Wall clock time and date at job start Tue Mar 31 2020 10:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47375 * 2 1 4 4 C 1.34231 * 117.00254 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99850 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00150 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46866 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47314 * 55.00220 * 7 6 4 9 9 C 1.50698 * 109.46914 * 174.99892 * 7 6 4 10 10 H 1.07997 * 120.00394 * 240.00350 * 9 7 6 11 11 C 1.37880 * 119.99838 * 59.99783 * 9 7 6 12 12 N 1.31510 * 120.00046 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99883 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47207 * 90.00346 * 13 11 9 15 15 H 1.48508 * 109.47130 * 210.00145 * 13 11 9 16 16 H 1.48500 * 109.47432 * 330.00237 * 13 11 9 17 17 O 1.42899 * 109.46855 * 294.99874 * 7 6 4 18 18 C 1.35718 * 116.99396 * 150.00606 * 17 7 6 19 19 N 1.32323 * 120.12921 * 359.97438 * 18 17 7 20 20 N 1.28343 * 122.12038 * 180.02562 * 19 18 17 21 21 C 1.31923 * 122.24238 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 120.02803 * 180.02562 * 21 20 19 23 23 C 1.38864 * 119.94296 * 359.97438 * 21 20 19 24 24 C 1.38642 * 118.00888 * 359.73098 * 23 21 20 25 25 C 1.50694 * 121.03134 * 180.26470 * 24 23 21 26 26 H 1.09000 * 109.47303 * 59.99035 * 1 2 3 27 27 H 1.08998 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46566 * 300.00007 * 1 2 3 29 29 H 1.09001 * 109.47165 * 240.00455 * 2 1 3 30 30 H 1.08995 * 109.47409 * 120.00480 * 2 1 3 31 31 H 1.08993 * 109.47512 * 60.00512 * 6 4 3 32 32 H 1.09000 * 109.47247 * 300.00221 * 6 4 3 33 33 H 0.97000 * 120.00125 * 180.02562 * 12 11 9 34 34 H 1.08006 * 120.99271 * 179.97438 * 23 21 20 35 35 H 1.09000 * 109.47481 * 270.26560 * 25 24 23 36 36 H 1.09000 * 109.47587 * 30.26972 * 25 24 23 37 37 H 1.09004 * 109.47364 * 150.26906 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4488 2.8571 0.0010 8 1 5.7807 2.2499 -0.8411 9 6 6.0245 4.2443 -0.1222 10 1 6.6592 4.4932 -0.9598 11 6 5.7409 5.1959 0.8344 12 7 4.9683 4.8929 1.8546 13 14 6.4551 6.9152 0.6820 14 1 5.5210 7.7726 -0.0910 15 1 6.6505 7.4920 2.0365 16 1 7.7617 6.8481 -0.0205 17 8 5.8946 2.2630 1.2218 18 6 7.0519 1.5556 1.1760 19 7 7.7144 1.4391 0.0365 20 7 8.8117 0.7790 -0.0505 21 6 9.3524 0.1724 0.9888 22 17 10.8394 -0.7044 0.8060 23 6 8.7315 0.2368 2.2292 24 6 7.5492 0.9540 2.3291 25 6 6.8217 1.0733 3.6434 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5847 3.4692 0.8911 32 1 3.5852 3.4698 -0.8888 33 1 4.7685 5.5624 2.5274 34 1 9.1591 -0.2538 3.0912 35 1 6.1154 0.2492 3.7439 36 1 7.5410 1.0372 4.4615 37 1 6.2823 2.0200 3.6755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229165277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:11 Heat of formation + Delta-G solvation = -99.913769 kcal Electronic energy + Delta-G solvation = -24351.766044 eV Core-core repulsion = 20541.444840 eV Total energy + Delta-G solvation = -3810.321204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17075 -41.41473 -39.28803 -37.78481 -37.49410 -35.70055 -34.98772 -32.98713 -32.46738 -31.63181 -29.15562 -28.20512 -25.68974 -24.47281 -23.93508 -23.21925 -21.64043 -19.88660 -18.87796 -18.73978 -17.88919 -17.60236 -17.40298 -17.23783 -16.74498 -16.44328 -15.45143 -15.12824 -15.08281 -14.82239 -14.22776 -14.13957 -14.00505 -13.85904 -13.65946 -13.37661 -13.32683 -12.97900 -12.86643 -12.82480 -12.63326 -12.56914 -12.47626 -12.34788 -12.20913 -11.60261 -11.50758 -11.46627 -11.22477 -10.86311 -10.73015 -10.46116 -9.59149 -8.22763 -6.46757 -0.26725 0.00601 0.63367 1.28316 1.39334 1.43046 1.51954 1.80411 2.32713 2.37027 2.49609 3.07444 3.27241 3.47905 3.77911 3.85510 3.93923 3.99756 4.12235 4.19797 4.33915 4.45902 4.55936 4.68620 4.72286 4.78210 4.86530 4.92458 4.95109 5.06709 5.13595 5.32688 5.36171 5.50641 5.67733 5.96015 6.41504 6.74931 6.85746 7.31649 7.65162 8.78731 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.005660 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.638448 B = 4945.527430 C = 7111.140666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.097 4.097 7 C 0.226 3.774 8 H 0.030 0.970 9 C -0.567 4.567 10 H 0.053 0.947 11 C 0.051 3.949 12 N -0.876 5.876 13 Si 0.951 3.049 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.283 1.283 17 O -0.276 6.276 18 C 0.280 3.720 19 N -0.313 5.313 20 N -0.236 5.236 21 C 0.060 3.940 22 Cl -0.001 7.001 23 C -0.071 4.071 24 C -0.109 4.109 25 C -0.094 4.094 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.272 0.728 34 H 0.204 0.796 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -9.075 4.569 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.134 4.134 7 C 0.172 3.828 8 H 0.048 0.952 9 C -0.604 4.604 10 H 0.072 0.928 11 C -0.154 4.154 12 N -0.512 5.512 13 Si 0.776 3.224 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.208 1.208 17 O -0.178 6.178 18 C 0.093 3.907 19 N -0.171 5.171 20 N -0.081 5.081 21 C -0.115 4.115 22 Cl 0.027 6.973 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.151 4.151 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.221 0.779 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.966 -8.913 3.336 9.718 hybrid contribution 0.604 0.452 0.818 1.113 sum -1.362 -8.461 4.154 9.524 Atomic orbital electron populations 1.21807 0.89848 1.04439 1.03755 1.23277 0.97491 0.79668 1.02027 1.86547 1.24097 1.33534 1.83963 1.24532 0.80409 0.93411 0.70639 1.90584 1.61125 1.44248 1.47227 1.21696 0.95207 0.89147 1.07391 1.19722 0.89525 0.91952 0.81596 0.95153 1.21450 1.32897 0.95538 1.10468 0.92849 1.25605 0.93986 1.01773 0.94052 1.69913 1.34699 1.35458 1.11084 0.85674 0.78865 0.80073 0.77758 1.18758 1.20253 1.20802 1.86426 1.31761 1.60217 1.39361 1.21919 0.88719 0.88523 0.91491 1.73147 1.03511 1.16892 1.23564 1.72476 1.03786 1.04105 1.27750 1.23448 0.93900 1.01022 0.93179 1.98363 1.28520 1.72404 1.98051 1.22261 0.92765 0.96721 0.98128 1.20860 0.96645 0.97882 0.96749 1.20655 1.00449 1.03325 0.90693 0.91139 0.87840 0.91311 0.91784 0.91998 0.85361 0.86411 0.91851 0.77887 0.89453 0.87306 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.29 71.98 0.74 -1.93 16 2 C 0.05 1.36 6.19 71.98 0.45 1.81 16 3 O -0.36 -13.06 10.22 -51.43 -0.53 -13.58 16 4 C 0.46 19.77 7.84 71.24 0.56 20.33 16 5 O -0.54 -25.59 15.17 27.03 0.41 -25.18 16 6 C -0.10 -4.37 5.22 29.85 0.16 -4.22 16 7 C 0.23 11.58 1.60 29.85 0.05 11.63 16 8 H 0.03 1.66 6.82 -2.39 -0.02 1.64 16 9 C -0.57 -30.44 8.90 25.60 0.23 -30.22 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 11 C 0.05 2.62 5.24 84.66 0.44 3.07 16 12 N -0.88 -44.74 10.93 21.45 0.23 -44.51 16 13 Si 0.95 41.14 29.54 68.60 2.03 43.16 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 O -0.28 -13.97 7.57 -76.58 -0.58 -14.55 16 18 C 0.28 13.17 7.51 84.86 0.64 13.80 16 19 N -0.31 -15.44 9.83 -170.22 -1.67 -17.12 16 20 N -0.24 -10.37 11.48 -49.87 -0.57 -10.94 16 21 C 0.06 2.08 7.36 84.83 0.62 2.71 16 22 Cl 0.00 -0.03 29.13 -2.72 -0.08 -0.11 16 23 C -0.07 -2.13 9.71 22.52 0.22 -1.91 16 24 C -0.11 -3.97 5.94 -19.53 -0.12 -4.09 16 25 C -0.09 -2.76 9.86 71.23 0.70 -2.06 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 30 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.13 6.13 6.22 -2.39 -0.01 6.12 16 32 H 0.12 4.87 8.14 -2.39 -0.02 4.86 16 33 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 34 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.11 2.25 8.11 -2.39 -0.02 2.23 16 37 H 0.06 2.19 7.63 -2.39 -0.02 2.18 16 Total: -1.00 -66.20 340.80 5.03 -61.18 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.10 Total: 12.74 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.69 Total: 8.92 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.01 Total: -72.57 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.70 Total: -53.32 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -66.20 5.03 -61.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229165277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.739 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds