Wall clock time and date at job start Tue Mar 31 2020 10:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 C 1.52999 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47121 * 184.10847 * 4 3 2 6 6 C 1.46898 * 111.00090 * 160.78336 * 5 4 3 7 7 C 1.50695 * 109.47000 * 288.26462 * 6 5 4 8 8 H 1.08001 * 120.00606 * 356.21429 * 7 6 5 9 9 C 1.37883 * 120.00037 * 176.21719 * 7 6 5 10 10 N 1.31514 * 120.00161 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99691 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46838 * 90.00190 * 11 9 7 13 13 H 1.48499 * 109.47015 * 210.00063 * 11 9 7 14 14 H 1.48495 * 109.47195 * 330.00467 * 11 9 7 15 15 C 1.46907 * 110.99829 * 284.73847 * 5 4 3 16 16 C 1.50698 * 109.47029 * 170.00085 * 15 5 4 17 17 C 1.34831 * 126.28194 * 270.03784 * 16 15 5 18 18 N 1.36448 * 108.22613 * 179.97438 * 17 16 15 19 19 H 0.96995 * 125.64393 * 180.02562 * 18 17 16 20 20 C 1.36359 * 108.71489 * 359.73834 * 18 17 16 21 21 Br 1.89095 * 125.89635 * 180.26468 * 20 18 17 22 22 C 1.34940 * 108.20633 * 0.43320 * 20 18 17 23 23 H 1.08999 * 109.47529 * 59.99609 * 1 2 3 24 24 H 1.09002 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47408 * 299.99876 * 1 2 3 26 26 H 1.09004 * 109.47092 * 239.99691 * 2 1 3 27 27 H 1.08999 * 109.47529 * 120.00391 * 2 1 3 28 28 H 1.08995 * 109.46807 * 60.00168 * 3 2 1 29 29 H 1.09004 * 109.46940 * 299.99917 * 3 2 1 30 30 H 1.08997 * 109.47386 * 64.10022 * 4 3 2 31 31 H 1.09005 * 109.47158 * 304.10422 * 4 3 2 32 32 H 1.09001 * 109.47321 * 48.26439 * 6 5 4 33 33 H 1.09002 * 109.46856 * 168.26753 * 6 5 4 34 34 H 0.97005 * 119.99881 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46929 * 49.99898 * 15 5 4 36 36 H 1.08999 * 109.46758 * 289.99796 * 15 5 4 37 37 H 1.08007 * 125.88767 * 359.97438 * 17 16 15 38 38 H 1.07994 * 126.29122 * 179.84230 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8239 0.0986 6 6 5.4563 2.8559 0.5529 7 6 5.5192 2.4783 2.0104 8 1 4.6080 2.2980 2.5614 9 6 6.7402 2.3629 2.6406 10 7 6.7951 2.0329 3.9125 11 14 8.3163 2.6740 1.6874 12 1 8.6799 4.1104 1.7875 13 1 9.4101 1.8458 2.2556 14 1 8.1118 2.3134 0.2615 15 6 3.9057 3.5301 -1.1803 16 6 4.1841 4.9976 -0.9804 17 6 3.2808 5.9438 -0.6538 18 7 3.9294 7.1412 -0.5671 19 1 3.5188 7.9917 -0.3463 20 6 5.2515 6.9431 -0.8359 21 35 6.5933 8.2754 -0.8424 22 6 5.4363 5.6327 -1.1000 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.9937 -0.9253 31 1 3.9337 0.8661 0.8501 32 1 6.0448 2.1486 -0.0315 33 1 5.8586 3.8603 0.4201 34 1 7.6541 1.9513 4.3557 35 1 2.8874 3.4001 -1.5469 36 1 4.6084 3.1227 -1.9072 37 1 2.2257 5.7820 -0.4892 38 1 6.3727 5.1573 -1.3521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233436344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:54 Heat of formation + Delta-G solvation = 20.043719 kcal Electronic energy + Delta-G solvation = -18564.368371 eV Core-core repulsion = 15680.654322 eV Total energy + Delta-G solvation = -2883.714049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 314.069 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.07412 -38.70743 -35.60946 -34.58380 -32.77422 -32.40510 -30.54226 -29.72217 -28.26873 -25.87311 -24.23232 -22.17297 -21.72501 -21.41429 -20.21750 -19.08561 -18.69146 -16.60620 -16.41350 -16.08325 -15.55174 -15.13271 -14.91487 -14.81633 -14.52894 -14.33660 -14.03188 -13.79337 -13.49636 -13.18469 -13.03816 -12.80563 -12.37743 -12.30251 -11.97706 -11.90272 -11.87890 -11.77758 -11.51838 -11.43584 -11.31822 -11.16858 -10.73316 -9.73004 -9.02492 -8.83774 -8.24950 -6.24677 0.36262 1.10263 1.33203 1.34198 1.43993 1.84918 2.35605 2.53119 3.09438 3.46255 4.12432 4.17271 4.25072 4.34743 4.39909 4.43847 4.55709 4.69684 4.77735 4.82988 4.89709 4.95160 5.00478 5.06960 5.12146 5.19639 5.24171 5.30333 5.39445 5.55279 5.60002 5.64631 5.81481 5.96533 6.10446 6.54547 6.60609 6.76285 6.82027 7.38163 8.91997 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.005113 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.005935 B = 5475.118479 C = 7514.438180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.098 4.098 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.172 3.828 7 C -0.502 4.502 8 H 0.036 0.964 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.933 3.067 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.252 1.252 15 C 0.127 3.873 16 C -0.173 4.173 17 C 0.045 3.955 18 N -0.534 5.534 19 H 0.432 0.568 20 C -0.011 4.011 21 Br 0.000 7.000 22 C -0.160 4.160 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.046 0.954 32 H -0.023 1.023 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.025 0.975 37 H 0.203 0.797 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 10.603 -14.661 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.136 4.136 4 C -0.067 4.067 5 N -0.257 5.257 6 C 0.045 3.955 7 C -0.540 4.540 8 H 0.055 0.945 9 C -0.187 4.187 10 N -0.591 5.591 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.176 1.176 15 C -0.001 4.001 16 C -0.180 4.180 17 C -0.090 4.090 18 N -0.133 5.133 19 H 0.272 0.728 20 C -0.201 4.201 21 Br 0.084 6.916 22 C -0.189 4.189 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.064 0.936 32 H -0.005 1.005 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.988 11.467 -14.150 19.888 hybrid contribution 1.294 -0.403 -0.086 1.358 sum -6.694 11.064 -14.236 19.233 Atomic orbital electron populations 1.21712 0.94413 1.01991 1.02053 1.21491 0.96934 0.96191 1.01564 1.21480 0.93059 0.97001 1.02087 1.22039 0.96443 0.89095 0.99075 1.61907 1.20995 1.15032 1.27800 1.19940 0.86456 0.95642 0.93462 1.21285 0.92797 1.44827 0.95125 0.94526 1.25736 1.02414 0.94988 0.95609 1.70049 1.26294 1.50952 1.11841 0.85909 0.79357 0.78940 0.80039 1.19193 1.20723 1.17620 1.20446 1.01339 0.88757 0.89575 1.19456 0.93023 0.95495 1.10074 1.22180 0.99519 0.82940 1.04330 1.41861 1.05336 1.10864 1.55193 0.72823 1.21768 0.86006 0.94591 1.17764 1.96674 1.46880 1.49761 1.98333 1.20841 0.98879 0.91813 1.07319 0.91740 0.92073 0.93141 0.91576 0.93554 0.92880 0.90655 0.95362 0.93551 1.00539 0.94784 0.92695 0.88217 0.95699 0.78010 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.16 16 2 C -0.12 -3.10 5.93 30.59 0.18 -2.92 16 3 C -0.10 -2.85 5.26 30.60 0.16 -2.69 16 4 C 0.06 2.30 4.82 86.30 0.42 2.72 16 5 N -0.53 -21.84 4.38 -905.37 -3.96 -25.80 16 6 C 0.17 8.53 3.68 85.56 0.31 8.84 16 7 C -0.50 -29.87 8.85 25.60 0.23 -29.65 16 8 H 0.04 2.43 8.02 -2.91 -0.02 2.40 16 9 C 0.01 0.55 5.47 84.66 0.46 1.01 16 10 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 11 Si 0.93 46.04 27.55 68.60 1.89 47.93 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.25 -11.75 6.43 99.48 0.64 -11.11 16 15 C 0.13 4.10 5.29 85.55 0.45 4.55 16 16 C -0.17 -5.51 5.02 -19.99 -0.10 -5.61 16 17 C 0.04 1.13 11.85 83.19 0.99 2.12 16 18 N -0.53 -12.54 6.08 -189.54 -1.15 -13.69 16 19 H 0.43 7.07 8.96 -92.71 -0.83 6.23 16 20 C -0.01 -0.33 7.65 83.23 0.64 0.31 16 21 Br 0.00 0.01 34.09 -20.37 -0.69 -0.68 16 22 C -0.16 -5.37 9.13 22.17 0.20 -5.17 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.83 6.90 -2.39 -0.02 1.81 16 30 H 0.03 0.98 8.01 -2.39 -0.02 0.96 16 31 H 0.05 2.09 7.09 -2.38 -0.02 2.07 16 32 H -0.02 -1.17 6.85 -2.39 -0.02 -1.18 16 33 H 0.03 1.70 5.18 -2.39 -0.01 1.69 16 34 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 35 H 0.10 2.60 6.67 -2.39 -0.02 2.58 16 36 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 37 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.13 4.42 8.00 -2.91 -0.02 4.40 16 Total: -1.00 -70.60 328.58 1.18 -69.42 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.15 Total: 12.16 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 4.65 Total: -28.65 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -4.82 Total: -100.18 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.89 Total: 47.93 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -70.60 1.18 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233436344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.465 kcal (2) G-P(sol) polarization free energy of solvation -70.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds