Wall clock time and date at job start Tue Mar 31 2020 10:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00350 * 2 1 4 4 H 1.48502 * 109.46565 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46966 * 119.99746 * 3 2 1 6 6 H 1.48494 * 109.47476 * 240.00436 * 3 2 1 7 7 C 1.37880 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.47476 * 110.99879 * 265.97342 * 10 9 7 12 12 C 1.53515 * 87.93426 * 221.29576 * 11 10 9 13 13 O 1.42900 * 114.16853 * 272.38486 * 12 11 10 14 14 C 1.35952 * 116.99455 * 250.57130 * 13 12 11 15 15 C 1.38705 * 120.01986 * 5.81919 * 14 13 12 16 16 C 1.38315 * 119.94627 * 179.97438 * 15 14 13 17 17 F 1.35103 * 120.00736 * 180.02562 * 16 15 14 18 18 C 1.38695 * 119.98487 * 359.97438 * 16 15 14 19 19 F 1.35097 * 119.97947 * 180.02562 * 18 16 15 20 20 C 1.38363 * 120.04167 * 359.97438 * 18 16 15 21 21 C 1.38210 * 120.05196 * 359.78748 * 20 18 16 22 22 N 1.48022 * 119.99616 * 180.25317 * 21 20 18 23 23 O 1.21795 * 119.99490 * 0.21020 * 22 21 20 24 24 O 1.21796 * 120.00532 * 180.21193 * 22 21 20 25 25 C 1.47478 * 110.99957 * 170.00236 * 10 9 7 26 26 H 0.97000 * 120.00376 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47483 * 300.00571 * 9 7 2 28 28 H 1.08999 * 109.47054 * 60.00582 * 9 7 2 29 29 H 1.08996 * 113.48167 * 336.06527 * 11 10 9 30 30 H 1.09006 * 113.47683 * 106.52952 * 11 10 9 31 31 H 1.08996 * 114.34764 * 139.68393 * 12 11 10 32 32 H 1.08004 * 120.02763 * 359.94848 * 15 14 13 33 33 H 1.07994 * 119.97661 * 180.02562 * 20 18 16 34 34 H 1.08999 * 113.47451 * 253.47204 * 25 10 9 35 35 H 1.09001 * 113.47688 * 23.87554 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.4754 -4.0803 -1.3740 12 6 2.4189 -5.5182 -0.8393 13 8 3.6675 -6.0089 -0.3471 14 6 4.2867 -6.9693 -1.0836 15 6 3.7670 -7.3430 -2.3142 16 6 4.3985 -8.3199 -3.0625 17 9 3.8937 -8.6844 -4.2615 18 6 5.5507 -8.9244 -2.5822 19 9 6.1677 -9.8782 -3.3135 20 6 6.0692 -8.5505 -1.3551 21 6 5.4423 -7.5710 -0.6083 22 7 6.0012 -7.1680 0.7018 23 8 7.0156 -7.6969 1.1197 24 8 5.4467 -6.3076 1.3619 25 6 1.5183 -4.8986 0.2385 26 1 -0.4851 0.8400 0.0004 27 1 0.6245 -2.5571 0.8896 28 1 0.6240 -2.5567 -0.8903 29 1 1.6756 -3.8465 -2.0766 30 1 3.4597 -3.7930 -1.7440 31 1 1.9087 -6.2223 -1.4966 32 1 2.8698 -6.8718 -2.6875 33 1 6.9666 -9.0216 -0.9824 34 1 1.6913 -5.3047 1.2351 35 1 0.4627 -4.8829 -0.0328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225779451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:51 Heat of formation + Delta-G solvation = -65.049856 kcal Electronic energy + Delta-G solvation = -25654.939871 eV Core-core repulsion = 21294.333800 eV Total energy + Delta-G solvation = -4360.606072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.90628 -49.93702 -43.31340 -41.98695 -40.35061 -38.26825 -37.50052 -35.02313 -33.12423 -31.73234 -30.89390 -27.61894 -27.50097 -26.89580 -25.13497 -23.83148 -23.47078 -21.41065 -20.83768 -20.00384 -19.52564 -18.67262 -18.64048 -18.44454 -18.19936 -17.72236 -17.32691 -17.04771 -16.60238 -16.31088 -16.27464 -15.90217 -15.53003 -15.33311 -15.14206 -14.88791 -14.24262 -13.85333 -13.69645 -13.25826 -13.24738 -12.96075 -12.76175 -12.67691 -12.40525 -12.31091 -12.21737 -12.17024 -11.62369 -11.58349 -11.29263 -10.86397 -10.61608 -9.86522 -9.57903 -8.23646 -6.32736 -1.51019 -0.60229 -0.05095 0.21814 1.39364 1.41047 1.42269 1.50318 1.61863 2.19182 2.38921 2.60013 2.85285 3.08556 3.12064 3.16661 3.22981 3.35017 3.73471 3.79682 3.98433 4.12915 4.20354 4.37631 4.43513 4.57879 4.59209 4.75280 4.92075 4.93592 5.03302 5.18166 5.57688 5.78584 5.80456 6.07987 6.44552 6.45791 6.81044 7.36751 8.86786 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.003224 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.984849 B = 8683.021090 C = 9459.407317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.172 3.828 10 N -0.490 5.490 11 C -0.007 4.007 12 C 0.054 3.946 13 O -0.255 6.255 14 C 0.220 3.780 15 C -0.213 4.213 16 C 0.182 3.818 17 F -0.103 7.103 18 C 0.035 3.965 19 F -0.114 7.114 20 C -0.011 4.011 21 C -0.085 4.085 22 N 0.037 4.963 23 O -0.159 6.159 24 O -0.181 6.181 25 C 0.002 3.998 26 H 0.266 0.734 27 H 0.003 0.997 28 H -0.006 1.006 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.202 0.798 33 H 0.200 0.800 34 H 0.088 0.912 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -21.717 -9.008 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.045 3.955 10 N -0.212 5.212 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.164 6.164 14 C 0.169 3.831 15 C -0.233 4.233 16 C 0.161 3.839 17 F -0.081 7.081 18 C 0.013 3.987 19 F -0.092 7.092 20 C -0.030 4.030 21 C -0.171 4.171 22 N 0.552 4.448 23 O -0.376 6.376 24 O -0.389 6.389 25 C -0.127 4.127 26 H 0.075 0.925 27 H 0.021 0.979 28 H 0.012 0.988 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.219 0.781 33 H 0.217 0.783 34 H 0.106 0.894 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.675 -21.428 -9.040 24.490 hybrid contribution -0.424 0.933 -0.314 1.072 sum 7.251 -20.495 -9.354 23.667 Atomic orbital electron populations 1.70030 1.07406 1.28035 1.51622 1.25822 0.95765 1.02893 0.94739 0.85518 0.78299 0.78340 0.78981 1.20418 1.19866 1.19293 1.21389 0.93390 0.91570 1.50311 0.92954 1.19964 0.90577 0.90137 0.94775 1.69068 1.33272 1.02140 1.16764 1.24319 1.03197 0.92888 0.93235 1.23962 0.82449 0.95535 0.98169 1.86600 1.35325 1.48202 1.46309 1.18589 0.88902 0.85984 0.89633 1.21297 1.06101 1.02265 0.93633 1.17541 0.91033 0.93436 0.81881 1.91651 1.85846 1.89686 1.40896 1.16886 0.94692 0.94851 0.92231 1.91615 1.81530 1.60476 1.75591 1.20722 1.00060 0.91824 0.90400 1.20253 1.00194 1.07744 0.88872 1.43466 0.99855 0.99251 1.02246 1.94477 1.13442 1.55573 1.74095 1.94750 1.62055 1.25268 1.56871 1.24077 0.97334 0.90809 1.00508 0.92546 0.97866 0.98823 0.88869 0.90469 0.83523 0.78140 0.78269 0.89406 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 2 C 0.01 0.35 5.46 84.66 0.46 0.82 16 3 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.53 -30.25 9.39 25.60 0.24 -30.01 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.17 8.81 4.57 85.56 0.39 9.20 16 10 N -0.49 -20.39 6.32 -932.96 -5.89 -26.29 16 11 C -0.01 -0.23 7.55 83.57 0.63 0.41 16 12 C 0.05 1.28 4.07 30.94 0.13 1.41 16 13 O -0.26 -6.89 8.19 -71.83 -0.59 -7.48 16 14 C 0.22 4.49 6.66 22.49 0.15 4.64 16 15 C -0.21 -2.86 9.00 22.40 0.20 -2.66 16 16 C 0.18 2.36 7.30 22.40 0.16 2.52 16 17 F -0.10 -1.38 17.18 44.97 0.77 -0.61 16 18 C 0.03 0.47 7.30 22.41 0.16 0.63 16 19 F -0.11 -1.62 17.18 44.97 0.77 -0.85 16 20 C -0.01 -0.15 9.53 22.29 0.21 0.06 16 21 C -0.08 -1.81 6.87 36.48 0.25 -1.55 16 22 N 0.04 1.06 4.45 -46.22 -0.21 0.86 16 23 O -0.16 -4.37 18.45 18.89 0.35 -4.02 16 24 O -0.18 -6.39 17.23 25.62 0.44 -5.95 16 25 C 0.00 0.05 7.52 83.57 0.63 0.68 16 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 28 H -0.01 -0.31 7.30 -2.39 -0.02 -0.33 16 29 H 0.09 2.75 7.42 -2.39 -0.02 2.73 16 30 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.15 1.91 5.90 -2.39 -0.01 1.90 16 32 H 0.20 1.69 5.88 -2.91 -0.02 1.67 16 33 H 0.20 2.07 7.61 -2.91 -0.02 2.05 16 34 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.10 2.73 7.91 -2.39 -0.02 2.71 16 Total: -1.00 -70.59 320.88 2.74 -67.85 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: 1.16 Total: -1.60 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 3.62 Total: -13.86 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -5.81 Total: -80.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.20 Total: -17.45 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 1.55 Total: -1.46 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.59 2.74 -67.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225779451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.799 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds