Wall clock time and date at job start Tue Mar 31 2020 10:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45197 * 109.47159 * 2 1 4 4 C 1.34230 * 116.99699 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99747 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47177 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47151 * 55.12276 * 7 6 4 9 9 C 1.50702 * 109.47041 * 175.12320 * 7 6 4 10 10 H 1.07999 * 119.99650 * 245.24372 * 9 7 6 11 11 C 1.37880 * 120.00026 * 65.25041 * 9 7 6 12 12 N 1.31516 * 119.99613 * 201.36945 * 11 9 7 13 13 Si 1.86799 * 119.99939 * 21.36603 * 11 9 7 14 14 H 1.48497 * 109.46837 * 179.97438 * 13 11 9 15 15 H 1.48499 * 109.47280 * 300.00360 * 13 11 9 16 16 H 1.48502 * 109.46914 * 60.00776 * 13 11 9 17 17 O 1.42901 * 109.47197 * 295.12572 * 7 6 4 18 18 C 1.35515 * 117.00183 * 150.00208 * 17 7 6 19 19 N 1.32863 * 120.50567 * 359.71441 * 18 17 7 20 20 C 1.31757 * 120.75951 * 179.76791 * 19 18 17 21 21 N 1.31788 * 121.82327 * 0.52390 * 20 19 18 22 22 C 1.32600 * 120.93896 * 359.74258 * 21 20 19 23 23 Cl 1.73603 * 120.42604 * 180.02562 * 22 21 20 24 24 C 1.38433 * 119.14618 * 359.97438 * 22 21 20 25 25 C 1.50699 * 120.82763 * 180.02562 * 24 22 21 26 26 H 1.09000 * 109.47099 * 300.00050 * 1 2 3 27 27 H 1.09000 * 109.47241 * 59.99688 * 1 2 3 28 28 H 1.09002 * 109.47437 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47099 * 239.99950 * 2 1 3 30 30 H 1.09000 * 109.47241 * 120.00312 * 2 1 3 31 31 H 1.09004 * 109.47501 * 59.99875 * 6 4 3 32 32 H 1.09004 * 109.47447 * 299.99557 * 6 4 3 33 33 H 0.96996 * 120.00157 * 354.61451 * 12 11 9 34 34 H 1.07993 * 119.08744 * 180.24986 * 20 19 18 35 35 H 1.09004 * 109.47340 * 269.97411 * 25 24 22 36 36 H 1.09000 * 109.47462 * 29.97553 * 25 24 22 37 37 H 1.09007 * 109.46887 * 149.97731 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8572 -0.0001 8 1 5.7807 2.2517 -0.8435 9 6 6.0243 4.2447 -0.1204 10 1 6.5887 4.5209 -0.9988 11 6 5.8306 5.1615 0.8911 12 7 5.9431 6.4481 0.6427 13 14 5.4084 4.5762 2.6140 14 1 5.2527 5.7493 3.5110 15 1 4.1383 3.8076 2.5783 16 1 6.4993 3.7064 3.1225 17 8 5.8945 2.2605 1.2194 18 6 7.0500 1.5542 1.1723 19 7 7.7188 1.4304 0.0309 20 6 8.8452 0.7487 -0.0196 21 7 9.3478 0.1572 1.0454 22 6 8.7354 0.2313 2.2192 23 17 9.4098 -0.5525 3.6137 24 6 7.5519 0.9425 2.3185 25 6 6.8246 1.0517 3.6338 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5852 3.4690 0.8905 32 1 3.5844 3.4700 -0.8895 33 1 6.2383 6.7495 -0.2307 34 1 9.3687 0.6688 -0.9608 35 1 6.1184 0.2267 3.7282 36 1 7.5441 1.0094 4.4515 37 1 6.2850 1.9981 3.6731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226076462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:18 Heat of formation + Delta-G solvation = -106.252743 kcal Electronic energy + Delta-G solvation = -24672.544214 eV Core-core repulsion = 20861.948131 eV Total energy + Delta-G solvation = -3810.596083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31829 -41.52950 -39.65477 -37.98587 -37.62802 -35.57657 -34.59855 -33.96480 -33.04179 -32.18543 -28.59694 -28.10528 -25.49454 -24.35754 -24.07958 -23.12596 -21.83674 -20.58669 -19.48471 -18.91381 -18.57599 -17.74816 -17.44679 -16.99290 -16.76918 -15.79107 -15.74272 -15.50145 -15.30369 -15.12313 -14.82714 -14.72691 -14.25185 -14.00114 -13.70888 -13.67009 -13.46994 -13.29532 -12.87466 -12.67466 -12.61452 -12.49566 -12.45354 -12.26369 -11.79819 -11.56463 -11.53676 -11.38423 -11.14660 -10.91414 -10.57231 -10.45844 -9.80384 -8.89296 -6.63943 -0.27554 0.02568 0.42597 1.15085 1.40244 1.45122 1.61706 1.70477 2.26788 2.36240 2.64075 2.92394 3.10492 3.29509 3.63446 3.77147 3.83440 3.98886 4.08647 4.15340 4.23756 4.31529 4.33952 4.62457 4.65745 4.79208 4.83797 4.91862 4.95306 5.01199 5.13403 5.19341 5.41746 5.58939 5.74009 5.87945 6.13568 6.50967 6.72847 6.95324 7.20810 8.45659 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.005944 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.928624 B = 4709.564149 C = 6040.644061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.362 6.362 4 C 0.466 3.534 5 O -0.531 6.531 6 C -0.110 4.110 7 C 0.205 3.795 8 H 0.057 0.943 9 C -0.619 4.619 10 H 0.036 0.964 11 C 0.010 3.990 12 N -0.905 5.905 13 Si 1.079 2.921 14 H -0.301 1.301 15 H -0.246 1.246 16 H -0.260 1.260 17 O -0.304 6.304 18 C 0.390 3.610 19 N -0.579 5.579 20 C 0.339 3.661 21 N -0.552 5.552 22 C 0.231 3.769 23 Cl 0.009 6.991 24 C -0.218 4.218 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.262 0.738 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -13.834 3.765 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.280 6.280 4 C 0.311 3.689 5 O -0.420 6.420 6 C -0.147 4.147 7 C 0.150 3.850 8 H 0.075 0.925 9 C -0.656 4.656 10 H 0.054 0.946 11 C -0.194 4.194 12 N -0.538 5.538 13 Si 0.905 3.095 14 H -0.230 1.230 15 H -0.171 1.171 16 H -0.186 1.186 17 O -0.208 6.208 18 C 0.203 3.797 19 N -0.309 5.309 20 C 0.052 3.948 21 N -0.274 5.274 22 C 0.062 3.938 23 Cl 0.037 6.963 24 C -0.225 4.225 25 C -0.162 4.162 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.749 -13.655 4.720 15.208 hybrid contribution 0.562 -0.111 -1.455 1.564 sum -4.186 -13.766 3.265 14.754 Atomic orbital electron populations 1.21820 0.89972 1.04467 1.03791 1.23318 0.97403 0.79322 1.02347 1.86539 1.23741 1.33859 1.83816 1.24126 0.80695 0.92866 0.71227 1.90613 1.61033 1.43846 1.46544 1.22074 0.94751 0.90419 1.07465 1.20085 0.89434 0.92272 0.83165 0.92487 1.22106 1.39938 0.97001 1.06526 0.94608 1.27026 0.92703 0.92881 1.06839 1.70986 1.40865 1.15786 1.26199 0.83681 0.79605 0.74491 0.71712 1.22973 1.17104 1.18572 1.86022 1.33892 1.60831 1.40073 1.19965 0.85986 0.85181 0.88555 1.68160 1.11690 1.22630 1.28401 1.25299 0.87088 0.85346 0.97106 1.67875 1.35611 1.24995 0.98936 1.21684 0.89550 0.92424 0.90189 1.98384 1.84704 1.77845 1.35326 1.20632 0.98756 1.04740 0.98371 1.20820 1.00547 1.03793 0.91089 0.91236 0.91188 0.87882 0.91523 0.91610 0.87147 0.84928 0.92833 0.74700 0.89282 0.88892 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.29 71.98 0.74 -1.57 16 2 C 0.05 1.19 6.19 71.98 0.45 1.64 16 3 O -0.36 -11.37 10.22 -51.41 -0.53 -11.89 16 4 C 0.47 17.36 7.84 71.24 0.56 17.92 16 5 O -0.53 -22.08 15.17 27.08 0.41 -21.67 16 6 C -0.11 -4.37 5.22 29.85 0.16 -4.21 16 7 C 0.20 9.50 1.58 29.85 0.05 9.55 16 8 H 0.06 2.77 6.83 -2.39 -0.02 2.75 16 9 C -0.62 -33.27 9.29 25.60 0.24 -33.03 16 10 H 0.04 2.13 8.06 -2.91 -0.02 2.11 16 11 C 0.01 0.54 5.30 84.66 0.45 0.98 16 12 N -0.91 -52.98 13.70 21.45 0.29 -52.69 16 13 Si 1.08 48.99 24.08 68.60 1.65 50.65 16 14 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 15 H -0.25 -9.87 5.70 99.48 0.57 -9.30 16 16 H -0.26 -11.21 5.17 99.48 0.51 -10.70 16 17 O -0.30 -13.68 4.40 -74.24 -0.33 -14.01 16 18 C 0.39 16.78 7.46 84.79 0.63 17.41 16 19 N -0.58 -24.26 8.81 -312.94 -2.76 -27.02 16 20 C 0.34 11.57 12.28 180.90 2.22 13.79 16 21 N -0.55 -18.79 10.43 -191.05 -1.99 -20.78 16 22 C 0.23 7.79 7.32 84.62 0.62 8.41 16 23 Cl 0.01 0.23 27.63 -2.72 -0.08 0.15 16 24 C -0.22 -8.06 5.93 -19.57 -0.12 -8.17 16 25 C -0.11 -3.24 9.49 71.24 0.68 -2.57 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.11 4.39 5.13 -2.39 -0.01 4.38 16 32 H 0.13 4.86 8.14 -2.39 -0.02 4.84 16 33 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 34 H 0.24 5.87 8.06 -2.91 -0.02 5.85 16 35 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.09 2.39 7.02 -2.39 -0.02 2.37 16 37 H 0.07 2.37 4.82 -2.38 -0.01 2.36 16 Total: -1.00 -66.32 326.22 4.09 -62.23 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.74 Total: 14.87 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 6.67 Total: 20.15 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.46 Total: -100.49 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.44 Total: -47.57 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.65 Total: 50.65 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -0.08 Total: 0.15 kcal Total: -66.32 4.09 -62.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226076462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.021 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds