Wall clock time and date at job start Tue Mar 31 2020 10:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86791 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47545 * 85.01017 * 3 2 1 5 5 H 1.48506 * 109.46964 * 205.00758 * 3 2 1 6 6 H 1.48502 * 109.47393 * 325.00700 * 3 2 1 7 7 C 1.39891 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99432 * 147.85944 * 7 2 1 9 9 C 1.41216 * 119.99985 * 327.86250 * 7 2 1 10 10 C 1.40828 * 120.17974 * 339.02845 * 9 7 2 11 11 C 1.36437 * 119.80920 * 179.74057 * 10 9 7 12 12 C 1.39307 * 120.18780 * 0.52089 * 11 10 9 13 13 O 1.35671 * 119.82130 * 179.73879 * 12 11 10 14 14 C 1.42906 * 117.00055 * 353.95685 * 13 12 11 15 15 H 1.08998 * 110.26554 * 328.47403 * 14 13 12 16 16 C 1.54339 * 110.30387 * 206.29391 * 14 13 12 17 17 C 1.54349 * 102.39380 * 267.42899 * 16 14 13 18 18 C 1.51381 * 105.16815 * 333.64878 * 17 16 14 19 19 C 1.38507 * 130.37239 * 197.17041 * 18 17 16 20 20 C 1.38074 * 120.23457 * 180.02562 * 19 18 17 21 21 C 1.38376 * 119.91893 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.04420 * 180.02562 * 21 20 19 23 23 C 1.38216 * 119.90757 * 0.02562 * 21 20 19 24 24 C 1.38224 * 109.75352 * 17.19175 * 18 17 16 25 25 C 1.39317 * 120.36482 * 359.75669 * 12 11 10 26 26 C 1.36441 * 120.18186 * 359.97438 * 25 12 11 27 27 H 0.97002 * 119.99222 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.09671 * 359.97438 * 10 9 7 29 29 H 1.08010 * 119.90500 * 180.25419 * 11 10 9 30 30 H 1.08991 * 110.82609 * 25.65423 * 16 14 13 31 31 H 1.08998 * 110.82181 * 149.20687 * 16 14 13 32 32 H 1.09003 * 110.30371 * 214.72649 * 17 16 14 33 33 H 1.08997 * 110.38500 * 92.61152 * 17 16 14 34 34 H 1.08007 * 119.88344 * 0.02562 * 19 18 17 35 35 H 1.07997 * 120.04233 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.89448 * 179.97438 * 23 21 20 37 37 H 1.07996 * 119.91259 * 180.02562 * 25 12 11 38 38 H 1.07999 * 120.09187 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.3850 2.1073 1.3947 5 1 3.5893 1.4118 -0.5919 6 1 1.4971 2.6199 -0.8029 7 6 2.0082 -1.2116 0.0005 8 1 2.9640 -1.2834 -0.4970 9 6 1.4643 -2.3405 0.6516 10 6 0.4834 -2.1783 1.6490 11 6 -0.0408 -3.2745 2.2694 12 6 0.3995 -4.5509 1.9265 13 8 -0.1230 -5.6356 2.5519 14 6 -1.0180 -5.3894 3.6385 15 1 -0.7434 -4.4683 4.1525 16 6 -1.0057 -6.5784 4.6224 17 6 -2.1653 -7.4528 4.0999 18 6 -3.1028 -6.4913 3.4012 19 6 -4.4277 -6.6425 3.0269 20 6 -5.0921 -5.6133 2.3899 21 6 -4.4327 -4.4260 2.1246 22 17 -5.2651 -3.1295 1.3245 23 6 -3.1106 -4.2737 2.4976 24 6 -2.4434 -5.3057 3.1361 25 6 1.3737 -4.7198 0.9450 26 6 1.9042 -3.6343 0.3111 27 1 -0.4849 0.8401 -0.0004 28 1 0.1443 -1.1891 1.9193 29 1 -0.7961 -3.1521 3.0317 30 1 -0.0595 -7.1167 4.5678 31 1 -1.2027 -6.2413 5.6400 32 1 -2.6747 -7.9413 4.9307 33 1 -1.7925 -8.1965 3.3957 34 1 -4.9430 -7.5688 3.2341 35 1 -6.1250 -5.7347 2.0991 36 1 -2.5960 -3.3471 2.2900 37 1 1.7094 -5.7127 0.6846 38 1 2.6597 -3.7669 -0.4493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:30 Heat of formation + Delta-G solvation = -13.863125 kcal Electronic energy + Delta-G solvation = -22918.192387 eV Core-core repulsion = 19522.451882 eV Total energy + Delta-G solvation = -3395.740505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66402 -39.98700 -38.33767 -37.52484 -35.89534 -35.07832 -32.48223 -31.44941 -31.10197 -29.85523 -27.98067 -26.59887 -23.89490 -23.45062 -22.86920 -21.99610 -21.16564 -19.32716 -18.93184 -17.87946 -17.06394 -16.75039 -16.53404 -16.07152 -15.81921 -15.61419 -15.33308 -14.81179 -14.52424 -14.37583 -14.21135 -14.00871 -13.91003 -13.64972 -13.11378 -12.88424 -12.77551 -12.73153 -12.49822 -12.36692 -12.26422 -12.06060 -11.97853 -11.81640 -11.71440 -11.44317 -11.18410 -10.79236 -9.98972 -9.58356 -9.49720 -9.05154 -8.71231 -6.19701 0.07913 0.19666 0.92779 1.01499 1.09836 1.36441 1.48892 1.52197 2.18803 2.39379 2.60925 2.83852 3.33910 3.51300 3.68016 3.85368 3.98247 4.04284 4.22232 4.25222 4.32100 4.38825 4.51214 4.57108 4.74158 4.85316 4.88167 4.98249 5.00871 5.03295 5.12427 5.18462 5.20806 5.26492 5.30553 5.50458 5.53478 5.64884 5.79056 5.94877 6.02191 6.21579 6.52045 6.77919 6.90423 7.09093 8.23329 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.004343 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.319647 B = 6444.891573 C = 8046.858832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.049 3.951 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.255 1.255 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.065 3.935 10 C -0.172 4.172 11 C -0.162 4.162 12 C -0.012 4.012 13 O -0.314 6.314 14 C 0.114 3.886 15 H 0.066 0.934 16 C -0.107 4.107 17 C -0.073 4.073 18 C -0.078 4.078 19 C -0.095 4.095 20 C -0.101 4.101 21 C -0.054 4.054 22 Cl -0.077 7.077 23 C -0.106 4.106 24 C -0.131 4.131 25 C -0.112 4.112 26 C -0.214 4.214 27 H 0.290 0.710 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -11.422 9.430 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.169 4.169 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.179 1.179 6 H -0.192 1.192 7 C -0.536 4.536 8 H 0.096 0.904 9 C 0.062 3.938 10 C -0.191 4.191 11 C -0.181 4.181 12 C -0.055 4.055 13 O -0.230 6.230 14 C 0.057 3.943 15 H 0.084 0.916 16 C -0.144 4.144 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.081 4.081 22 Cl -0.049 7.049 23 C -0.124 4.124 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.234 4.234 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.178 0.822 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.649 -11.372 9.285 17.568 hybrid contribution 0.166 1.811 -0.560 1.903 sum -9.484 -9.561 8.725 16.046 Atomic orbital electron populations 1.69993 1.09500 1.31047 1.32806 1.26721 0.94977 1.04524 0.90663 0.85371 0.79750 0.76281 0.79465 1.18763 1.17853 1.19219 1.19666 1.05745 0.95137 1.33092 0.90400 1.17862 0.91683 0.92895 0.91331 1.20639 1.02366 0.96771 0.99358 1.20693 1.02284 0.92524 1.02603 1.18603 1.00694 0.85457 1.00758 1.85918 1.59779 1.30580 1.46770 1.21928 0.84257 1.00961 0.87117 0.91600 1.22471 1.00658 0.93898 0.97423 1.21139 0.93266 0.96158 1.00408 1.21106 0.94722 0.94841 0.97189 1.20958 0.92836 0.99800 0.97703 1.21303 1.01448 0.90662 0.98507 1.20918 0.93206 0.91758 1.02201 1.98362 1.77921 1.49860 1.78724 1.20732 0.93391 0.99657 0.98666 1.21047 0.96857 0.94998 1.00258 1.19890 0.97405 0.98569 0.97224 1.20716 1.06336 0.92001 1.04338 0.89939 0.88980 0.87226 0.88478 0.87128 0.86678 0.89137 0.81166 0.82176 0.87587 0.86209 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.28 11.69 21.82 0.26 -43.03 16 2 C 0.05 2.52 4.79 85.23 0.41 2.93 16 3 Si 0.97 38.61 29.66 68.60 2.03 40.65 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.51 -27.99 8.95 23.40 0.21 -27.78 16 8 H 0.08 4.15 8.01 -2.91 -0.02 4.13 16 9 C 0.06 3.58 5.58 -21.28 -0.12 3.46 16 10 C -0.17 -9.30 8.74 22.48 0.20 -9.10 16 11 C -0.16 -7.82 7.83 22.11 0.17 -7.65 16 12 C -0.01 -0.53 6.69 22.79 0.15 -0.38 16 13 O -0.31 -12.47 9.82 -89.88 -0.88 -13.35 16 14 C 0.11 3.62 2.73 30.52 0.08 3.70 16 15 H 0.07 2.22 6.14 -2.39 -0.01 2.20 16 16 C -0.11 -2.23 6.81 31.51 0.21 -2.02 16 17 C -0.07 -1.29 6.77 30.52 0.21 -1.09 16 18 C -0.08 -1.87 6.14 -19.59 -0.12 -1.99 16 19 C -0.10 -1.89 10.04 22.30 0.22 -1.67 16 20 C -0.10 -2.30 9.83 22.26 0.22 -2.09 16 21 C -0.05 -1.65 6.32 22.30 0.14 -1.51 16 22 Cl -0.08 -2.35 28.96 -2.72 -0.08 -2.43 16 23 C -0.11 -3.71 9.26 22.32 0.21 -3.50 16 24 C -0.13 -4.13 5.69 -19.60 -0.11 -4.25 16 25 C -0.11 -5.27 9.92 22.11 0.22 -5.05 16 26 C -0.21 -10.90 9.74 22.49 0.22 -10.68 16 27 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 28 H 0.09 5.16 6.44 -2.91 -0.02 5.15 16 29 H 0.11 4.83 4.57 -2.91 -0.01 4.82 16 30 H 0.10 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.11 4.33 6.15 -2.91 -0.02 4.32 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -64.87 331.66 4.94 -59.92 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 1.09 Total: 26.88 kcal Atomic # 6 Polarization: -71.17 SS G_CDS: 2.52 Total: -68.64 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.26 Total: -43.03 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.88 Total: -13.35 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.43 kcal Total: -64.87 4.94 -59.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.061 kcal (2) G-P(sol) polarization free energy of solvation -64.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds