Wall clock time and date at job start Tue Mar 31 2020 10:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86796 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47442 * 273.22324 * 3 2 1 5 5 H 1.48496 * 109.47240 * 33.22454 * 3 2 1 6 6 H 1.48504 * 109.47306 * 153.22383 * 3 2 1 7 7 C 1.39933 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99825 * 345.72466 * 7 2 1 9 9 C 1.41150 * 120.00210 * 165.73290 * 7 2 1 10 10 C 1.40722 * 120.28818 * 330.12776 * 9 7 2 11 11 C 1.36487 * 119.93376 * 180.02562 * 10 9 7 12 12 C 1.38829 * 120.53325 * 0.02562 * 11 10 9 13 13 C 1.38303 * 120.59052 * 359.69732 * 12 11 10 14 14 C 1.38446 * 120.05308 * 0.56054 * 13 12 11 15 15 O 1.35637 * 120.26599 * 179.74504 * 14 13 12 16 16 C 1.42903 * 117.00346 * 2.84669 * 15 14 13 17 17 H 1.09007 * 110.26614 * 322.21177 * 16 15 14 18 18 C 1.54339 * 110.38584 * 200.08219 * 16 15 14 19 19 C 1.54348 * 102.38997 * 214.67903 * 18 16 15 20 20 C 1.51368 * 105.17012 * 26.35091 * 19 18 16 21 21 C 1.38486 * 130.37846 * 162.80734 * 20 19 18 22 22 C 1.38218 * 120.20343 * 179.97438 * 21 20 19 23 23 Cl 1.73605 * 120.04202 * 180.02562 * 22 21 20 24 24 C 1.38368 * 119.91118 * 0.06504 * 22 21 20 25 25 C 1.38080 * 119.91543 * 359.97438 * 24 22 21 26 26 C 1.38222 * 109.76023 * 342.81108 * 20 19 18 27 27 H 0.97000 * 120.00513 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.03679 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.74033 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.70168 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.97219 * 180.28035 * 13 12 11 32 32 H 1.08993 * 110.82375 * 332.90478 * 18 16 15 33 33 H 1.09004 * 110.82486 * 96.45565 * 18 16 15 34 34 H 1.08996 * 110.30070 * 145.27638 * 19 18 16 35 35 H 1.09000 * 110.30210 * 267.32843 * 19 18 16 36 36 H 1.08001 * 119.89605 * 0.02562 * 21 20 19 37 37 H 1.07991 * 120.04290 * 180.25992 * 24 22 21 38 38 H 1.08004 * 119.88086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4219 2.0858 -1.3978 5 1 1.4758 2.6320 0.7671 6 1 3.5726 1.4215 0.6307 7 6 2.0084 -1.2118 -0.0005 8 1 1.4933 -2.1329 0.2297 9 6 3.3872 -1.2305 -0.3018 10 6 3.9373 -0.2686 -1.1692 11 6 5.2714 -0.2938 -1.4560 12 6 6.0945 -1.2630 -0.8986 13 6 5.5780 -2.2153 -0.0389 14 6 4.2273 -2.2158 0.2645 15 8 3.7153 -3.1509 1.1031 16 6 4.6379 -4.0712 1.6896 17 1 5.4088 -4.3440 0.9688 18 6 3.8980 -5.3318 2.1852 19 6 4.6965 -5.7081 3.4514 20 6 5.2998 -4.4086 3.9399 21 6 5.8356 -4.0759 5.1728 22 6 6.3370 -2.8069 5.3934 23 17 7.0084 -2.3945 6.9403 24 6 6.3024 -1.8655 4.3799 25 6 5.7675 -2.1963 3.1507 26 6 5.2661 -3.4680 2.9277 27 1 -0.4851 0.8400 0.0004 28 1 3.3044 0.4888 -1.6077 29 1 5.6902 0.4457 -2.1224 30 1 7.1483 -1.2706 -1.1351 31 1 6.2282 -2.9620 0.3925 32 1 2.8626 -5.1005 2.4346 33 1 3.9503 -6.1286 1.4432 34 1 4.0315 -6.1244 4.2080 35 1 5.4820 -6.4224 3.2048 36 1 5.8625 -4.8105 5.9640 37 1 6.6974 -0.8746 4.5487 38 1 5.7411 -1.4612 2.3599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:40 Heat of formation + Delta-G solvation = -11.449901 kcal Electronic energy + Delta-G solvation = -23273.903939 eV Core-core repulsion = 19878.268079 eV Total energy + Delta-G solvation = -3395.635860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70009 -40.12492 -38.30678 -37.47243 -35.84913 -35.48473 -32.58681 -31.97853 -30.74890 -29.88544 -27.87766 -26.82010 -23.90583 -23.76330 -22.57396 -21.89429 -21.47820 -19.42565 -18.84990 -17.92701 -17.30392 -16.74334 -16.70903 -16.13520 -15.87149 -15.63461 -15.40273 -15.13684 -14.63129 -14.37701 -14.25493 -14.17263 -13.75050 -13.60930 -13.12179 -13.03873 -12.75505 -12.71835 -12.60121 -12.55238 -12.38454 -12.18763 -11.86554 -11.77600 -11.64197 -11.45851 -11.35865 -10.96679 -9.90125 -9.56853 -9.50880 -8.93475 -8.84411 -6.37364 0.03789 0.24141 0.73616 0.84778 1.04976 1.23817 1.39249 1.46714 2.11466 2.41504 2.63154 2.76684 3.33943 3.41110 3.56085 3.85006 3.95721 4.02272 4.13162 4.22951 4.26525 4.37946 4.41309 4.53468 4.63587 4.65031 4.79089 4.85768 4.95247 5.02770 5.10204 5.10650 5.15818 5.22686 5.27593 5.30209 5.51797 5.72267 5.73766 5.76318 5.97652 6.19322 6.34308 6.48745 6.81369 7.08775 8.24823 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.004411 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.836570 B = 6346.578008 C = 6727.392543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.464 4.464 8 H 0.050 0.950 9 C 0.048 3.952 10 C -0.227 4.227 11 C -0.114 4.114 12 C -0.189 4.189 13 C -0.169 4.169 14 C 0.027 3.973 15 O -0.316 6.316 16 C 0.110 3.890 17 H 0.092 0.908 18 C -0.111 4.111 19 C -0.067 4.067 20 C -0.079 4.079 21 C -0.101 4.101 22 C -0.034 4.034 23 Cl -0.062 7.062 24 C -0.121 4.121 25 C -0.094 4.094 26 C -0.131 4.131 27 H 0.291 0.709 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.870 -8.088 8.817 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.171 4.171 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.494 4.494 8 H 0.069 0.931 9 C 0.045 3.955 10 C -0.247 4.247 11 C -0.132 4.132 12 C -0.209 4.209 13 C -0.188 4.188 14 C -0.018 4.018 15 O -0.231 6.231 16 C 0.054 3.946 17 H 0.110 0.890 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.061 4.061 23 Cl -0.033 7.033 24 C -0.139 4.139 25 C -0.112 4.112 26 C -0.132 4.132 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.176 0.824 37 H 0.161 0.839 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.445 -8.005 9.029 18.065 hybrid contribution -0.176 1.068 -0.066 1.085 sum 13.269 -6.937 8.963 17.450 Atomic orbital electron populations 1.69718 1.09034 1.31060 1.38879 1.26788 0.95431 1.03948 0.90898 0.85516 0.79373 0.76631 0.79548 1.17996 1.20984 1.17671 1.19187 0.92938 0.94855 1.42452 0.93147 1.17364 0.92728 0.92368 0.93052 1.20721 0.96723 1.03195 1.04024 1.20668 0.92894 0.99307 1.00310 1.20713 0.99721 0.97837 1.02582 1.21029 0.93078 1.01841 1.02837 1.19243 0.92156 0.94365 0.96006 1.86124 1.36201 1.42117 1.58668 1.22204 0.91949 0.89226 0.91263 0.89041 1.22464 0.99739 0.94280 0.98344 1.21100 0.99726 0.93147 0.96355 1.20730 0.97664 0.97274 0.92288 1.20662 0.98823 0.95222 0.97269 1.20829 1.02026 0.95529 0.87699 1.98357 1.83851 1.93769 1.27354 1.21066 1.00951 1.00096 0.91814 1.20799 0.97214 0.96012 0.97210 1.21282 0.99276 0.94818 0.97773 0.89890 0.88120 0.85412 0.84792 0.85386 0.91076 0.87285 0.87851 0.86666 0.82432 0.83899 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.28 13.93 21.83 0.30 -48.98 16 2 C 0.04 2.34 5.45 85.25 0.46 2.80 16 3 Si 0.97 44.45 24.41 68.60 1.67 46.13 16 4 H -0.25 -10.89 6.66 99.48 0.66 -10.23 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.25 -11.81 6.72 99.48 0.67 -11.14 16 7 C -0.46 -27.27 9.22 23.40 0.22 -27.06 16 8 H 0.05 3.27 7.90 -2.91 -0.02 3.24 16 9 C 0.05 2.49 5.16 -21.20 -0.11 2.38 16 10 C -0.23 -10.80 6.99 22.47 0.16 -10.64 16 11 C -0.11 -4.54 9.97 22.00 0.22 -4.32 16 12 C -0.19 -6.96 10.04 22.43 0.23 -6.74 16 13 C -0.17 -6.56 7.30 22.33 0.16 -6.40 16 14 C 0.03 1.25 6.01 23.08 0.14 1.39 16 15 O -0.32 -14.15 9.21 -89.51 -0.82 -14.97 16 16 C 0.11 3.55 2.78 30.52 0.08 3.63 16 17 H 0.09 2.70 6.14 -2.38 -0.01 2.68 16 18 C -0.11 -2.73 6.80 31.51 0.21 -2.51 16 19 C -0.07 -1.22 6.77 30.52 0.21 -1.01 16 20 C -0.08 -1.95 6.14 -19.60 -0.12 -2.07 16 21 C -0.10 -2.28 9.82 22.32 0.22 -2.06 16 22 C -0.03 -0.85 6.32 22.30 0.14 -0.71 16 23 Cl -0.06 -1.33 28.96 -2.72 -0.08 -1.41 16 24 C -0.12 -3.38 9.83 22.26 0.22 -3.16 16 25 C -0.09 -3.09 9.39 22.30 0.21 -2.88 16 26 C -0.13 -4.08 5.59 -19.59 -0.11 -4.19 16 27 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 28 H 0.10 4.79 4.38 -2.91 -0.01 4.77 16 29 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 30 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.13 4.24 5.82 -2.91 -0.02 4.22 16 32 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 33 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.14 3.55 8.06 -2.92 -0.02 3.53 16 38 H 0.11 4.22 6.24 -2.91 -0.02 4.21 16 Total: -1.00 -65.76 324.11 4.63 -61.13 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.01 Total: 21.64 kcal Atomic # 6 Polarization: -66.08 SS G_CDS: 2.54 Total: -63.54 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.30 Total: -48.98 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.82 Total: -14.97 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.13 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -65.76 4.63 -61.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.682 kcal (2) G-P(sol) polarization free energy of solvation -65.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds