Wall clock time and date at job start Tue Mar 31 2020 10:27:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.45196 * 109.47375 * 2 1
4 4 C 1.34231 * 117.00254 * 179.97438 * 3 2 1
5 5 O 1.20828 * 119.99850 * 0.02562 * 4 3 2
6 6 C 1.50699 * 120.00150 * 180.02562 * 4 3 2
7 7 C 1.53006 * 109.46866 * 180.02562 * 6 4 3
8 8 H 1.09000 * 109.47314 * 55.00220 * 7 6 4
9 9 C 1.50698 * 109.46914 * 174.99892 * 7 6 4
10 10 H 1.07997 * 120.00394 * 240.00350 * 9 7 6
11 11 C 1.37880 * 119.99838 * 59.99783 * 9 7 6
12 12 N 1.31510 * 120.00046 * 0.02562 * 11 9 7
13 13 Si 1.86799 * 119.99883 * 179.97438 * 11 9 7
14 14 H 1.48496 * 109.47207 * 90.00346 * 13 11 9
15 15 H 1.48508 * 109.47130 * 210.00145 * 13 11 9
16 16 H 1.48500 * 109.47432 * 330.00237 * 13 11 9
17 17 O 1.42899 * 109.46855 * 294.99874 * 7 6 4
18 18 C 1.35718 * 116.99396 * 150.00606 * 17 7 6
19 19 N 1.32323 * 120.12921 * 359.97438 * 18 17 7
20 20 N 1.28343 * 122.12038 * 180.02562 * 19 18 17
21 21 C 1.31923 * 122.24238 * 0.02562 * 20 19 18
22 22 Cl 1.73597 * 120.02803 * 180.02562 * 21 20 19
23 23 C 1.38864 * 119.94296 * 359.97438 * 21 20 19
24 24 C 1.38642 * 118.00888 * 359.73098 * 23 21 20
25 25 C 1.50694 * 121.03134 * 180.26470 * 24 23 21
26 26 H 1.09000 * 109.47303 * 59.99035 * 1 2 3
27 27 H 1.08998 * 109.47654 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.46566 * 300.00007 * 1 2 3
29 29 H 1.09001 * 109.47165 * 240.00455 * 2 1 3
30 30 H 1.08995 * 109.47409 * 120.00480 * 2 1 3
31 31 H 1.08993 * 109.47512 * 60.00512 * 6 4 3
32 32 H 1.09000 * 109.47247 * 300.00221 * 6 4 3
33 33 H 0.97000 * 120.00125 * 180.02562 * 12 11 9
34 34 H 1.08006 * 120.99271 * 179.97438 * 23 21 20
35 35 H 1.09000 * 109.47481 * 270.26560 * 25 24 23
36 36 H 1.09000 * 109.47587 * 30.26972 * 25 24 23
37 37 H 1.09004 * 109.47364 * 150.26906 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3448 1.5448 0.0005
5 8 4.0808 0.5865 0.0005
6 6 3.9208 2.9373 0.0012
7 6 5.4488 2.8571 0.0010
8 1 5.7807 2.2499 -0.8411
9 6 6.0245 4.2443 -0.1222
10 1 6.6592 4.4932 -0.9598
11 6 5.7409 5.1959 0.8344
12 7 4.9683 4.8929 1.8546
13 14 6.4551 6.9152 0.6820
14 1 5.5210 7.7726 -0.0910
15 1 6.6505 7.4920 2.0365
16 1 7.7617 6.8481 -0.0205
17 8 5.8946 2.2630 1.2218
18 6 7.0519 1.5556 1.1760
19 7 7.7144 1.4391 0.0365
20 7 8.8117 0.7790 -0.0505
21 6 9.3524 0.1724 0.9888
22 17 10.8394 -0.7044 0.8060
23 6 8.7315 0.2368 2.2292
24 6 7.5492 0.9540 2.3291
25 6 6.8217 1.0733 3.6434
26 1 -0.3634 0.5140 -0.8899
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3632 0.5139 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5139 0.8899
31 1 3.5847 3.4692 0.8911
32 1 3.5852 3.4698 -0.8888
33 1 4.7685 5.5624 2.5274
34 1 9.1591 -0.2538 3.0912
35 1 6.1154 0.2492 3.7439
36 1 7.5410 1.0372 4.4615
37 1 6.2823 2.0200 3.6755
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001229165277.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:27:12
Heat of formation + Delta-G solvation = -82.282742 kcal
Electronic energy + Delta-G solvation = -24351.001505 eV
Core-core repulsion = 20541.444840 eV
Total energy + Delta-G solvation = -3809.556666 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.087 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.61048 -39.82775 -37.62402 -36.42608 -35.94954 -34.13775 -33.25317 -31.64773
-30.98111 -30.01160 -27.77172 -26.38363 -24.07528 -23.16075 -22.47329 -21.71292
-20.01661 -18.14112 -17.28508 -17.14776 -16.23204 -16.18398 -15.89413 -15.54691
-15.13220 -14.70850 -14.05614 -13.74640 -13.42916 -13.25973 -12.89508 -12.81902
-12.70306 -12.46344 -12.23081 -12.04121 -11.85666 -11.55312 -11.37443 -11.24273
-11.20287 -11.07488 -10.91454 -10.77039 -10.57700 -10.19704 -9.81405 -9.70582
-9.51587 -9.42724 -8.92214 -8.79323 -7.92541 -6.32521 -4.49558 1.18535
1.52319 2.03166 2.93951 3.14296 3.23618 3.24843 3.30493 3.94515
4.04915 4.21460 4.73853 4.86969 5.01465 5.04474 5.10859 5.18893
5.23380 5.34192 5.42518 5.56253 5.85637 5.86512 5.91080 5.98544
6.03209 6.06401 6.24723 6.36159 6.50035 6.59742 6.81494 6.94614
7.23074 7.62643 7.85290 8.23818 8.44262 8.68897 9.21267 9.27226
10.69587
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.009119 B = 0.005660 C = 0.003937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3069.638448 B = 4945.527430 C = 7111.140666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.059 3.941
3 O -0.365 6.365
4 C 0.457 3.543
5 O -0.517 6.517
6 C -0.103 4.103
7 C 0.221 3.779
8 H 0.055 0.945
9 C -0.544 4.544
10 H 0.073 0.927
11 C 0.081 3.919
12 N -0.864 5.864
13 Si 0.897 3.103
14 H -0.275 1.275
15 H -0.284 1.284
16 H -0.271 1.271
17 O -0.262 6.262
18 C 0.314 3.686
19 N -0.273 5.273
20 N -0.200 5.200
21 C 0.056 3.944
22 Cl -0.036 7.036
23 C -0.090 4.090
24 C -0.104 4.104
25 C -0.101 4.101
26 H 0.064 0.936
27 H 0.073 0.927
28 H 0.065 0.935
29 H 0.063 0.937
30 H 0.064 0.936
31 H 0.141 0.859
32 H 0.106 0.894
33 H 0.268 0.732
34 H 0.151 0.849
35 H 0.073 0.927
36 H 0.067 0.933
37 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.080 -8.080 2.886 8.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.015 4.015
3 O -0.283 6.283
4 C 0.301 3.699
5 O -0.405 6.405
6 C -0.141 4.141
7 C 0.167 3.833
8 H 0.073 0.927
9 C -0.581 4.581
10 H 0.091 0.909
11 C -0.125 4.125
12 N -0.500 5.500
13 Si 0.724 3.276
14 H -0.201 1.201
15 H -0.209 1.209
16 H -0.195 1.195
17 O -0.162 6.162
18 C 0.128 3.872
19 N -0.133 5.133
20 N -0.046 5.046
21 C -0.118 4.118
22 Cl -0.009 7.009
23 C -0.118 4.118
24 C -0.117 4.117
25 C -0.158 4.158
26 H 0.083 0.917
27 H 0.092 0.908
28 H 0.084 0.916
29 H 0.082 0.918
30 H 0.082 0.918
31 H 0.158 0.842
32 H 0.124 0.876
33 H 0.078 0.922
34 H 0.169 0.831
35 H 0.092 0.908
36 H 0.086 0.914
37 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -2.064 -7.914 1.670 8.347
hybrid contribution 0.525 0.334 1.321 1.460
sum -1.539 -7.579 2.990 8.292
Atomic orbital electron populations
1.21778 0.93237 1.02358 1.03357 1.22859 0.94895 0.81725 1.02033
1.86575 1.26047 1.31032 1.84674 1.24909 0.79545 0.94284 0.71148
1.90601 1.60250 1.43671 1.45932 1.21896 0.96487 0.88210 1.07471
1.19937 0.88290 0.93088 0.81977 0.92689 1.21420 1.32186 0.94161
1.10340 0.90929 1.25103 0.93774 0.99192 0.94451 1.69842 1.34545
1.34627 1.10967 0.86496 0.79996 0.83408 0.77707 1.20051 1.20917
1.19508 1.86493 1.30625 1.59132 1.39980 1.21467 0.88647 0.87105
0.89951 1.73278 1.02351 1.15434 1.22250 1.72592 1.03647 1.02514
1.25847 1.23021 0.93190 1.02498 0.93102 1.98349 1.30903 1.73533
1.98081 1.21753 0.94362 0.98334 0.97326 1.20409 0.95862 0.98578
0.96840 1.20618 0.99654 1.04435 0.91123 0.91666 0.90820 0.91590
0.91842 0.91796 0.84181 0.87578 0.92202 0.83101 0.90817 0.91444
0.89105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 10.29 37.16 0.38 -1.19 16
2 C 0.06 0.85 6.19 37.16 0.23 1.08 16
3 O -0.37 -6.55 10.22 -39.26 -0.40 -6.95 16
4 C 0.46 9.45 7.84 36.01 0.28 9.73 16
5 O -0.52 -11.81 15.17 -24.06 -0.36 -12.18 16
6 C -0.10 -2.24 5.22 -27.88 -0.15 -2.38 16
7 C 0.22 5.37 1.60 -27.88 -0.04 5.32 16
8 H 0.06 1.40 6.82 -51.93 -0.35 1.04 16
9 C -0.54 -13.98 8.90 -34.44 -0.31 -14.29 16
10 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16
11 C 0.08 2.04 5.24 -17.82 -0.09 1.95 16
12 N -0.86 -21.75 10.93 55.43 0.61 -21.15 16
13 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16
14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
16 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16
17 O -0.26 -6.36 7.57 -33.31 -0.25 -6.61 16
18 C 0.31 7.18 7.51 -16.97 -0.13 7.05 16
19 N -0.27 -6.47 9.83 30.50 0.30 -6.17 16
20 N -0.20 -4.31 11.48 32.89 0.38 -3.93 16
21 C 0.06 1.01 7.36 -17.28 -0.13 0.88 16
22 Cl -0.04 -0.53 29.13 -51.86 -1.51 -2.04 16
23 C -0.09 -1.46 9.71 -39.20 -0.38 -1.84 16
24 C -0.10 -1.95 5.94 -104.10 -0.62 -2.57 16
25 C -0.10 -1.58 9.86 36.00 0.36 -1.22 16
26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16
30 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16
31 H 0.14 3.24 6.22 -51.93 -0.32 2.92 16
32 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16
33 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16
34 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16
35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
36 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16
37 H 0.09 1.63 7.63 -51.93 -0.40 1.23 16
LS Contribution 340.80 15.07 5.14 5.14
Total: -1.00 -28.97 340.80 -6.15 -35.11
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: -4.42 Total: 1.46 kcal
Atomic # 6 Polarization: 3.11 SS G_CDS: -0.59 Total: 2.51 kcal
Atomic # 7 Polarization: -32.53 SS G_CDS: 1.28 Total: -31.25 kcal
Atomic # 8 Polarization: -24.72 SS G_CDS: -1.02 Total: -25.74 kcal
Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal
Atomic # 17 Polarization: -0.53 SS G_CDS: -1.51 Total: -2.04 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -28.97 -6.15 -35.11 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001229165277.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.171 kcal
(2) G-P(sol) polarization free energy of solvation -28.966 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.137 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds