.08948 1.30174 1.37013 1.26713 0.95457 1.04419 0.91413 0.85181 0.79505 0.76370 0.78791 1.18004 1.19026 1.19282 1.19743 0.97799 0.92190 1.43089 0.90584 1.17938 0.92706 0.93254 0.90748 1.20804 1.03533 0.92332 1.05724 1.19893 0.95257 0.98225 1.00620 1.18686 0.96573 0.84634 1.04306 1.85924 1.45988 1.29627 1.61448 1.21996 0.82105 1.00827 0.89296 0.91487 1.22464 1.00868 0.92230 0.98891 1.21136 0.96181 0.95002 0.98642 1.21097 0.94469 0.95411 0.96864 1.20956 0.94591 0.98853 0.96907 1.21304 1.00745 0.90172 0.99714 1.20925 0.95798 0.89075 1.02317 1.98361 1.86295 1.36675 1.83563 1.20758 0.94688 0.98831 0.98175 1.21113 0.97410 0.93817 1.00874 1.20758 1.01458 0.92625 1.04250 1.20901 0.99142 0.96582 1.00625 0.90442 0.87214 0.86111 0.88452 0.87105 0.86665 0.89116 0.81163 0.82198 0.87529 0.87173 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.17 10.91 21.82 0.24 -44.93 16 2 C 0.03 1.73 5.16 85.23 0.44 2.17 16 3 Si 0.98 39.38 29.59 68.60 2.03 41.41 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.50 -27.54 9.04 23.40 0.21 -27.33 16 8 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 9 C 0.06 3.09 5.57 -21.28 -0.12 2.97 16 10 C -0.20 -10.33 9.74 22.49 0.22 -10.11 16 11 C -0.12 -5.65 9.92 22.11 0.22 -5.44 16 12 C 0.00 0.08 6.68 22.79 0.15 0.23 16 13 O -0.31 -12.36 9.82 -89.85 -0.88 -13.24 16 14 C 0.11 3.61 2.75 30.62 0.08 3.69 16 15 H 0.07 2.24 6.19 -2.39 -0.01 2.22 16 16 C -0.11 -2.21 6.79 31.50 0.21 -2.00 16 17 C -0.07 -1.28 6.77 30.52 0.21 -1.07 16 18 C -0.08 -1.86 6.14 -19.59 -0.12 -1.98 16 19 C -0.10 -1.89 10.04 22.30 0.22 -1.67 16 20 C -0.10 -2.32 9.83 22.26 0.22 -2.10 16 21 C -0.05 -1.67 6.32 22.30 0.14 -1.53 16 22 Cl -0.08 -2.38 28.96 -2.72 -0.08 -2.46 16 23 C -0.11 -3.73 9.22 22.32 0.21 -3.52 16 24 C -0.13 -4.15 5.68 -19.50 -0.11 -4.26 16 25 C -0.17 -8.29 7.73 22.11 0.17 -8.12 16 26 C -0.15 -8.31 8.64 22.48 0.19 -8.11 16 27 H 0.29 14.05 8.30 -92.70 -0.77 13.28 16 28 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 29 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.11 4.39 6.07 -2.91 -0.02 4.38 16 37 H 0.11 4.86 4.57 -2.91 -0.01 4.84 16 38 H 0.10 5.92 6.15 -2.91 -0.02 5.90 16 Total: -1.00 -65.17 330.57 4.95 -60.22 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 1.09 Total: 27.18 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 2.55 Total: -68.17 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.24 Total: -44.93 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.88 Total: -13.24 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.08 Total: -2.46 kcal Total: -65.17 4.95 -60.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.954 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds